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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1799 fasta sequence
[TCTAATCCTCATTTGGGTTTTCCGCATCCCTTAGGGCGTCCACTATCTAGAGGCACTTCAGGAGAAACAATGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTAGGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAACCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTGGAGCCATTGGAACCAGAAACTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGGAAGCAAGTGCATTTGAGATCTTTGTCGATGAAGATAACCTAACAAGAGTGGACCCAGCAAACTCCAGGACAAAAACATGAAGCAGGATAATCCAAAGTTAAGTCAGCAGGCAAGCGCATTTGAGATCTTTGTAGATGAAGATGATCCTTACTGCAACAACCAAAATATGGTGCAGCATAGGCACTTTAATAAGGAGAACACACAGGTAAATCAGAATGCAAGTGGATTTGAAATCTTTGTTGATGAAAATGAGGCTCATGGCAATGGTCGTAATGCCATGAGCCATAAGAGTAGTGGATGTCCTCCAAAGCCATCGCGTGATTCAAAGCAGCAAGCCAATTTTGACTTCCAGAAACCATTCGTGGGAGGGTTTGCAATACTGCCTGATGATGAAGATGAACAGCTTGAGAAAAATGATAATGGTGTTAAGATCAATTCTGGAACTGTGCAACTAACTGATGATAAGGACACTTCACTCTGTTCGAGACAAACTGATTCAAAAATAAGATGTGATGACTTACGTCCTGCAATATCTGGACTTCGAGAAGACACTGTCTTTCATAGATTTGTTGGATCAGCTGTTGTTGGAGAGCCTAAAGTGGAAAATGCTTGCCACCATGGGTTGGTCGAACCAACTGTCAATTTAAAGGAGGCTATGGATGATATAAATAACATGTTTGGGATACCACTGAACTTCAAAGGTGATAAACCTAAAAACAAGAAAACCACTGCATTGTCAGAGAGAAAAGCGGCACTGCTCAGTGGTTTCTCCATATTAGCTGATGATGAACCAGGCGAAAATCCAGCAGCCCAAGTTAAACCAAGCAATGCTTCCAAATTTGAATGTCAGAGTGGTCTCTTTGAGCCCACTATTACTACCCGCGATGTGATGGCTGAGATCAATGACATGTTCGGAATGCCACTGGACTTCTAAGACTAGTGCTTAAATGGAACAGAATAACTCTTTTGACAGAAGAGTTTTCCTTTACCCTCTCACTCACTCCTTGAGAGTGAGGTAAGGTTCCCAAGATGTCAGAATATGAAATGAAGTGCTATGTAGTATATTGGTGCATTCTTGATGATAAGAAGAGCTTGGTTTTTTTTTGTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGAATATTTACATGAGTTATTGAAATTACAATTCTCAAAGCTTTATCTGATTCATATTTCCCTGATAAAATTTGAAGTGTAGCAAATGGGCATTAGTTTGCTGATTTATACTCTTGGTAAATGAGCACTATCTCCTTGAATTGCAAATGTATCTTACTTTTGATGCCCTGAGTTGTTTTGCTGTATCACTTAAATGAGAATTCCTTTTTCCCNCTGTTGATGTAGTTGTTGCGGATGTAATTGATCTNTAGAATTTCCTCCAGAGTGTATTTTGGATAGCATCATCCAATNTGAATGCGGGTATTGGGTTAACTGCTGCTTAAATATGATTATATTTTCCTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK102502 [TCTAATCCTCATTTGGGTTTTCCGCATCCCTTAGGGCGTCCACTATCTAGAGGCACTTCAGGAGAAACAATGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTAGGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAACCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTGGAGCCATTGGAACCAGAAACTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGGAAGCAAGTGCATTTGAGATCTTTGTCGATGAAGATAACCTAACAAGAGTGGACCCAGCAAACTCCAGGACAAAAACATGAAGCAGGATAATCCAAAGTTAAGTCAGCAGGCAAGCGCATTTGAGATCTTTGTAGATGAAGATGATCCTTACTGCAACAACCAAAATATGGTGCAGCATAGGCACTTTAATAAGGAGAACACACAGGTAAATCAGAATGCAAGTGGATTTGAAATCTTTGTTGATGAAAATGAGGCTCATGGCAATGGTCGTAATGCCATGAGCCATAAGAGTAGTGGATGTCCTCCAAAGCCATCGCGTGATTCAAAGCAGCAAGCCAATTTTGACTTCCAGAAACCATTCGTGGGAGGGTTTGCAATACTGCCTGATGATGAAGATGAACAGCTTGAGAAAAATGATAATGGTGTTAAGATCAATTCTGGAACTGTGCAACTAACTGATGATAAGGACACTTCACTCTGTTCGAGACAAACTGATTCAAAAATAAGATGTGATGACTTACGTCCTGCAATATCTGGACTTCGAGAAGACACTGTCTTTCATAGATTTGTTGGATCAGCTGTTGTTGGAGAGCCTAAAGTGGAAAATGCTTGCCACCATGGGTTGGTCGAACCAACTGTCAATTTAAAGGAGGCTATGGATGATATAAATAACATGTTTGGGATACCACTGAACTTCAAAGGTGATAAACCTAAAAACAAGAAAACCACTGCATTGTCAGAGAGAAAAGCGGCACTGCTCAGTGGTTTCTCCATATTAGCTGATGATGAACCAGGCGAAAATCCAGCAGCCCAAGTTAAACCAAGCAATGCTTCCAAATTTGAATGTCAGAGTGGTCTCTTTGAGCCCACTATTACTACCCGCGATGTGATGGCTGAGATCAATGACATGTTCGGAATGCCACTGGACTTCTAAGACTAGTGCTTAAATGGAACAGAATAACTCTTTTGACAGAAGAGTTTTCCTTTACCCTCTCACTCACTCCTTGAGAGTGAGGTAAGGTTCCCAAGATGTCAGAATATGAAATGAAGTGCTATGTAGTATATTGGTGCATTCTTGATGATAAGAAGAGCTTGGTTTTTTTTTGTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGAATATTTACATGAGTTATTGAAATTACAATTCTCAAAGCTTTATCTGATTCATATTTCCCTGATAAAATTTGAAGTGTAGCAAATGGGCATTAGTTTGCTGATTTATACTCTTGGTAAATGAGCACTATCTCCTTGAATTGCAAATGTATCTTACTTTTGATGCCCTGAGTTGTTTTGCTGTATCACTTAAATGAGAATTCCT ]
[+] EMBL CA762346 [ AGACAAACTGATTCAAAAATAAGATGTGATGACTTACATCCAGCAATATCTGGACTTCGAGAAGACACGGTCTTTCATAGATTTGTTGGATCAGCTGTTGTTGGAGAGCCTAAAGTGGAAAATGCTTGCCACCATGGGTTGGTCGAACCAACTGTCAATTTAAAGGAGGCTATGGATGATATAAATAACATGTTTGGGATACCACTGAACTTCAAAGGTGAGAAACCTAAAAACAA ]
[+] EMBL AU172368 [ taCTGATTCATATTTCCCTGATAAAATTTGAAGTGTAACAAATGGGCATTAGTTTGCTGATTTATACTCTTGGTAAATGAGCNCTATNTCCTTGAATTGCAAATGTATCTTACTTTTAATGCCCTGAGTTGTTTTGCTGTATCNCTTAAATGAGAATTCCTTTTTCCCNCTGTTGATGTAGTTGTTGCGGATGTAATTGATCTNTAGAATTTCCTCCAGAGTGTATTTTGGATAGCATCATCCAATNTGAATGCGGGTATTGGGTTAACTGCTGCTTAAATATGATTATATTTTCCTAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence
[TCTAATCCTCATTTGGGTTTTCCGCATCCGTTAGGGCGTCCACTATATAGAGGCACTTCAGGAGATACAAAGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTAGGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAACCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTGGAGCCATTGGAACCAGAAACTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGGAAGCAAGTGCATTTGAGATATTTGTCGATGAAGATGAACCTAACAAGAGTGGACCCAGCAAACTCCAGGACAAGAACAAACTCCAGGACAAGAACATGAAGCAG]
[+] EMBL AU172367 [TCTAATCCTCATTTGGGTTTTCCGCATCCGTTAGGGCGTCCACTATATAGAGGCACTTCAGGAGATACAAAGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTAGGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAACCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTGGAGCCATTGGAACCAGAAACTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGGAAGCAAGTGCATTTGAGATATTTGTCGATGAAGATGAACCTAACAAGAGTGGACCCAGCAAACTCCAGGACAAGAACAAACTCCAGGACAAGAACATGAAGCAG]
