cluster # 8295

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Oryza sativa
cluster # 8295 cluster # 8295 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8295#0 length = 1037 sequences # 4

consensus_8295#1 length = 619 sequences # 1

consensusID : consensus_8295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1037
fasta sequence

                              [CACCATCCTCCCCCTTTGCTTTCCACGACTCTCTTTCGCCGCAGTCTCTGCTTCCGTGCATCCATCGGCGTTCGGCGACTCGGTGTATAGTAGTATTGCCAACTGTGCGTAGCAAGCTCGATACAGCGGCGATCATGGGGTTCCCTCTGGTGTGCTACTGCATGGCGATCCCCAAGCCGCTCATCGCCTTGGCCAAGCTCCTCGCCGCCATCAGGGAGGCCCTCCAGCTGATGCTCTTCGTCGTCGGGATCTGCCACCACCCGGAGCGATCGGGCCGCCCGGCTGCCGTCGACGCCCCGCTGCCCGACGAGGTGAAGGACCGCCTCCCGCCCCTCGAGTTCGCCCAGCTGCTCGCGGCCTCGGAGCACGGCTGTCATGGCTGCGACGACGACGAGGCGGTGG-CGGGGTGCATCGTGTGCCTGGAGAGGCTGGAGGCGGATGACGTGGTGCGGCGGCTGGGCAACTGCGCGCACGCGTTCCACCGCGGCTGCATCGACCGGTGGATCGACCTCGGCTGGTTGACGTGCCCGCTGTGCCGCTCCACCCTGCTG-CCGCGCGCGCGCCCCGCCGCCGGCCCGCGCGGGCGACTGGGCCGCCTCGCCACCCGCCTCACGGGCGTCGTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGCGACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGCCTAAGCTAGCTTACTGCTGCTGTTAATCAACGGAGACAAAGCTCTCTTTCCCTTTCGTTTCCTTTTTCTTTTTCTGCCGAGGATTATCCAGCTGGAGGAGAGTGGTACGTGTCGGAATGCGGTGGAATATATCGATGATTAGACGGTAGGAACAATTAATTAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAAA]

[+] EMBL AK107937             [CACCATCCTCCCCCTTTGCTTTCCACGACTCTCTTTCGCCGCAGTCTCTGCTTCCGTGCATCCATCGGCGTTCGGCGACTCGGTGTATAGTAGTATTGCCAACTGTGCGTAGCAAGCTCGATACAGCGGCGATCATGGGGTTCCCTCTGGTGTGCTACTGCATGGCGATCCCCAAGCCGCTCATCGCCTTGGCCAAGCTCCTCGCCGCCATCAGGGAGGCCCTCCAGCTGATGCTCTTCGTCGTCGGGATCTGCCACCACCCGGAGCGATCGGGCCGCCCGGCTGCCGTCGACGCCCCGCTGCCCGACGAGGTGAAGGACCGCCTCCCGCCCCTCGAGTTCGCCCAGCTGCTCGCGGCCTCGGAGCACGGCTGTCATGGCTGCGACGACGACGAGGCGGTGG CGGGGTGCATCGTGTGCCTGGAGAGGCTGGAGGCGGATGACGTGGTGCGGCGGCTGGGCAACTGCGCGCACGCGTTCCACCGCGGCTGCATCGACCGGTGGATCGACCTCGGCTGGTTGACGTGCCCGCTGTGCCGCTCCACCCTGCTG CCGCGCGCGCGCCCCGCCGCCGGCCCGCGCGGGCGACTGGGCCGCCTCGCCACCCGCCTCACGGGCGTCGTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGCGACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGCCTAAGCTAGCTTACTGCTGCTGTTAATCAACGGAGACAAAGCTCTCTTTCCCTTTCGTTTCCTTTTTCTTTTTCTGCCGAGGATTATCCAGCTGGAGGAGAGTGGTACGTGTCGGAATGCGGTGGAATATATCGATGATTAGACGGTAGGAACAATTAATTAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGG                 ]
[+] EMBL C27617               [                                  TTCGCCGCAGTCTCTGCTTCCGTGCATCCATCGGCGTTCGGCGACTCGGTGTATAGTAGTATTGCCAACTGTGCGTA NAGACTCGATACAGCGGCGATCATGGGGTTCCCTCTGGTGTGCTACTG ATGGCGATCCCCAAGCCGCTCATCGCCTTGG CAAGCTCCTCGCCGCCATCAGGGAGGCCCTCCAGCTGATGCTCTTCGTCGTCGGGATCTGCCACCACCCGGAGCGATCGGGCCGCCCNCTTGCCGTCGACGGCCCGCTGCCCGACGAGGTGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU085760             [                                                                                                                                                                                                                                                                                                                                                                                           CTGCGACGACGACGAGGCGTTGGCCGGGGTGCATCGTGTGCCTGGAGAGGCTGGAGGCGGATGACGTGGTNCGGCGGCTGGGCAACTGCGCGCACGCGTTCCACCGCGGCTGCATCGACCGGTGGATCGACCTCGGCCGGTTGACGTGCCCGCTGTGCCGCTCCACCCTGCTGCCCGCGCGCGCGCCCCGCCGCCGGCCCGCGCGGGCGACTGGGCCGCCTCGCCACCCGCCTCACGGGCGTCGTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGCGACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGCCTAAGCTAGCTTACTGCTGCTGTTAANCAACGGAGACAAAGCTCTCTTTCCCTTTCGTTTCCTTTTTCTTTTTCTGCCGAGGATTATCCAGCTGGAGGAGAGTGGTACGTGTCGGAATGCGGTGGAATATATCGATGATTAGACGGTAGGAACAATTAATTAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGGTTCATTTGGTAAAAA  ]
[+] EMBL BI807242             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TATCCAGCTGGAGGAGAGTGGTACGTGTCGGAAT CGGTGGAATATATCGATGATTAGACGGTAGGAACAATTAATTAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAAA]




