These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1037 fasta sequence [CACCATCCTCCCCCTTTGCTTTCCACGACTCTCTTTCGCCGCAGTCTCTGCTTCCGTGCATCCATCGGCGTTCGGCGACTCGGTGTATAGTAGTATTGCCAACTGTGCGTAGCAAGCTCGATACAGCGGCGATCATGGGGTTCCCTCTGGTGTGCTACTGCATGGCGATCCCCAAGCCGCTCATCGCCTTGGCCAAGCTCCTCGCCGCCATCAGGGAGGCCCTCCAGCTGATGCTCTTCGTCGTCGGGATCTGCCACCACCCGGAGCGATCGGGCCGCCCGGCTGCCGTCGACGCCCCGCTGCCCGACGAGGTGAAGGACCGCCTCCCGCCCCTCGAGTTCGCCCAGCTGCTCGCGGCCTCGGAGCACGGCTGTCATGGCTGCGACGACGACGAGGCGGTGG-CGGGGTGCATCGTGTGCCTGGAGAGGCTGGAGGCGGATGACGTGGTGCGGCGGCTGGGCAACTGCGCGCACGCGTTCCACCGCGGCTGCATCGACCGGTGGATCGACCTCGGCTGGTTGACGTGCCCGCTGTGCCGCTCCACCCTGCTG-CCGCGCGCGCGCCCCGCCGCCGGCCCGCGCGGGCGACTGGGCCGCCTCGCCACCCGCCTCACGGGCGTCGTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGCGACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGCCTAAGCTAGCTTACTGCTGCTGTTAATCAACGGAGACAAAGCTCTCTTTCCCTTTCGTTTCCTTTTTCTTTTTCTGCCGAGGATTATCCAGCTGGAGGAGAGTGGTACGTGTCGGAATGCGGTGGAATATATCGATGATTAGACGGTAGGAACAATTAATTAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAAA] [+] EMBL AK107937 [CACCATCCTCCCCCTTTGCTTTCCACGACTCTCTTTCGCCGCAGTCTCTGCTTCCGTGCATCCATCGGCGTTCGGCGACTCGGTGTATAGTAGTATTGCCAACTGTGCGTAGCAAGCTCGATACAGCGGCGATCATGGGGTTCCCTCTGGTGTGCTACTGCATGGCGATCCCCAAGCCGCTCATCGCCTTGGCCAAGCTCCTCGCCGCCATCAGGGAGGCCCTCCAGCTGATGCTCTTCGTCGTCGGGATCTGCCACCACCCGGAGCGATCGGGCCGCCCGGCTGCCGTCGACGCCCCGCTGCCCGACGAGGTGAAGGACCGCCTCCCGCCCCTCGAGTTCGCCCAGCTGCTCGCGGCCTCGGAGCACGGCTGTCATGGCTGCGACGACGACGAGGCGGTGG CGGGGTGCATCGTGTGCCTGGAGAGGCTGGAGGCGGATGACGTGGTGCGGCGGCTGGGCAACTGCGCGCACGCGTTCCACCGCGGCTGCATCGACCGGTGGATCGACCTCGGCTGGTTGACGTGCCCGCTGTGCCGCTCCACCCTGCTG CCGCGCGCGCGCCCCGCCGCCGGCCCGCGCGGGCGACTGGGCCGCCTCGCCACCCGCCTCACGGGCGTCGTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGCGACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGCCTAAGCTAGCTTACTGCTGCTGTTAATCAACGGAGACAAAGCTCTCTTTCCCTTTCGTTTCCTTTTTCTTTTTCTGCCGAGGATTATCCAGCTGGAGGAGAGTGGTACGTGTCGGAATGCGGTGGAATATATCGATGATTAGACGGTAGGAACAATTAATTAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGG ] [+] EMBL C27617 [ TTCGCCGCAGTCTCTGCTTCCGTGCATCCATCGGCGTTCGGCGACTCGGTGTATAGTAGTATTGCCAACTGTGCGTA NAGACTCGATACAGCGGCGATCATGGGGTTCCCTCTGGTGTGCTACTG ATGGCGATCCCCAAGCCGCTCATCGCCTTGG CAAGCTCCTCGCCGCCATCAGGGAGGCCCTCCAGCTGATGCTCTTCGTCGTCGGGATCTGCCACCACCCGGAGCGATCGGGCCGCCCNCTTGCCGTCGACGGCCCGCTGCCCGACGAGGTGAAG ] [+] EMBL AU085760 [ CTGCGACGACGACGAGGCGTTGGCCGGGGTGCATCGTGTGCCTGGAGAGGCTGGAGGCGGATGACGTGGTNCGGCGGCTGGGCAACTGCGCGCACGCGTTCCACCGCGGCTGCATCGACCGGTGGATCGACCTCGGCCGGTTGACGTGCCCGCTGTGCCGCTCCACCCTGCTGCCCGCGCGCGCGCCCCGCCGCCGGCCCGCGCGGGCGACTGGGCCGCCTCGCCACCCGCCTCACGGGCGTCGTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGCGACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGCCTAAGCTAGCTTACTGCTGCTGTTAANCAACGGAGACAAAGCTCTCTTTCCCTTTCGTTTCCTTTTTCTTTTTCTGCCGAGGATTATCCAGCTGGAGGAGAGTGGTACGTGTCGGAATGCGGTGGAATATATCGATGATTAGACGGTAGGAACAATTAATTAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGGTTCATTTGGTAAAAA ] [+] EMBL BI807242 [ TATCCAGCTGGAGGAGAGTGGTACGTGTCGGAAT CGGTGGAATATATCGATGATTAGACGGTAGGAACAATTAATTAGAAGCAGGCAAGCAGCTGGTTGGTTGGCCCGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGTGTACAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAAA] consensusID : consensus_8295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [GGAGCGGATTGACCGTGGTCGGCGCTGGGCAACTGCGCCACGCGTTCCACCCCCGGCTGCATCGACCGTGGATCGACCTCGGCCGGTTGACGTGCCCCTGTGCCGCTCCACCCCCTGCTGCCGCGCGCGCTGCCCCACCGCCGGCCCCGCGCGGGCGACTGGCCGCCTCGCCACCCGCCTCACGGGCGTCTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGGCGACACGGGATCGTTGGTGGAAGGCAGTCGCGCCATTTCACAGCNCCTAAGCTAGCTTTACTGCTGCCTGGTTAAATCAACGGAAGAACAAAAGCTCTCTTTCCCCTTTCGGTTTCCTTTTCTTTTTTTCTCCCGAGGATTATCCCAGCTGGAGGAGAGTGGGTACGTGTCGGAATCGGTGGAATATATCGATGATTAGACGGTAGGGAACAATTTAATTAGAACCCCCACACCACCTGTTGGTTTGGCCCAGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCCNTGNNCAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAA] [+] EMBL BI805402 [GGAGCGGATTGACCGTGGTCGGCGCTGGGCAACTGCGCCACGCGTTCCACCCCCGGCTGCATCGACCGTGGATCGACCTCGGCCGGTTGACGTGCCCCTGTGCCGCTCCACCCCCTGCTGCCGCGCGCGCTGCCCCACCGCCGGCCCCGCGCGGGCGACTGGCCGCCTCGCCACCCGCCTCACGGGCGTCTTTGGTGAATCAATATTTGGCCCGCGCGACCGCGACGGCGACACGGGATCGTTGGTGGAAGGCAGTCGCGCCATTTCACAGCNCCTAAGCTAGCTTTACTGCTGCCTGGTTAAATCAACGGAAGAACAAAAGCTCTCTTTCCCCTTTCGGTTTCCTTTTCTTTTTTTCTCCCGAGGATTATCCCAGCTGGAGGAGAGTGGGTACGTGTCGGAATCGGTGGAATATATCGATGATTAGACGGTAGGGAACAATTTAATTAGAACCCCCACACCACCTGTTGGTTTGGCCCAGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAATTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCCNTGNNCAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8295#0 CACCATCCTCCCCCTTTGCTTTCCACGACTCTCTTTCGCCGCAGTCTCTGCTTCCGTGCA 60 consensus_8295#1 ------------------------------------------------------------ consensus_8295#0 TCCATCGGCGTTCGGCGACTCGGTGTATAGTAGTATTGCCAACTGTGCGTAGCAAGCTCG 120 consensus_8295#1 ------------------------------------------------------------ consensus_8295#0 ATACAGCGGCGATCATGGGGTTCCCTCTGGTGTGCTACTGCATGGCGATCCCCAAGCCGC 180 consensus_8295#1 ------------------------------------------------------------ consensus_8295#0 TCATCGCCTTGGCCAAGCTCCTCGCCGCCATCAGGGAGGCCCTCCAGCTGATGCTCTTCG 240 consensus_8295#1 ------------------------------------------------------------ consensus_8295#0 TCGTCGGGATCTGCCACCACCCGGAGCGATCGGGCCGCCCGGCTGCCGTCGACGCCCCGC 300 consensus_8295#1 ------------------------------------------------------------ consensus_8295#0 TGCCCGACGAGGTGAAGGACCGCCTCCCGCCCCTCGAGTTCGCCCAGCTGCTCGCGGCCT 