Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8296 cluster # 8296       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8296#0 length = 3345 sequences # 3  
 consensus_8296#1 length = 1144 sequences # 2  
consensusID : consensus_8296#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 3345
fasta sequence 
                              [GTTTCAAAGGAACTTTGGATTGGTTCACTGGGAAATAGTGCTGCAGAGTCACTAGTTAGATCGAAATTTGAGGAGTTTGGCCCCTTAGCAAACTTCTTATTTTATCCCCCAAAGAATTTTGCCTTGGTTGAGTACGGGAACATAATGCATGCTGTTCATGCATATGGATGTATGCAGGGTTCCTCTGTTTGGGGTGGTGGTCTCCAAATAAGGTATTTAGATAGACTTATAGGCAGCAAGGGATTTGCTAGTGGTATAGCTGTTGGTGAAAGTCGTCATATTTATGTTGCTAAAGTTAAGAACAAAAAAGATAAAGATGAGGTGTTTGATGAATTAAAGGCCGCAGGGTTGAAGAGGCCATGTAGCTTTACAGATATTTCCAGTGAAAATGCTTTGCTTCTTGAATTTGAGACAGCAACTGATGCAGCTGCTGCGAAAGCCCATATTAGGCGCCAGCTTCATCCAGATGTCTGTTCCCAGGACAAGAATACTTCTGGTCATGAACTTTTTGTGCGGAACATAGACAATTCAGTCCCTGACATGGAGTTTATCAATGCATTTTCACGATTTGGTGAGGTCATAAGGTGGCAGTTCAATAAGCTTGATGGGAACTGCTTGATAGATTATAGATCACCTAATGCTGCTGCCACTGCAAAATCTCACCTGCATGGTGCAAGATTTGGGCTGAAGTCAATTAGTGTTGAATCGAGATCTGTGCATGATAAAACTTTGTCGCCTTCTGTTCCAATGCTAGCCCCGAGTGTTTCTGACAGCAGTCACCATGAGATCAGGAATCCAAGGGTTTCAGGGTATAATGCAGGCTTCACAGTACCAACAGAGCGACCAATTTATGGTCCATCGGCTCCCAGAGCTCCACAAGGCATCCTTCCATGCCCACCTGTTTCTGCACACCGTGGTCCTGTAATACCACCGCCACCTATTCAAACTTCTTTTGTCCGTCCTGTATATCCTGGTCCAGGAAGTCCGTGGGAAAATACTACCCCAAATCCATCCTTCAGTCACGCTTCTCCTCGAATGATGCCTGGAAGTAGCTTCCGTATGAATCCACCTGCTCCTCTTCCTTTTATACCATCTTCTGTTACCCCTCTTACACAGTTTCCTGGAGGTTCAGCACAGCAGTCTGAGAAAAGGCCACCTCCACCTCCACCTCCACCAAATGTAGCCCCCCCACCATTTACTCGTCAAGATATACCACCCCCACCACCATCTCCACCACCACTACCTATTACTCAGCCACCTTCTGTGCCACCACCCCCAAATTCCCCTCCTCCGCTTCAACCTGCTACTGACCCTTCTGACTCACAAAAGCAACGTTCTCATCCTCGATGGCAGGGCTCTCTTTCAAAAAGTGGTTTACATTACTGTTCAATCTATGCAAGTAGAATAGAGTTGGATGCTTGTAGATATGAACATGCAGTTTCTGAACCGACAGGGTGGCCTTCAAGATTAGATGTGACAAAGCGAACGGATTACCAACATGTGAAGACAACTTTCTCCAATACTCCACCTAGCAAAAGAGAGGTCTGTCGGCTATTACCCTGTTCGAATGGTGATCAGAAAGGGTTCCGGGATTTTATATCCTATCTGAAACAGAGAGAATGCGCCGGTGTGATCAAGATTCCATCTGTCAAGCCATTGTGGTCAAGGCTACTATTTATCCTTCCTCCCACGCCTGAGGCCTGTGGGATGCTAGAACTTCCGCCCCATCCGACCGAATGCCTAATTGCACTGATTTTGCCAAAGGAGACGACTGCTGAAGCGACCTAACATGATTGTCGCGTAGACACATTCCGTAACCTCGTTGCTTCCAGTTTCGTGCACAGTAAACAATTTTGCATGAATGATACTAAGTTCCTACAGCTGCTTATGAATAATATGCTTCCAGTTTCGTGCACAGTTAACAAATTTTCATGTTTTCTTTTGACGAGACACCAATACTGTACTTATTCCTTTTGCTGCATAACTGATATATAGTTGCTACAATATCACAGAATTGACCGGTGATCCGGAATTTTTACACGCAAAGATCACTACAGGGACATGATCTGACGAACCGCTCCGTGTTCTCTTCGCTGCTTACTTCACCACATCGGAATCTAGGTCGAGGACGAAGGATTGGTGACTTGCCCGGCGAAGACCACCACGCCGGTGAGGCCCTCCTTGATCAGGAACATGAAGGGGTGGTCGGCGACGAAGTCCACGACGTGAACCGGCGCCGATGGCGCCGCGCAGCCAAGGGTCATGACGACGGCGGTCGCCGCCGCCGCCTCGGTGCCTTCCTCGTTCACCTCGACGAAGGACTCGTGGTAGACGGCCGACACGACGATCTTCTCCGCCTCCGGCGATGACTCCACCATCTCCGACAGGTCGGCGCCGGGGTACTCGAACGGCAGGCGCAGCCCGAGCTGTCGCAGCGTCTCCGCCGCGTTCGTCTTGTACGACAGGGTGAACCTCGGCACCATGAAGGCGCCCACGGGGACCTTCTCCGTCAGGGCGGCGGAGCTCTCGATCAGCGCCGCCGGGTCGGAGCACAGCTTGCGCAGCATGTCAGGCAGGCCGTGGCGCTCGTCGGGGAGGTAGATGTACATCGAGAAGAGGCGGCCGGTGTCGCGGCCGCGGCCGCGGCCGCCGCGCGCGTACGGGAGCCTGAGGACCTTGTAGCCGGCGCGGCAGGCGATGTACTGCCACTTGCCGCTCGACATGAACGGCGCGGAGACATGGCCGCCGTCGGGGAGGTAGAAGACGTCGTCGCTCGTGGACCGGGCGTCGAACTTGCTTTTCCAGTCGCCCTTGAAGTAGAGCGCGTTGCCGAGGACGGCCGGCGTCGCGCGGTCCACGGCATCTTTGGGCAGGAAGTCCTTGATCCGGCCGGCCGTCGCGCTCTCGAACCACTCGTTGATCTCTCGCCTCGCTTCCTCTAGCTTGTCTCGGAAGGACACCGGGCGCGCCTCCGCGCGGTACTTGTCGGCGACGACGCGCGCGTACGCGGCCTTGAGGCGGAGCGCGGCGTCGACCCAGACGCCGTTGGCGAACCGCACCTTGGGCCCGCCGCGGTCATCGCCGGGGCCGCTGTCGTCGGCGAGGGAGCACAGCGCGACGTGGGACGCGAGCGCCGCGTGGGCGGGGCCACCCGCGGGGCCGAGGAAGGCGATGATCTGGTCGAGCGTTTCGCCGCGGGCCCCCGCGCCGAGGAGCGCCAGCGCCGCGTGGAGCGAGAGCGGGGAGACGGCCAGGTTTTTGTCGCCGCCGCCGCCGCGTGGGGCGCGCGCGAGGTGGCCGAGCAGGCGCATGGCCATGGCTGTCTCGTCCCGGACGGCCTCCGCG]