>consensus_8295#0
CACCATCCTCCCCCTTTGCTTTCCACGACTCTCTTTCGCCGCAGTCTCTGCTTCCGTGCA
TCCATCGGCGTTCGGCGACTCGGTGTATAGTAGTATTGCCAACTGTGCGTAGCAAGCTCG
ATACAGCGGCGATCATGGGGTTCCCTCTGGTGTGCTACTGCATGGCGATCCCCAAGCCGC
TCATCGCCTTGGCCAAGCTCCTCGCCGCCATCAGGGAGGCCCTCCAGCTGATGCTCTTCG
TCGTCGGGATCTGCCACCACCCGGAGCGATCGGGCCGCCCGGCTGCCGTCGACGCCCCGC
TGCCCGACGAGGTGAAGGACCGCCTCCCGCCCCTCGAGTTCGCCCAGCTGCTCGCGGCCT
CGGAGCACGGCTGTCATGGCTGCGACGACGACGAGGCGGTGGCGGGGTGCATCGTGTGCC
TGGAGAGGCTGGAGGCGGATGACGTGGTGCGGCGGCTGGGCAACTGCGCGCACGCGTTCC
ACCGCGGCTGCATCGACCGGTGGATCGACCTCGGCTGGTTGACGTGCCCGCTGTGCCGCT
CCACCCTGCTGCCGCGCGCGCGCCCCGCCGCCGGCCCGCGCGGGCGACTGGGCCGCCTCG
CCACCCGCCTCACGGGCGTCGTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGCG
ACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGCCTAAGCTAGCTTACT
GCTGCTGTTAATCAACGGAGACAAAGCTCTCTTTCCCTTTCGTTTCCTTTTTCTTTTTCT
GCCGAGGATTATCCAGCTGGAGGAGAGTGGTACGTGTCGGAATGCGGTGGAATATATCGA
TGATTAGACGGTAGGAACAATTAATTAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGC
CTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCA
TGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGG
TTCATTTGGTAAAAAAA