360 consensus_8295#1 ------------------------------------------------------------ consensus_8295#0 CGGAGCACGGCTGTCATGGCTGCGACGACGACGAGGCGGTGGCGGGGTGCATCGTGTGCC 420 consensus_8295#1 ------------------------------------------------------------ consensus_8295#0 TGGAGAGGCTGGAGGCGGATGAC-GTGGTGCGGCGGCTGGGCAACTGCGCGCACGCGTTC 479 consensus_8295#1 ----------GGAGCGGATTGACCGTGGT-CGGCG-CTGGGCAACTGCGC-CACGCGTTC 47 **** * **** ***** ***** ************** ********* consensus_8295#0 CACCGC-GGCTGCATCGACCGGTGGATCGACCTCGGCTGGTTGACGTGCCCGCTGTGCCG 538 consensus_8295#1 CACCCCCGGCTGCATCGACCG-TGGATCGACCTCGGCCGGTTGACGTGCCC-CTGTGCCG 105 **** * ************** *************** ************* ******** consensus_8295#0 CTCCACCC--TGCTGCCGCGCGCGC-GCCCCGCCGCCGGCCC-GCGCGGGCGACTGGGCC 594 consensus_8295#1 CTCCACCCCCTGCTGCCGCGCGCGCTGCCCCACCGCCGGCCCCGCGCGGGCGACTGG-CC 164 ******** *************** ***** ********** ************** ** consensus_8295#0 GCCTCGCCACCCGCCTCACGGGCGTCGTTTGGTGAATCAATATTTGGCCCGCGCGACCGC 654 consensus_8295#1 GCCTCGCCACCCGCCTCACGGGCGTC-TTTGGTGAATCAATATTTGGCCCGCGCGACCGC 223 ************************** ********************************* consensus_8295#0 GACG-CGACACGGGATCGGTTGGGTGGGAGGGCAGTCGCGCCATTTCACAGCC--TAAGC 711 consensus_8295#1 GACGGCGACACGGGATCGTT--GGTGGAAGG-CAGTCGCGCCATTTCACAGCNCCTAAGC 280 **** ************* * ***** *** ******************** ***** consensus_8295#0 TAGCTT-ACTGCTGCT--GTTAA-TCAACGGAGACA---AAGCTCTCTTTCCCTTTC--G 762 consensus_8295#1 TAGCTTTACTGCTGCCTGGTTAAATCAACGGAAGAACAAAAGCTCTCTTTCCCCTTTCGG 340 ****** ******** ***** ******** * ************** ** * consensus_8295#0 TTTCCTTTT-TCTTTTTCTGCCGAGGATTATCC-AGCTGGAGGAGAGTGG-TACGTGTCG 819 consensus_8295#1 TTTCCTTTTCTTTTTTTCTCCCGAGGATTATCCCAGCTGGAGGAGAGTGGGTACGTGTCG 400 ********* * ******* ************* **************** ********* consensus_8295#0 GAATGCGGTGGAATATATCGATGATTAGACGGTAGG-AACAATT-AATTAGAAGCAGGCA 877 consensus_8295#1 GAAT-CGGTGGAATATATCGATGATTAGACGGTAGGGAACAATTTAATTAGAACCCCCAC 459 **** ******************************* ******* ******** * consensus_8295#0 AGCAGCTGGTTGGTTGGCCC-GGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAA 936 consensus_8295#1 ACCACCTGTTGGTTTGGCCCAGGCCTGGCACCTGGCATGATCATTGGGAGGTTCATGTAA 519 * ** *** * * ******* *************************************** consensus_8295#0 TTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCTGT 996 consensus_8295#1 TTACTGCGATGATTAGATACTGCATGTAAGTAAATCATGTCATAGAGATAATACACCCNT 579 ********************************************************* * consensus_8295#0 GTACAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAAA 1037 consensus_8295#1 GNNCAGTGGTATAATGATAAACGGTTCATTTGGTAAAAAA- 619 * ************************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||