These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1596 fasta sequence [TCCTCGATTTTTCTCCCGCAACTCACTGCGCCGCCGCGGAGAGGCAAACCCGAAGGAGACTAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCCGGCAAGGAAAGCCAAAGCCAATCGAGGCCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCAACGCGTGCAACGCGGGGTTCGATGACGAGGAGCAGCAGCGCCTCCACTACCGCTCCGAGTGGCACCGCTACAACCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAGTGACTGAGGCTCTGTTTTTGGCTAGACAAACTGCTTTAGCAGAGGGGAGCAACTCTGATAGCACTCCAATGCTCTACAGTTGTGCTCTTTGTGGAAAGGAGTACAGGAGCTCAAAAGCTCATGCCCAACATCTTAATTCACGATCACATCTCATGAAAGCTTCTCAGGAGCCTAATGCATCCATTGCTGGAATTACCATAGTCAAGCCTCGTCCTGAGCGAGTTCAACGCAGGGCTCCATCTGCAGTAGAAGAGGATGAAGATGAAGATGAGGAGGAAGAGTGGGTTGAAGTGGACCCAAGTGAGTTAGAGTCGACTTCGGAAATGCAAGTAGATGAGCATTCCTCCAAATCAGATGATGAGATAGATGAGTTTGAAGAGTTGGATCCCACATTCTGCTTCATGTGTGATCTTGAGCATGACACCATTGAGAATTGCATGGTCCACATGCACAAAAAGCATGGGTTTTTCATACCTGATAGCGAATACTTGAAAGATCCAAATGGTCTTCTTATATATGTTGGTCTGAAGGTGAAGCGTGATTTTATATGCCTATACTGCAATGACAGATGCCAGCCTTTCCAAAGTCTAGAGGCTGTGAGAAAGCATATGGATGCAAAAGGACACTGCAAAGTACGATATGGAGATGGTGGGGATGATGAAGATGCTGACCTTGAAGATTTCTATGATTACAGCAGCAGTTATGCTGATGTGGAGGGTAAGGAGTTGGTTGCTGCAGATGACAAGGATAACATTGAACTGGGAAGTGGTGGGGCTGAGCTTGTAATAACGAACAAGAGTGAGAAAGGAACTCGTGTCAGAACTCTTGGTTCTCGGGAATTTATTCGCTACTATCGCCAGAAACCACGTCCTTCTGTTGCAACAGATCGTGCTCTTGCGCTTTCTCTGGCTTCCAGCTACAAGAGCATGGGTCTGGTGACAGTTCAGTCAAAGGAGCAAGTTGTAAGGCTGAAAGTTCTCCGCGCAATGAACAAGACAGGTGTGGAGACCATGCGAACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTTGTGCATCTGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAACAAGACTGTATCCGGTATAAGAGTTATGACTTCGGTAAACACATCACCTTCTGTAAAA] [+] EMBL AK103176 [TCCTCGATTTTTCTCCCGCAACTCACTGCGCCGCCGCGGAGAGGCAAACCCGAAGGAGACTAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCCGGCAAGGAAAGCCAAAGCCAATCGAGGCCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCAACGCGTGCAACGCGGGGTTCGATGACGAGGAGCAGCAGCGCCTCCACTACCGCTCCGAGTGGCACCGCTACAACCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAGTGACTGAGGCTCTGTTTTTGGCTAGACAAACTGCTTTAGCAGAGGGGAGCAACTCTGATAGCACTCCAATGCTCTACAGTTGTGCTCTTTGTGGAAAGGAGTACAGGAGCTCAAAAGCTCATGCCCAACATCTTAATTCACGATCACATCTCATGAAAGCTTCTCAGGAGCCTAATGCATCCATTGCTGGAATTACCATAGTCAAGCCTCGTCCTGAGCGAGTTCAACGCAGGGCTCCATCTGCAGTAGAAGAGGATGAAGATGAAGATGAGGAGGAAGAGTGGGTTGAAGTGGACCCAAGTGAGTTAGAGTCGACTTCGGAAATGCAAGTAGATGAGCATTCCTCCAAATCAGATGATGAGATAGATGAGTTTGAAGAGTTGGATCCCACATTCTGCTTCATGTGTGATCTTGAGCATGACACCATTGAGAATTGCATGGTCCACATGCACAAAAAGCATGGGTTTTTCATACCTGATAGCGAATACTTGAAAGATCCAAATGGTCTTCTTATATATGTTGGTCTGAAGGTGAAGCGTGATTTTATATGCCTATACTGCAATGACAGATGCCAGCCTTTCCAAAGTCTAGAGGCTGTGAGAAAGCATATGGATGCAAAAGGACACTGCAAAGTACGATATGGAGATGGTGGGGATGATGAAGATGCTGACCTTGAAGATTTCTATGATTACAGCAGCAGTTATGCTGATGTGGAGGGTAAGGAGTTGGTTGCTGCAGATGACAAGGATAACATTGAACTGGGAAGTGGTGGGGCTGAGCTTGTAATAACGAACAAGAGTGAGAAAGGAACTCGTGTCAGAACTCTTGGTTCTCGGGAATTTATTCGCTACTATCGCCAGAAACCACGTCCTTCTGTTGCAACAGATCGTGCTCTTGCGCTTTCTCTGGCTTCCAGCTACAAGAGCATGGGTCTGGTGACAGTTCAGTCAAAGGAGCAAGTTGTAAGGCTGAAAGTTCTCCGCGCAATGAACAAGACAGGTGTGGAGACCATGCGAACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTTGTGCATCTGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAACAAGACTGTATCCGGTATAAGAGTTATGACTTCGGTAAACACATCACCTTCTGT ] [+] EMBL CF313557 [ TCCCGCAACTCACTGCGCCGCCGCGGAGAGGCAAACCCGAAGGAGACTAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCCGGCAAGGAAAGCCAAAGCCAATCGAGGCCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCAACGCGTGCAACGCGGGGTTCGATGACGAGGAGCAGCAGCGCCTCCACTACCGCTCCGAGTGGCACCGCTACAACCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAGTGACTGAGGCTCTGTTTTTGGCTAGACAAACTGCTTTAGCAGAGGGGAGCAACTCTGATAGCACTCCAATGCTCTACAGTTGTGCTCTTTGTGGAAAGGAGTACAGGAGCTCAAAAGCTCATGCCCAACATCTTAATTCACGATCACATCTCATGAAAGCTTCTCAGGAGCCTAATGCATCCATTGCTGGAATTACCATAGTCAAGCCTCGTCCTGAGCGAGTTCAACGCAGGGCTCCATCTGCAGTAGAAGAGGATGAAG ] [+] EMBL C28472 [ TCCCGCAACTCACTGCGCCGCCG GGAGAGNANAACCCGAA GAGACTAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCC GCAAGGAAAGCCAAAGCCAATCGAGGCCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCAACG GTGCAACG GNGTTTCGATGACGAGGAGCAGCAGCGNCTCCACTACCGCTCCGAGTGGCACCGCTACAACCTCAAGCGCAAGGTNGCTGGAGTTCCTGGAGTGACTGAGGCTCTGTTTTTGGCTAGACAAACTGCTTTA NAGAGGGGAGCAACTCTGATAG ACTNCAATGCTCT CAGTTGTGCTCTTTGTGGAAAGGAG NCAGGAGCT AAAAG TCATG CCAACAT TTAATTaa ] [-] EMBL CF313558 [ CTACAAGAGCATGGGTCTGGTGACAGTTCAGTCAAAGGAGCAAGTTGTAAGGCTGAAAGTTCTCCGCGCAATGAACAAGACAGGTGTGGAGACCATGCGAACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGAAAAAACAGCATCATCTTTGTGGCAATGGCTG TTTTTTGTGCATCAGCAAACCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAACAAGACTGTATCCGGTATAAGAGTTATGACTTCGGTAAACACATCACCTTCAAAAAAA] consensusID : consensus_8271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [ACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTGTGCATNTGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAAAAAAAAAAAAAAA] [+] EMBL AU092974 [ACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTGTGCATNTGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8271#0 TCCTCGATTTTTCTCCCGCAACTCACTGCGCCGCCGCGGAGAGGCAAACCCGAAGGAGAC 60 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 TAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCCGGCAAGGAAAGCCAAAGCCAATCGAGG 120 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 CCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCA 180 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 ACGCGTGCAACGCGGGGTTCGATGACGAGGAGCAGCAGCGCCTCCACTACCGCTCCGAGT 240 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 GGCACCGCTACAACCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAGTGACTGAGGCTCTGT 300 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 TTTTGGCTAGACAAACTGCTTTAGCAGAGGGGAGCAACTCTGATAGCACTCCAATGCTCT 360 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 ACAGTTGTGCTCTTTGTGGAAAGGAGTACAGGAGCTCAAAAGCTCATGCCCAACATCTTA 420 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 