[+] EMBL AK101759             [GTTTCAAAGGAACTTTGGATTGGTTCACTGGGAAATAGTGCTGCAGAGTCACTAGTTAGATCGAAATTTGAGGAGTTTGGCCCCTTAGCAAACTTCTTATTTTATCCCCCAAAGAATTTTGCCTTGGTTGAGTACGGGAACATAATGCATGCTGTTCATGCATATGGATGTATGCAGGGTTCCTCTGTTTGGGGTGGTGGTCTCCAAATAAGGTATTTAGATAGACTTATAGGCAGCAAGGGATTTGCTAGTGGTATAGCTGTTGGTGAAAGTCGTCATATTTATGTTGCTAAAGTTAAGAACAAAAAAGATAAAGATGAGGTGTTTGATGAATTAAAGGCCGCAGGGTTGAAGAGGCCATGTAGCTTTACAGATATTTCCAGTGAAAATGCTTTGCTTCTTGAATTTGAGACAGCAACTGATGCAGCTGCTGCGAAAGCCCATATTAGGCGCCAGCTTCATCCAGATGTCTGTTCCCAGGACAAGAATACTTCTGGTCATGAACTTTTTGTGCGGAACATAGACAATTCAGTCCCTGACATGGAGTTTATCAATGCATTTTCACGATTTGGTGAGGTCATAAGGTGGCAGTTCAATAAGCTTGATGGGAACTGCTTGATAGATTATAGATCACCTAATGCTGCTGCCACTGCAAAATCTCACCTGCATGGTGCAAGATTTGGGCTGAAGTCAATTAGTGTTGAATCGAGATCTGTGCATGATAAAACTTTGTCGCCTTCTGTTCCAATGCTAGCCCCGAGTGTTTCTGACAGCAGTCACCATGAGATCAGGAATCCAAGGGTTTCAGGGTATAATGCAGGCTTCACAGTACCAACAGAGCGACCAATTTATGGTCCATCGGCTCCCAGAGCTCCACAAGGCATCCTTCCATGCCCACCTGTTTCTGCACACCGTGGTCCTGTAATACCACCGCCACCTATTCAAACTTCTTTTGTCCGTCCTGTATATCCTGGTCCAGGAAGTCCGTGGGAAAATACTACCCCAAATCCATCCTTCAGTCACGCTTCTCCTCGAATGATGCCTGGAAGTAGCTTCCGTATGAATCCACCTGCTCCTCTTCCTTTTATACCATCTTCTGTTACCCCTCTTACACAGTTTCCTGGAGGTTCAGCACAGCAGTCTGAGAAAAGGCCACCTCCACCTCCACCTCCACCAAATGTAGCCCCCCCACCATTTACTCGTCAAGATATACCACCCCCACCACCATCTCCACCACCACTACCTATTACTCAGCCACCTTCTGTGCCACCACCCCCAAATTCCCCTCCTCCGCTTCAACCTGCTACTGACCCTTCTGACTCACAAAAGCAACGTTCTCATCCTCGATGGCAGGGCTCTCTTTCAAAAAGTGGTTTACATTACTGTTCAATCTATGCAAGTAGAATAGAGTTGGATGCTTGTAGATATGAACATGCAGTTTCTGAACCGACAGGGTGGCCTTCAAGATTAGATGTGACAAAGCGAACGGATTACCAACATGTGAAGACAACTTTCTCCAATACTCCACCTAGCAAAAGAGAGGTCTGTCGGCTATTACCCTGTTCGAATGGTGATCAGAAAGGGTTCCGGGATTTTATATCCTATCTGAAACAGAGAGAATGCGCCGGTGTGATCAAGATTCCATCTGTCAAGCCATTGTGGTCAAGGCTACTATTTATCCTTCCTCCCACGCCTGAGGCCTGTGGGATGCTAGAACTTCCGCCCCATCCGACCGAATGCCTAATTGCACTGATTTTGCCAAAGGAGACGACTGCTGAAGCGACCTAACATGATTGTCGCGTAGACACATTCCGTAACCTCGTTGCTTCCAGTTTCGTGCACAGTAAACAATTTTGCATGAATGATACTAAGTTCCTACAGCTGCTTATGAATAATATGCTTCCAGTTTCGTGCACAGTTAACAAATTTTCATGTTTTCTTTTGACGAGACACCAATACTGTACTTATTCCTTTTGCTGCATAACTGATATATAGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL C25903               [                  ATTGGTTCACTGGGAAATAGTGCTGCAGAGTCACTAGTTAGATCGAAATTTGAGGAGTTTGGCCCCTTAGCAAACTTCTTATTTTATCCCCCAAAGAATTTTGCCTTGGTTGAGTACGGGAACATAATGCATGCTGTTCATNCATATGGATGTATGCAGGGTTCCTCTGTTTGGGGTGGTGGTCTCCAAATAAGGTATTTAGATAGACTTATAGGCAGCAAGGGATTTGCTAGTGGTATAGCTGTTGGTGAAAGTCGTCATATTTATGTTGCTAAAGTTAAGAACANAAAAGATAAAGATGAGGTGTTTGATGAATTAAAGGCCGCAGGTTTGAAGAGGCCATGTAGCTTTACAGATATTTCCAGTGAAAATGCTTTGCTTCTTGAATTTGAGACAGCAACTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AK106246             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TACTAAGTTCCTACAGCTGCTTATGAATAATATGCTTCCAGTTTCGTGCACAGTTAACAAATTTTCATGTTTTCTTTTGACGAGACACCAATACTGTACTTATTCCTTTTGCTGCATAACTGATATATAGTTGCTACAATATCACAGAATTGACCGGTGATCCGGAATTTTTACACGCAAAGATCACTACAGGGACATGATCTGACGAACCGCTCCGTGTTCTCTTCGCTGCTTACTTCACCACATCGGAATCTAGGTCGAGGACGAAGGATTGGTGACTTGCCCGGCGAAGACCACCACGCCGGTGAGGCCCTCCTTGATCAGGAACATGAAGGGGTGGTCGGCGACGAAGTCCACGACGTGAACCGGCGCCGATGGCGCCGCGCAGCCAAGGGTCATGACGACGGCGGTCGCCGCCGCCGCCTCGGTGCCTTCCTCGTTCACCTCGACGAAGGACTCGTGGTAGACGGCCGACACGACGATCTTCTCCGCCTCCGGCGATGACTCCACCATCTCCGACAGGTCGGCGCCGGGGTACTCGAACGGCAGGCGCAGCCCGAGCTGTCGCAGCGTCTCCGCCGCGTTCGTCTTGTACGACAGGGTGAACCTCGGCACCATGAAGGCGCCCACGGGGACCTTCTCCGTCAGGGCGGCGGAGCTCTCGATCAGCGCCGCCGGGTCGGAGCACAGCTTGCGCAGCATGTCAGGCAGGCCGTGGCGCTCGTCGGGGAGGTAGATGTACATCGAGAAGAGGCGGCCGGTGTCGCGGCCGCGGCCGCGGCCGCCGCGCGCGTACGGGAGCCTGAGGACCTTGTAGCCGGCGCGGCAGGCGATGTACTGCCACTTGCCGCTCGACATGAACGGCGCGGAGACATGGCCGCCGTCGGGGAGGTAGAAGACGTCGTCGCTCGTGGACCGGGCGTCGAACTTGCTTTTCCAGTCGCCCTTGAAGTAGAGCGCGTTGCCGAGGACGGCCGGCGTCGCGCGGTCCACGGCATCTTTGGGCAGGAAGTCCTTGATCCGGCCGGCCGTCGCGCTCTCGAACCACTCGTTGATCTCTCGCCTCGCTTCCTCTAGCTTGTCTCGGAAGGACACCGGGCGCGCCTCCGCGCGGTACTTGTCGGCGACGACGCGCGCGTACGCGGCCTTGAGGCGGAGCGCGGCGTCGACCCAGACGCCGTTGGCGAACCGCACCTTGGGCCCGCCGCGGTCATCGCCGGGGCCGCTGTCGTCGGCGAGGGAGCACAGCGCGACGTGGGACGCGAGCGCCGCGTGGGCGGGGCCACCCGCGGGGCCGAGGAAGGCGATGATCTGGTCGAGCGTTTCGCCGCGGGCCCCCGCGCCGAGGAGCGCCAGCGCCGCGTGGAGCGAGAGCGGGGAGACGGCCAGGTTTTTGTCGCCGCCGCCGCCGCGTGGGGCGCGCGCGAGGTGGCCGAGCAGGCGCATGGCCATGGCTGTCTCGTCCCGGACGGCCTCCGCG]