consensusID : consensus_8285#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[TTTTTTTTTTTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGAATATTTACATGAGTTATTGAAATTACANTTCTCAGTGCTTTACTGATTCANATTNCCCTGATAAAATTTGAAGTGTAACAAATGGGCATTAGTTTGCTGATTTANACTCTTGGTAAATGAGCACTATCTCCTTGANTTGCAAAAAAAAAAAAAAAAAAAAAANANAAAAA]
[-] EMBL AU068266 [TTTTTTTTTTTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGAATATTTACATGAGTTATTGAAATTACANTTCTCAGTGCTTTACTGATTCANATTNCCCTGATAAAATTTGAAGTGTAACAAATGGGCATTAGTTTGCTGATTTANACTCTTGGTAAATGAGCACTATCTCCTTGANTTGCAAAAAAAAAAAAAAAAAAAAAANANAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8285#0 TCTAATCCTCATTTGGGTTTTCCGCATCCCTTAGGGCGTCCACTATCTAGAGGCACTTCA 60
consensus_8285#1 TCTAATCCTCATTTGGGTTTTCCGCATCCGTTAGGGCGTCCACTATATAGAGGCACTTCA 60
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 GGAGAAACAATGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTA 120
consensus_8285#1 GGAGATACAAAGAGTTTGTCTCGTCATAATAGTGATGATACTGTAGTTGTAAGGTTTGTA 120
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 GGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAA 180
consensus_8285#1 GGCTCTGCATTGGTTGGGAAATCAGAAACTGAAGATGCATGCCATCATGGCCTTGTTGAA 180
consensus_8285#2 -------------------------------------------------------TTTTT 5
**
consensus_8285#0 CCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTG-GAGCCATT 239
consensus_8285#1 CCCACTATAAACACTAAAGAGGCAATGGATGCTATCAGTAGCATGTTTTTG-GAGCCATT 239
consensus_8285#2 TTTTTTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGA-ATATTTACATGAGTTATT 64
* ** * * * ** * ** *** ** *** *** ***
consensus_8285#0 GGAACCAGAAA-CTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGG 298
consensus_8285#1 GGAACCAGAAA-CTAAGCTCAAGAGGCGCTCAAATCGTGATAAACCAAGTTTTAATCAGG 298
consensus_8285#2 GAAATTACANTTCTCAGTGCTTTACTGATTCANATTNCCCTGA-TAAAATTTGAAGTGTA 123
* ** * * ** ** * * *** ** * * ** *** **
consensus_8285#0 AAGCAAGTGCATTTGAGATCTTTGTCGATGAAGAT-AACCTAACAAGAGTGGACCCAGCA 357
consensus_8285#1 AAGCAAGTGCATTTGAGATATTTGTCGATGAAGATGAACCTAACAAGAGTGGACCCAGCA 358
consensus_8285#2 ACAAATGGGCATTAG-----TTTGCTGATTTANAC--TCTTGGTAAATGAGCACT----- 171
* * * ***** * **** *** * * * * ** * * **
consensus_8285#0 AACTCCAGGACAAAAACATGAAGCAGGATAATCCAAAGTTAAGTCAGCAGGCAAGCGCAT 417
consensus_8285#1 AACTCCAGGACAAGAACAAACTCCAGGACAA---GAACATGAAGCAG------------- 402
consensus_8285#2 ATCTCCTTGANTTGCAAAAAAAAAAAAAAAAAAAAAANANAAAAA--------------- 216
* **** ** * * * * ** ** *
consensus_8285#0 TTGAGATCTTTGTAGATGAAGATGATCCTTACTGCAACAACCAAAATATGGTGCAGCATA 477
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 GGCACTTTAATAAGGAGAACACACAGGTAAATCAGAATGCAAGTGGATTTGAAATCTTTG 537
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 TTGATGAAAATGAGGCTCATGGCAATGGTCGTAATGCCATGAGCCATAAGAGTAGTGGAT 597
