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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1195 fasta sequence
[CTCCGCCGCCGTTGAGCTCGAGCTCTAGTACTAGACCACGACCACCTCTGCTCCCATGGCCAGCTCCGTCGGCGACAGCACCGCTGCAGCTAACGGCGGCGGCGGCGCAGCAGCATCAGCGGCGCCACCGGAGGCTGCGGGGAAGGGGAGCGCCACCATATCCGTCACCGTCGTCCTCCTCGTGCTGCTGGTGGCCTCCGTCGCGGCGTTCCTGATGTCGCCGCAGCCGGGCGGCGGCAAGCCACCGGTGGAGGGAGTAAGCGGCGGCGGCGACAGCGACGGCACCCGCGGCGGCGGCGGCGGCTTAGAGGGTGTCAAGGGCGCCGAGCCGGTCGAGCAGGCGGTGGGCCCCGGCGCCGCCGCCATCCCCGGATTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTGGATGAAGCTCCGGCGGCCACACTCCGGCGAGCCCCGGAGGTATGATGACGACGCGGGGAGCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGGAGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACAAGGTGAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCACACAGGAGGACACGTTGCGCAAAACACCCTCATCGGCTCAGCCTTCTTCGCCCACTGTTTTTTTTTCCTCGAAGAAATTCTGCCAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATCCTGTGAATCTGATGTACATATTTCCACTGTACTATATACAGTAGTGTGATCCGTCCTGTTAGAATCGACGGAAATAAAAAATGTTCAGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCGTAAAAAAGGGGGAATTTGTTTAAACCCGGAGGAATTACCCCTTTAAGGGGGGGTAAATTTTAACCTGGGGGAAAAAGGGGCAAAACGGGTTCCCGGGGGAAAATGGTTTCCCCTTCAAATTCCCCCAAAAAATAAAACCGGGAACCATAAGGGGAAAACCCGGGGGGCCCAAAGGAGGGACCAACCCCCATT]
[+] EMBL AK108125 [CTCCGCCGCCGTTGAGCTCGAGCTCTAGTACTAGACCACGACCACCTCTGCTCCCATGGCCAGCTCCGTCGGCGACAGCACCGCTGCAGCTAACGGCGGCGGCGGCGCAGCAGCATCAGCGGCGCCACCGGAGGCTGCGGGGAAGGGGAGCGCCACCATATCCGTCACCGTCGTCCTCCTCGTGCTGCTGGTGGCCTCCGTCGCGGCGTTCCTGATGTCGCCGCAGCCGGGCGGCGGCAAGCCACCGGTGGAGGGAGTAAGCGGCGGCGGCGACAGCGACGGCACCCGCGGCGGCGGCGGCGGCTTAGAGGGTGTCAAGGGCGCCGAGCCGGTCGAGCAGGCGGTGGGCCCCGGCGCCGCCGCCATCCCCGGATTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTGGATGAAGCTCCGGCGGCCACACTCCGGCGAGCCCCGGAGGTATGATGACGACGCGGGGAGCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGGAGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACAAGGTGAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCACACAGGAGGACACGTTGCGCAAAACACCCTCATCGGCTCAGCCTTCTTCGCCCACTG TTTTTTTTCCTCGAAGAAATTCTGCCAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATCCTGTGAATCTGATGTACATATTTCCACTGTACTATATACAGTAGTGTGATCCGTCCTGTTAGAATCGACGGAAATAAAAAAT ]
[+] EMBL CB668283 [ GAGCTCCAGTACTAGACCACGACCACCTCTGCTCCCATGGCCAGCTCCGTCGGCGACAGCACCGCTGCAGCTAACGGCGGCGGCGGCGCAGCAGCATCAGCGGCGCCACCGGAGGCTGCGGGGAAGGGGAGCGCCACCATATCCGTCACCGTCGTCCTCCTCGTGCTGCTGGTGGCCTCCGTCGCGGCGTTCCTGATGTCGCCGCAGCCGGGCGGCGGCAAGCCACCGGTGGAGGGAGTAAGCGGCGGCGGCGACAGCGACGGCACCCGCGGCGGCGGCGGCGGCTTAGAGGGTGTCAAGGGCGCCGAGCCGGTCGAGCAGGCGGTGGGCCCCGGCGCCGCCGCCATCCCCGGATTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTGGATGAAGCTCCGGCGGCCACACTCCGGCGAGCCCCGGAGGTATGATGACGACGCGGGGAGCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGGAGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACAAGGTGAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCACACAGGAGGACACGTTGCGCAAAACACCCTCATCGGCTCAGCCTTCTTCGCCCACTGTTTTTTTTTCCTCGAAGAAATTCTGCCAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATCCTGTGAATCTGATGTACATATTTCCCCTGTACTATATACAGTAGTGT ]