>consensus_8296#0
GTTTCAAAGGAACTTTGGATTGGTTCACTGGGAAATAGTGCTGCAGAGTCACTAGTTAGA
TCGAAATTTGAGGAGTTTGGCCCCTTAGCAAACTTCTTATTTTATCCCCCAAAGAATTTT
GCCTTGGTTGAGTACGGGAACATAATGCATGCTGTTCATGCATATGGATGTATGCAGGGT
TCCTCTGTTTGGGGTGGTGGTCTCCAAATAAGGTATTTAGATAGACTTATAGGCAGCAAG
GGATTTGCTAGTGGTATAGCTGTTGGTGAAAGTCGTCATATTTATGTTGCTAAAGTTAAG
AACAAAAAAGATAAAGATGAGGTGTTTGATGAATTAAAGGCCGCAGGGTTGAAGAGGCCA
TGTAGCTTTACAGATATTTCCAGTGAAAATGCTTTGCTTCTTGAATTTGAGACAGCAACT
GATGCAGCTGCTGCGAAAGCCCATATTAGGCGCCAGCTTCATCCAGATGTCTGTTCCCAG
GACAAGAATACTTCTGGTCATGAACTTTTTGTGCGGAACATAGACAATTCAGTCCCTGAC
ATGGAGTTTATCAATGCATTTTCACGATTTGGTGAGGTCATAAGGTGGCAGTTCAATAAG
CTTGATGGGAACTGCTTGATAGATTATAGATCACCTAATGCTGCTGCCACTGCAAAATCT
CACCTGCATGGTGCAAGATTTGGGCTGAAGTCAATTAGTGTTGAATCGAGATCTGTGCAT
GATAAAACTTTGTCGCCTTCTGTTCCAATGCTAGCCCCGAGTGTTTCTGACAGCAGTCAC
CATGAGATCAGGAATCCAAGGGTTTCAGGGTATAATGCAGGCTTCACAGTACCAACAGAG
CGACCAATTTATGGTCCATCGGCTCCCAGAGCTCCACAAGGCATCCTTCCATGCCCACCT
GTTTCTGCACACCGTGGTCCTGTAATACCACCGCCACCTATTCAAACTTCTTTTGTCCGT
CCTGTATATCCTGGTCCAGGAAGTCCGTGGGAAAATACTACCCCAAATCCATCCTTCAGT
CACGCTTCTCCTCGAATGATGCCTGGAAGTAGCTTCCGTATGAATCCACCTGCTCCTCTT
CCTTTTATACCATCTTCTGTTACCCCTCTTACACAGTTTCCTGGAGGTTCAGCACAGCAG
TCTGAGAAAAGGCCACCTCCACCTCCACCTCCACCAAATGTAGCCCCCCCACCATTTACT
CGTCAAGATATACCACCCCCACCACCATCTCCACCACCACTACCTATTACTCAGCCACCT
TCTGTGCCACCACCCCCAAATTCCCCTCCTCCGCTTCAACCTGCTACTGACCCTTCTGAC
TCACAAAAGCAACGTTCTCATCCTCGATGGCAGGGCTCTCTTTCAAAAAGTGGTTTACAT
TACTGTTCAATCTATGCAAGTAGAATAGAGTTGGATGCTTGTAGATATGAACATGCAGTT
TCTGAACCGACAGGGTGGCCTTCAAGATTAGATGTGACAAAGCGAACGGATTACCAACAT
GTGAAGACAACTTTCTCCAATACTCCACCTAGCAAAAGAGAGGTCTGTCGGCTATTACCC
TGTTCGAATGGTGATCAGAAAGGGTTCCGGGATTTTATATCCTATCTGAAACAGAGAGAA
TGCGCCGGTGTGATCAAGATTCCATCTGTCAAGCCATTGTGGTCAAGGCTACTATTTATC
CTTCCTCCCACGCCTGAGGCCTGTGGGATGCTAGAACTTCCGCCCCATCCGACCGAATGC