consensusID : consensus_8295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [GGAGCGGATTGACCGTGGTCGGCGCTGGGCAACTGCGCCACGCGTTCCACCCCCGGCTGCATCGACCGTGGATCGACCTCGGCCGGTTGACGTGCCCCTGTGCCGCTCCACCCCCTGCTGCCGCGCGCGCTGCCCCACCGCCGGCCCCGCGCGGGCGACTGGCCGCCTCGCCACCCGCCTCACGGGCGTCTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGGCGACACGGGATCGTTGGTGGAAGGCAGTCGCGCCATTTCACAGCNCCTAAGCTAGCTTTACTGCTGCCTGGTTAAATCAACGGAAGAACAAAAGCTCTCTTTCCCCTTTCGGTTTCCTTTTCTTTTTTTCTCCCGAGGATTATCCCAGCTGGAGGAGAGTGGGTACGTGTCGGAATCGGTGGAATATATCGATGATTAGACGGTAGGGAACAATTTAATTAGAACCCCCACACCACCTGTTGGTTTGGCCCAGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCCNTGNNCAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAA]

[+] EMBL BI805402             [GGAGCGGATTGACCGTGGTCGGCGCTGGGCAACTGCGCCACGCGTTCCACCCCCGGCTGCATCGACCGTGGATCGACCTCGGCCGGTTGACGTGCCCCTGTGCCGCTCCACCCCCTGCTGCCGCGCGCGCTGCCCCACCGCCGGCCCCGCGCGGGCGACTGGCCGCCTCGCCACCCGCCTCACGGGCGTCTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGGCGACACGGGATCGTTGGTGGAAGGCAGTCGCGCCATTTCACAGCNCCTAAGCTAGCTTTACTGCTGCCTGGTTAAATCAACGGAAGAACAAAAGCTCTCTTTCCCCTTTCGGTTTCCTTTTCTTTTTTTCTCCCGAGGATTATCCCAGCTGGAGGAGAGTGGGTACGTGTCGGAATCGGTGGAATATATCGATGATTAGACGGTAGGGAACAATTTAATTAGAACCCCCACACCACCTGTTGGTTTGGCCCAGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCCNTGNNCAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAA]




>consensus_8295#1
GGAGCGGATTGACCGTGGTCGGCGCTGGGCAACTGCGCCACGCGTTCCACCCCCGGCTGC
ATCGACCGTGGATCGACCTCGGCCGGTTGACGTGCCCCTGTGCCGCTCCACCCCCTGCTG
CCGCGCGCGCTGCCCCACCGCCGGCCCCGCGCGGGCGACTGGCCGCCTCGCCACCCGCCT
CACGGGCGTCTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGGCGACACGGGATC
GTTGGTGGAAGGCAGTCGCGCCATTTCACAGCNCCTAAGCTAGCTTTACTGCTGCCTGGT
TAAATCAACGGAAGAACAAAAGCTCTCTTTCCCCTTTCGGTTTCCTTTTCTTTTTTTCTC
CCGAGGATTATCCCAGCTGGAGGAGAGTGGGTACGTGTCGGAATCGGTGGAATATATCGA
TGATTAGACGGTAGGGAACAATTTAATTAGAACCCCCACACCACCTGTTGGTTTGGCCCA
GGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACT
GCATGTAAGTAAATCATGTCATAGAGATAATACACCCNTGNNCAGTGGTATAATGATAAA
CGGTTCATTTGGTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8295#0      CACCATCCTCCCCCTTTGCTTTCCACGACTCTCTTTCGCCGCAGTCTCTGCTTCCGTGCA 60
consensus_8295#1      ------------------------------------------------------------
                                                                                  

consensus_8295#0      TCCATCGGCGTTCGGCGACTCGGTGTATAGTAGTATTGCCAACTGTGCGTAGCAAGCTCG 120
consensus_8295#1      ------------------------------------------------------------
                                                                                  

consensus_8295#0      ATACAGCGGCGATCATGGGGTTCCCTCTGGTGTGCTACTGCATGGCGATCCCCAAGCCGC 180
consensus_8295#1      ------------------------------------------------------------
                                                                                  

consensus_8295#0      TCATCGCCTTGGCCAAGCTCCTCGCCGCCATCAGGGAGGCCCTCCAGCTGATGCTCTTCG 240
consensus_8295#1      ------------------------------------------------------------
                                                                                  