[-] EMBL CB668284 [ gngTTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTGGATGAAGCTCCGGCGGCCACACTCCGGCGAGCCCCGGAGGTATGATGACGACGCGGGGAGCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGGAGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACAAGGTGAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCACACAGGAGGACACGTTGCGCAAAACACCCTCATCGGCTCAGCCTTCTTCGCCCACTGTTTTTTTTTCCTCGAAGAAATTCTGCCAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATC ]
[+] EMBL CF310500 [ CAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATCCTGTGAATCTGATGTACATATTTCCACTGTACTATATACAGTAGTGTGATCCGTCCTGTTAGAATCGACGGAAATAAAAAATGTTCAGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCGTAAAAAAGGGGGAATTTGTTTAAACCCGGAGGAATTACCCCTTTAAGGGGGGGTAAATTTTAACCTGGGGGAAAAAGGGGCAAAACGGGTTCCCGGGGGAAAATGGTTTCCCCTTCAAATTCCCCCAAAAAATAAAACCGGGAACCATAAGGGGAAAACCCGGGGGGCCCAAAGGAGGGACCAACCCCCATT]
consensusID : consensus_8282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[ACACTCGCGGCGAGCCCCGGAGGTATGATGACGACCGGGGAGCTCCGGCTCGGCGGCGACGCGGCCAAGAGGAGCCTGGAGATGACCCAAGAGACGGTGGAGCAGCGGCGGCGTCCGCGGCGAGAGCGTCGGGGAACCCCGTGGGGAAGGCCAGCGACAAGGTGTAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCTACTACAGGTAGGACACGTTGCGCCAAGAACACCCTCATGCGGCTGCAGCCTTGCTTCGGCCCCGCTGGTGTGTGTTGTTTGTTCCTCCGAGAGAAATTGCGGCCAGTGGTGTGAATTGAACTGACGCCTCTGGTTCTATGGATGGTATGGGATTGGAACTGAATGATTTGGTATGCCTGGTGAATCTGGATGGTACATATGTTCCCCTGTACTATATCCCGTATGTGATCCGTCCTTTAGAATCGACGGAAATAAAAAATGTTCAGCCAGATTCCAGTTAAAAAA]
[+] EMBL BI802482 [ACACTCGCGGCGAGCCCCGGAGGTATGATGACGACCGGGGAGCTCCGGCTCGGCGGCGACGCGGCCAAGAGGAGCCTGGAGATGACCCAAGAGACGGTGGAGCAGCGGCGGCGTCCGCGGCGAGAGCGTCGGGGAACCCCGTGGGGAAGGCCAGCGACAAGGTGTAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCTACTACAGGTAGGACACGTTGCGCCAAGAACACCCTCATGCGGCTGCAGCCTTGCTTCGGCCCCGCTGGTGTGTGTTGTTTGTTCCTCCGAGAGAAATTGCGGCCAGTGGTGTGAATTGAACTGACGCCTCTGGTTCTATGGATGGTATGGGATTGGAACTGAATGATTTGGTATGCCTGGTGAATCTGGATGGTACATATGTTCCCCTGTACTATATCCCGTATGTGATCCGTCCTTTAGAATCGACGGAAATAAAAAATGTTCAGCCAGATTCCAGTTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8282#0 CTCCGCCGCCGTTGAGCTCGAGCTCTAGTACTAGACCACGACCACCTCTGCTCCCATGGC 60
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 CAGCTCCGTCGGCGACAGCACCGCTGCAGCTAACGGCGGCGGCGGCGCAGCAGCATCAGC 120
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 GGCGCCACCGGAGGCTGCGGGGAAGGGGAGCGCCACCATATCCGTCACCGTCGTCCTCCT 180
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 CGTGCTGCTGGTGGCCTCCGTCGCGGCGTTCCTGATGTCGCCGCAGCCGGGCGGCGGCAA 240
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 GCCACCGGTGGAGGGAGTAAGCGGCGGCGGCGACAGCGACGGCACCCGCGGCGGCGGCGG 300
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 CGGCTTAGAGGGTGTCAAGGGCGCCGAGCCGGTCGAGCAGGCGGTGGGCCCCGGCGCCGC 360