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 GTCCTCCAAAGCCATCGCGTGATTCAAAGCAGCAAGCCAATTTTGACTTCCAGAAACCAT 657
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 TCGTGGGAGGGTTTGCAATACTGCCTGATGATGAAGATGAACAGCTTGAGAAAAATGATA 717
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 ATGGTGTTAAGATCAATTCTGGAACTGTGCAACTAACTGATGATAAGGACACTTCACTCT 777
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 GTTCGAGACAAACTGATTCAAAAATAAGATGTGATGACTTACGTCCTGCAATATCTGGAC 837
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 TTCGAGAAGACACTGTCTTTCATAGATTTGTTGGATCAGCTGTTGTTGGAGAGCCTAAAG 897
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 TGGAAAATGCTTGCCACCATGGGTTGGTCGAACCAACTGTCAATTTAAAGGAGGCTATGG 957
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 ATGATATAAATAACATGTTTGGGATACCACTGAACTTCAAAGGTGATAAACCTAAAAACA 1017
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 AGAAAACCACTGCATTGTCAGAGAGAAAAGCGGCACTGCTCAGTGGTTTCTCCATATTAG 1077
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 CTGATGATGAACCAGGCGAAAATCCAGCAGCCCAAGTTAAACCAAGCAATGCTTCCAAAT 1137
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 TTGAATGTCAGAGTGGTCTCTTTGAGCCCACTATTACTACCCGCGATGTGATGGCTGAGA 1197
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 TCAATGACATGTTCGGAATGCCACTGGACTTCTAAGACTAGTGCTTAAATGGAACAGAAT 1257
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 AACTCTTTTGACAGAAGAGTTTTCCTTTACCCTCTCACTCACTCCTTGAGAGTGAGGTAA 1317
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 GGTTCCCAAGATGTCAGAATATGAAATGAAGTGCTATGTAGTATATTGGTGCATTCTTGA 1377
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 TGATAAGAAGAGCTTGGTTTTTTTTTGTTGAATCCTTTGATGCACAGCTGTTGTGTCTAG 1437
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 TGAATATTTACATGAGTTATTGAAATTACAATTCTCAAAGCTTTATCTGATTCATATTTC 1497
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 CCTGATAAAATTTGAAGTGTAGCAAATGGGCATTAGTTTGCTGATTTATACTCTTGGTAA 1557
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 ATGAGCACTATCTCCTTGAATTGCAAATGTATCTTACTTTTGATGCCCTGAGTTGTTTTG 1617
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 CTGTATCACTTAAATGAGAATTCCTTTTTCCCNCTGTTGATGTAGTTGTTGCGGATGTAA 1677
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 TTGATCTNTAGAATTTCCTCCAGAGTGTATTTTGGATAGCATCATCCAATNTGAATGCGG 1737
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 GTATTGGGTTAACTGCTGCTTAAATATGATTATATTTTCCTAAAAAAAAAAAAAAAAAAA 1797
consensus_8285#1 ------------------------------------------------------------
consensus_8285#2 ------------------------------------------------------------
consensus_8285#0 AA 1799
consensus_8285#1 --
consensus_8285#2 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||