consensus_8295#0      TCGTCGGGATCTGCCACCACCCGGAGCGATCGGGCCGCCCGGCTGCCGTCGACGCCCCGC 300
consensus_8295#1      ------------------------------------------------------------
                                                                                  

consensus_8295#0      TGCCCGACGAGGTGAAGGACCGCCTCCCGCCCCTCGAGTTCGCCCAGCTGCTCGCGGCCT 360
consensus_8295#1      ------------------------------------------------------------
                                                                                  

consensus_8295#0      CGGAGCACGGCTGTCATGGCTGCGACGACGACGAGGCGGTGGCGGGGTGCATCGTGTGCC 420
consensus_8295#1      ------------------------------------------------------------
                                                                                  

consensus_8295#0      TGGAGAGGCTGGAGGCGGATGAC-GTGGTGCGGCGGCTGGGCAACTGCGCGCACGCGTTC 479
consensus_8295#1      ----------GGAGCGGATTGACCGTGGT-CGGCG-CTGGGCAACTGCGC-CACGCGTTC 47
                                ****  *  **** ***** ***** ************** *********

consensus_8295#0      CACCGC-GGCTGCATCGACCGGTGGATCGACCTCGGCTGGTTGACGTGCCCGCTGTGCCG 538
consensus_8295#1      CACCCCCGGCTGCATCGACCG-TGGATCGACCTCGGCCGGTTGACGTGCCC-CTGTGCCG 105
                      **** * ************** *************** ************* ********

consensus_8295#0      CTCCACCC--TGCTGCCGCGCGCGC-GCCCCGCCGCCGGCCC-GCGCGGGCGACTGGGCC 594
consensus_8295#1      CTCCACCCCCTGCTGCCGCGCGCGCTGCCCCACCGCCGGCCCCGCGCGGGCGACTGG-CC 164
                      ********  *************** ***** ********** ************** **

consensus_8295#0      GCCTCGCCACCCGCCTCACGGGCGTCGTTTGGTGAATCAATATTTGGCCCGCGCGACCGC 654
consensus_8295#1      GCCTCGCCACCCGCCTCACGGGCGTC-TTTGGTGAATCAATATTTGGCCCGCGCGACCGC 223
                      ************************** *********************************

consensus_8295#0      GACG-CGACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGCC--TAAGC 711
consensus_8295#1      GACGGCGACACGGGATCGTT--GGTGGAAGG-CAGTCGCGCCATTTCACAGCNCCTAAGC 280
                      **** ************* *  ***** *** ********************   *****

consensus_8295#0      TAGCTT-ACTGCTGCT--GTTAA-TCAACGGAGACA---AAGCTCTCTTTCCCTTTC--G 762
consensus_8295#1      TAGCTTTACTGCTGCCTGGTTAAATCAACGGAAGAACAAAAGCTCTCTTTCCCCTTTCGG 340
                      ****** ********   ***** ********   *   ************** **   *

consensus_8295#0      TTTCCTTTT-TCTTTTTCTGCCGAGGATTATCC-AGCTGGAGGAGAGTGG-TACGTGTCG 819
consensus_8295#1      TTTCCTTTTCTTTTTTTCTCCCGAGGATTATCCCAGCTGGAGGAGAGTGGGTACGTGTCG 400
                      ********* * ******* ************* **************** *********

consensus_8295#0      GAATGCGGTGGAATATATCGATGATTAGACGGTAGG-AACAATT-AATTAGAAGCAGGCA 877
consensus_8295#1      GAAT-CGGTGGAATATATCGATGATTAGACGGTAGGGAACAATTTAATTAGAACCCCCAC 459
                      **** ******************************* ******* ******** *     

consensus_8295#0      AGCAGCTGGTTGGTTGGCCC-GGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAA 936
consensus_8295#1      ACCACCTGTTGGTTTGGCCCAGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAA 519
                      * ** *** * * ******* ***************************************

consensus_8295#0      TTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGT 996
consensus_8295#1      TTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCCNT 579
                      *********************************************************  *

consensus_8295#0      GTACAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAAA 1037
consensus_8295#1      GNNCAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAA- 619
                      *  *************************************