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 CGCCATCCCCGGATTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTG 420
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 GATGAAGCTCCGGCGGCCACACTC-CGGCGAGCCCCGGAGGTATGATGACGACGCGGGGA 479
consensus_8282#1 ------------------ACACTCGCGGCGAGCCCCGGAGGTATGATGACGAC-CGGGGA 41
****** **************************** ******
consensus_8282#0 GCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGG 539
consensus_8282#1 GCTCCGGCTCGGCGGCG-ACGCGGCCAAGAGGAGCCTGGAGATGACCCAAGAGACGGTGG 100
***************** ***************************** ************
consensus_8282#0 AGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACA 599
consensus_8282#1 AGCAG-CGGCGGCGTCCGCGGCGAGAGCGTCGGGGAACCCCGTGGGGAAGGCCAGCGACA 159
***** *********************** ******** *********************
consensus_8282#0 AGGTG-AAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCA 658
consensus_8282#1 AGGTGTAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCT 219
***** *****************************************************
consensus_8282#0 --CACAGG-AGGACACGTTGCGC--AAAACACCCTCAT-CGGCT-CAGCCTT-CTTCGCC 710
consensus_8282#1 ACTACAGGTAGGACACGTTGCGCCAAGAACACCCTCATGCGGCTGCAGCCTTGCTTCGGC 279
***** ************** * *********** ***** ******* ***** *
consensus_8282#0 CAC---------TGTTTTTTTTTCCTC--GAAGAAATT-CTGCCAGTGTT---AATT-AA 754
consensus_8282#1 CCCGCTGGTGTGTGTTGTTTGTTCCTCCGAGAGAAATTGCGGCCAGTGGTGTGAATTGAA 339
* * **** *** ****** ******* * ******* * **** **
consensus_8282#0 CTA--GCCTCTG-TTCTATGAT--GTATGGATT--GAACTGAAT-ATTTG---TATCCTG 803
consensus_8282#1 CTGACGCCTCTGGTTCTATGGATGGTATGGGATTGGAACTGAATGATTTGGTATGCCTGG 399
** ******* ******* ****** * ********* ***** * * *
consensus_8282#0 TGAATCTGAT--GTACATAT-TTCCACTGTACTATATACAGTAGTGTGATCCGTCCTGTT 860
consensus_8282#1 TGAATCTGGATGGTACATATGTTCCCCTGTACTATATCCCGTA-TGTGATCCGTCCT-TT 457
******** ******** **** *********** * *** ************* **
consensus_8282#0 AGAATCGACGGAAATAAAAAATGTTCAGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 920
consensus_8282#1 AGAATCGACGGAAATAAAAAATGTTCAGCCAGATTCCAGTTAAAAAA------------- 504
**************************** * ** * ******
consensus_8282#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 980
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 AAAAACCCTTGTTTTCCCGTTCGTAAAAAAGGGGGAATTTGTTTAAACCCGGAGGAATTA 1040
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 CCCCTTTAAGGGGGGGTAAATTTTAACCTGGGGGAAAAAGGGGCAAAACGGGTTCCCGGG 1100
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 GGAAAATGGTTTCCCCTTCAAATTCCCCCAAAAAATAAAACCGGGAACCATAAGGGGAAA 1160
consensus_8282#1 ------------------------------------------------------------
consensus_8282#0 ACCCGGGGGGCCCAAAGGAGGGACCAACCCCCATT 1195
consensus_8282#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||