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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1739 fasta sequence
[AAATTTTGTCCCACCGGAGCCTACTAACAGCGCAATAGCTGATAACCTGAAAATAGATCCATTCAATCCTTGTGTGGAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTGCATGCAAAGCATTCGATGCAGAGAAGGTAACCTTAGAGAAGTTTCGTGCCATGAAGCAGTCGCTGATAAGAAACAACAAGCTTGTTGTTAGGATTGCTGGTCGATACTTTCCGTGGGATGCAGCTGCACCTGTCATACTGGGCATGGTTTCTTTTCAGGAGGAACAATCCTTTGAACCCCAAGGTATGATAAAGGTAGAGCGAGTTGAGCCAAATGCAGCACCAGGTGGCTGGAGAATATGGCCATTTTCTTTCAAAAGGACAAGGTCTGTTAACACTGTCCAGCCAGTTTCTGAAAGCACTGAGGAGGCTTCCTCTTCCGCTCCTGTTAAAGAAGTGGAGAGAGAAAACAACAAACCCAGGGCAAAGAGGATGGAGAGAAAAGTGCGTTCGCTCACTCCAACATCTGAGGAGCTAGCATCTCTTGATCTCAGAGAGGGCAGGAACGTGGTAACATTTACCTTCTCAACTGGAATGCTTGGAAAACAGCAGGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAGTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTNGTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGGAAAATGGATATCAGTTGCTTTTCTTGAGTGCGCGTGCTATTTCACAAGCTCACCTGACAAGGCAGTTTCTTTTCAACCTTAAGCAGGATGGAAAAGCTCTTCCTGATGGCCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAGTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATAGCCGCAGTGCACGCTATGCTGTACAAGGTCTCTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAATATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTCACGTCACTTCTCATAAGATTTCAGTTCTCTTTTTTTTTAACTATGTAGTTGTGTTTACATTGTATAATTTGTACAAGTTAGCAGTT-----TAATAATGCATTTGCAAATGTGCC]
[+] EMBL CB663393 [AAATTTTGTCCCACCGGAGCCTACTAACAGCGCAATAGCTGATAACCTGAAAATAGATCCATTCAATCCTTGTGTGGAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGAAGATGCTGCATGCAAAGCATTCGATGCAGAGAAGGTAACCTTAGAGAAGTTTCGTGCCATGAAGCAGTCGCTGATAAGAAACAACAAGCTTGTTGTTAGGATTGCTGGTCGATACTTTCCGTGGGATGCAGCTGCACCTGTCATACTGGGCATGGTTTCTTTTCAGGAGGAACAATCCTTTGAACCCCAAGGTATGATAAAGGTAGAGCGAGTTGAGCCAAATGCAGCACCAGGTGGCTGGAGAATATGGCCATTTTCTTTCAAAAGGACAAGGTCTGTTAACACTGTCCAGCCAGTTTCTGAAAGCACTGAGGAGGCTTCCTCTTCCGCTCCTGTTAAAGAAGTGGAGAGAGAAAACAACAAACCCAGGGCAAAGAGGATGGAGAGAAAAGTGCGTTCGCTCACTCCAACATCTGAGGAGCTAGCATCTCTTGATCTCAGAGAGGGCAGGAACGTGGTAACATTTACCTTCTCAACTGGAATGCTTGGAAAACAGCAGGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAGTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTNGTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGGAAAATGGATATCAGTTGCTT ]
[+] EMBL AK062893 [ ATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAGTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTGTTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGGAAAATGGATATCAGTTGCTTTTCTTGAGTGCGCGTGCTATTTCACAAGCTCACCTGACAAGGCAGTTTCTTTTCAACCTTAAGCAGGATGGAAAAGCTCTTCCTGATGGCCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAGTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATAGCCGCAGTGCACGCTATGCTGTACAAGGTCTCTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAATATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTCACGTCACTTCTCATAAGATTTCAGTTCTCTTTTTTTTTAACTATGTAGTTGTGTTTACATTGTATAATTTGTACAAGTTAGCAGTT TAATA ]
[-] EMBL CB663394 [ TATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATAGCCGCAGTGCACGCTATGCTGTACAAGGTCTCTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAATATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTCACGTCACTTCTCATAAGATTTCAGTTCTCTTTTTTTTTAACTATGTAGTTGTGTTTACATTGTATAATTTGTACAAGTTAGCAGTT TAATAATGCATTTGCAAATGTGCC]
[-] EMBL CB627435 [ AAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATGGCCGCAGTGCATGCTATGCTGTACAAGGTCTCTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAATATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTCACGTCACTTCGCATAAGATTTCAGTTCTC TTTTTTTTAACTATGTAGTTGTGTTTACATTGTATAATTTGTACAAGTTAGCAGTTTAATATAATAATGCATTTGCA ]
consensusID : consensus_8269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[TATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTGTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGGCTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATGGCCGCAGTGCATGCTATGCTGTACAAGGTGTTTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTGGCGAGGTTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCATGCAACTGAATATGTGTAATATACTGACTGGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTGAGGTCACTTCGCATAAGATTTCAGTTCTCTTTTTTTTAACTATGTAGTTGTGTTTNCATTGTTACCTCAAGGTGGGAAAT]
[-] EMBL CB627434 [TATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGATACAAAATCATACACATCCCTCCATGCTGTTGTCAATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGGCTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGTTGATATTTGAGGTATGGCCGCAGTGCATGCTATGCTGTACAAGGTGTTTGGCACGCAGCAGCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTGGCGAGGTTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCATGCAACTGAATATGTGTAATATACTGACTGGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAACTGAGGTCACTTCGCATAAGATTTCAGTTCTCTTTTTTTTAACTATGTAGTTGTGTTTNCATTGTTACCTCAAGGTGGGAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8269#0 AAATTTTGTCCCACCGGAGCCTACTAACAGCGCAATAGCTGATAACCTGAAAATAGATCC 60