ATTCACGATCACATCTCATGAAAGCTTCTCAGGAGCCTAATGCATCCATTGCTGGAATTA 480 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 CCATAGTCAAGCCTCGTCCTGAGCGAGTTCAACGCAGGGCTCCATCTGCAGTAGAAGAGG 540 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 ATGAAGATGAAGATGAGGAGGAAGAGTGGGTTGAAGTGGACCCAAGTGAGTTAGAGTCGA 600 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 CTTCGGAAATGCAAGTAGATGAGCATTCCTCCAAATCAGATGATGAGATAGATGAGTTTG 660 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 AAGAGTTGGATCCCACATTCTGCTTCATGTGTGATCTTGAGCATGACACCATTGAGAATT 720 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 GCATGGTCCACATGCACAAAAAGCATGGGTTTTTCATACCTGATAGCGAATACTTGAAAG 780 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 ATCCAAATGGTCTTCTTATATATGTTGGTCTGAAGGTGAAGCGTGATTTTATATGCCTAT 840 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 ACTGCAATGACAGATGCCAGCCTTTCCAAAGTCTAGAGGCTGTGAGAAAGCATATGGATG 900 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 CAAAAGGACACTGCAAAGTACGATATGGAGATGGTGGGGATGATGAAGATGCTGACCTTG 960 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 AAGATTTCTATGATTACAGCAGCAGTTATGCTGATGTGGAGGGTAAGGAGTTGGTTGCTG 1020 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 CAGATGACAAGGATAACATTGAACTGGGAAGTGGTGGGGCTGAGCTTGTAATAACGAACA 1080 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 AGAGTGAGAAAGGAACTCGTGTCAGAACTCTTGGTTCTCGGGAATTTATTCGCTACTATC 1140 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 GCCAGAAACCACGTCCTTCTGTTGCAACAGATCGTGCTCTTGCGCTTTCTCTGGCTTCCA 1200 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 GCTACAAGAGCATGGGTCTGGTGACAGTTCAGTCAAAGGAGCAAGTTGTAAGGCTGAAAG 1260 consensus_8271#1 ------------------------------------------------------------ consensus_8271#0 TTCTCCGCGCAATGAACAAGACAGGTGTGGAGACCATGCGAACCAAGATTGGAATGAAGA 1320 consensus_8271#1 -----------------------------------------ACCAAGATTGGAATGAAGA 19 ******************* consensus_8271#0 GCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAG 1380 consensus_8271#1 GCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAG 79 ************************************************************ consensus_8271#0 GATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTTGTGCATC 1440 consensus_8271#1 GATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTT-GTGCATN 138 **************************************************** ****** consensus_8271#0 TGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTA 1500 consensus_8271#1 TGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTA 198 ************************************************************ consensus_8271#0 ATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAACAAGACTGTATCCGGTATAAGA 1560 consensus_8271#1 ATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAAAAAAAAAAAAAAA--------- 249 ************************************** ** * * consensus_8271#0 GTTATGACTTCGGTAAACACATCACCTTCTGTAAAA 1596 consensus_8271#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||