These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 696 fasta sequence [CCGCGCCATCTTCATCACCACGACCTCCTCTCCATTTACCCTCAAGAACCCCGGATAATGGTGCACCGGAGAGGGAGATCAAACCCCTTCTTCCTCGGCGCCCACCGCCGTTGCCATGGCCGACTCCGCCTTTACCGGTGAGCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGATGGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAAATGGTGTGCCTGTGGATTGGGTAGTCAAGCGAAAGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTAATTGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATAAAAAAAAAAA] [+] EMBL CF330263 [CCGCGCCATCTTCATCACCACGACCTCCTCTCCATTTACCCTCAAGAACCCCGGATAATGGTGCACCGGAGAGGGAGATCAAACCCCTTCTTCCTCGGCGCCCACCGCCGTTGCCATGGCCGACTCCGCCTTTACCGGTGAGCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGATGGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAAATGGTGTGCCTGTGGATTGGGTAGTCAAGCGAAAGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTAATTGCTATGTATA ] [+] EMBL AA750257 [ CCTCTCCATTTACCCTCAAGAACCCCGGATAATGGTGCACCGGAGAGGGAGATCAAACCCCTTCTTCCTCGGCGCCCACCGCCGTTGCCATGGCCGACTCCGCCTTTNCCGGTGAGCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGATGGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAG ] [-] EMBL CF330264 [ GCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGATGGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAAATGGTGTGCCTGTGGATTGGGTAGTCAAGCGAAAGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATTTGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATAAAAAAAAAAA] consensusID : consensus_8276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 496 fasta sequence [TTACCGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAATTTGTGTGCCTGTGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATTTGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTGATATATCTTTAGCCATTTTTGTCAAAAAAAAAAA] [-] EMBL CF314460 [TTACCGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAATTTGTGTGCCTGTGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATTTGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTGATATATCTTTAGCCATTTTTGTCAAAAAAAAAAA] [+] EMBL AU078106 [ TGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTCTAGGACGTGAACTTAATGGGGTAAACNCCTAATTGGTGTGCCTGTGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTNGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATTTGCTATGTATATCTATNCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8276#0 CCGCGCCATCTTCATCACCACGACCTCCTCTCCATTTACCCTCAAGAACCCCGGATAATG 60 consensus_8276#1 ------------------------------------------------------------ consensus_8276#0 GTGCACCGGAGAGGGAGATCAAACCCCTTCTTCCTCGGCGCCCACCGCCGTTGCCATGGC 120 consensus_8276#1 ------------------------------------------------------------ consensus_8276#0 CGACTCCGCCTTTACCGGTGAGCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGAT 180 consensus_8276#1 ------------------------------------------------------------ consensus_8276#0 GGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAGCCATCGCC 240 consensus_8276#1 ----------------------------------TTACCGCTGTGGATCGAGCCATCGCC 26 * ********************* consensus_8276#0 GTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGC 300 consensus_8276#1 GTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGC 86 ************************************************************ consensus_8276#0 TTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTG 360 consensus_8276#1 TTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTG 146 ************************************************************ consensus_8276#0 CTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCG 420 consensus_8276#1 CTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCG 206 ************************************************************ consensus_8276#0 ACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAAATGGTGTGCCTGTGGAT 480 consensus_8276#1 ACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAATTTGTGTGCCTGTGGA- 265 ******************************************* * ************* consensus_8276#0 TGGGTAGTCAAGCGAAAGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGG 540 consensus_8276#1 --------------------TTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGG 305 **************************************** consensus_8276#0 CCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTAAT 600 consensus_8276#1 CCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATT 365 ********************************************************** * consensus_8276#0 TGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAG 660 consensus_8276#1 TGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAG 425 ************************************************************ consensus_8276#0 ATTCACATGAGTATGAGTTAAGAATAAAAAAAAAAA------------------------ 696 consensus_8276#1 ATTCACATGAGTATGAGTTAAGAATATTTGAGATGTGATATATCTTTAGCCATTTTTGTC 485 ************************** * * consensus_8276#0 ----------- consensus_8276#1 AAAAAAAAAAA 496 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||