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 ATTCAATCCTTGTGTGGAATTATCCCTATGCAGGCACCTGTTATCAGAAGGCATGGGAGA 120
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 AGATGCTGCATGCAAAGCATTCGATGCAGAGAAGGTAACCTTAGAGAAGTTTCGTGCCAT 180
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 GAAGCAGTCGCTGATAAGAAACAACAAGCTTGTTGTTAGGATTGCTGGTCGATACTTTCC 240
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 GTGGGATGCAGCTGCACCTGTCATACTGGGCATGGTTTCTTTTCAGGAGGAACAATCCTT 300
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 TGAACCCCAAGGTATGATAAAGGTAGAGCGAGTTGAGCCAAATGCAGCACCAGGTGGCTG 360
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 GAGAATATGGCCATTTTCTTTCAAAAGGACAAGGTCTGTTAACACTGTCCAGCCAGTTTC 420
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 TGAAAGCACTGAGGAGGCTTCCTCTTCCGCTCCTGTTAAAGAAGTGGAGAGAGAAAACAA 480
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 CAAACCCAGGGCAAAGAGGATGGAGAGAAAAGTGCGTTCGCTCACTCCAACATCTGAGGA 540
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 GCTAGCATCTCTTGATCTCAGAGAGGGCAGGAACGTGGTAACATTTACCTTCTCAACTGG 600
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 AATGCTTGGAAAACAGCAGGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCAT 660
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 TGTCATTTCAGATGTTGATGGAACTATCACCAAGTCTGATGTTCTTGGCCAGTTCATGCC 720
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 GCTGGTTGGTNGTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGGA 780
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 AAATGGATATCAGTTGCTTTTCTTGAGTGCGCGTGCTATTTCACAAGCTCACCTGACAAG 840
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 GCAGTTTCTTTTCAACCTTAAGCAGGATGGAAAAGCTCTTCCTGATGGCCCTGTTGTGAT 900
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 ATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAGTTATCAGACGAGCTCCTCACGA 960
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 ATTCAAGATCTCATGCCTAGGGGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATT 1020
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 CTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCC 1080
consensus_8269#1 ------------------------------------------------------------
consensus_8269#0 TATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGA 1140
consensus_8269#1 TATGGGCAAAATTTTTATTATAAATCCCAAGGGTGAAGTTGCGGTGAATCGTCGAGTAGA 60
************************************************************
consensus_8269#0 TACAAAATCATACACATCCCTCCATGCTCTTGTCAATGGGATGTTCCCTCCGATATCAAC 1200
consensus_8269#1 TACAAAATCATACACATCCCTCCATGCTGTTGTCAATGGGATGTTCCCTCCGATATCAAC 120
**************************** *******************************
consensus_8269#0 GTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGT 1260
consensus_8269#1 GTCATCTGAGCAGGAGGGCTACAATACTTGGAATTACTGGAAAATGCCGTTACCTGCTGT 180
***************** ******************************************
consensus_8269#0 TGATATTTGAGGTATAGCCGCAGTGCACGCTATGCTGTACAAGGTCTCTGGCACGCAGCA 1320
consensus_8269#1 TGATATTTGAGGTATGGCCGCAGTGCATGCTATGCTGTACAAGGTGTTTGGCACGCAGCA 240
*************** *********** ***************** * ************
consensus_8269#0 GCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTG 1380
consensus_8269#1 GCGGCCATGAGAAATGGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTG 300
************************************************************
consensus_8269#0 GTGTCATGTGGATGCTCCTGACATAAATTCTTGCGAGGCTGACACTGTACATAGGATCAT 1440
consensus_8269#1 GTGTCATGTGGATGCTCCTGACATAAATTCTGGCGAGGTTGACACTGTACATAGGATCAT 360
******************************* ****** *********************
consensus_8269#0 AATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTC 1500
consensus_8269#1 AATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATTAGTTC 420
************************************************************
consensus_8269#0 CTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAA 1560
consensus_8269#1 CTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCATGCAACTGAA 480
************************************************* **********
consensus_8269#0 TATGTGTAATATACTGACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCC 1620
consensus_8269#1 TATGTGTAATATACTGACTGGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCC 540
******************* ****************************************
consensus_8269#0 CTGCAACTCACGTCACTTCTCATAAGATTTCAGTTCTCTTTTTTTTTAACTATGTAGTTG 1680
consensus_8269#1 CTGCAACTGAGGTCACTTCGCATAAGATTTCAGTTCTCTTTTTTTT-AACTATGTAGTTG 599
******** * ******** ************************** *************
consensus_8269#0 TGTTTACATTGTATAATTTGTACAAGTTAGCAGTTTAATAATGCATTTGCAAATGTGCC 1739
consensus_8269#1 TGTTTNCATTGT-TACCT----CAAGGTGGGAAAT------------------------ 629
***** ****** ** * **** * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||