CTAATTGCACTGATTTTGCCAAAGGAGACGACTGCTGAAGCGACCTAACATGATTGTCGC
GTAGACACATTCCGTAACCTCGTTGCTTCCAGTTTCGTGCACAGTAAACAATTTTGCATG
AATGATACTAAGTTCCTACAGCTGCTTATGAATAATATGCTTCCAGTTTCGTGCACAGTT
AACAAATTTTCATGTTTTCTTTTGACGAGACACCAATACTGTACTTATTCCTTTTGCTGC
ATAACTGATATATAGTTGCTACAATATCACAGAATTGACCGGTGATCCGGAATTTTTACA
CGCAAAGATCACTACAGGGACATGATCTGACGAACCGCTCCGTGTTCTCTTCGCTGCTTA
CTTCACCACATCGGAATCTAGGTCGAGGACGAAGGATTGGTGACTTGCCCGGCGAAGACC
ACCACGCCGGTGAGGCCCTCCTTGATCAGGAACATGAAGGGGTGGTCGGCGACGAAGTCC
ACGACGTGAACCGGCGCCGATGGCGCCGCGCAGCCAAGGGTCATGACGACGGCGGTCGCC
GCCGCCGCCTCGGTGCCTTCCTCGTTCACCTCGACGAAGGACTCGTGGTAGACGGCCGAC
ACGACGATCTTCTCCGCCTCCGGCGATGACTCCACCATCTCCGACAGGTCGGCGCCGGGG
TACTCGAACGGCAGGCGCAGCCCGAGCTGTCGCAGCGTCTCCGCCGCGTTCGTCTTGTAC
GACAGGGTGAACCTCGGCACCATGAAGGCGCCCACGGGGACCTTCTCCGTCAGGGCGGCG
GAGCTCTCGATCAGCGCCGCCGGGTCGGAGCACAGCTTGCGCAGCATGTCAGGCAGGCCG
TGGCGCTCGTCGGGGAGGTAGATGTACATCGAGAAGAGGCGGCCGGTGTCGCGGCCGCGG
CCGCGGCCGCCGCGCGCGTACGGGAGCCTGAGGACCTTGTAGCCGGCGCGGCAGGCGATG
TACTGCCACTTGCCGCTCGACATGAACGGCGCGGAGACATGGCCGCCGTCGGGGAGGTAG
AAGACGTCGTCGCTCGTGGACCGGGCGTCGAACTTGCTTTTCCAGTCGCCCTTGAAGTAG
AGCGCGTTGCCGAGGACGGCCGGCGTCGCGCGGTCCACGGCATCTTTGGGCAGGAAGTCC
TTGATCCGGCCGGCCGTCGCGCTCTCGAACCACTCGTTGATCTCTCGCCTCGCTTCCTCT
AGCTTGTCTCGGAAGGACACCGGGCGCGCCTCCGCGCGGTACTTGTCGGCGACGACGCGC
GCGTACGCGGCCTTGAGGCGGAGCGCGGCGTCGACCCAGACGCCGTTGGCGAACCGCACC
TTGGGCCCGCCGCGGTCATCGCCGGGGCCGCTGTCGTCGGCGAGGGAGCACAGCGCGACG
TGGGACGCGAGCGCCGCGTGGGCGGGGCCACCCGCGGGGCCGAGGAAGGCGATGATCTGG
TCGAGCGTTTCGCCGCGGGCCCCCGCGCCGAGGAGCGCCAGCGCCGCGTGGAGCGAGAGC
GGGGAGACGGCCAGGTTTTTGTCGCCGCCGCCGCCGCGTGGGGCGCGCGCGAGGTGGCCG
AGCAGGCGCATGGCCATGGCTGTCTCGTCCCGGACGGCCTCCGCG

consensusID : consensus_8296#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1144
fasta sequence 
                              [TTGACCAAGATTTCATAATGGACTAAGGTTAAATCATTGTTTTCACTTAACACCATACATCTTACATAAGTTTTCAGTTTGGACTAGGGGTGAGCAAAGCAAGGGAATGTGAGAAAACTTCATATGATTTACACATGGATAATTATAAAAGGCAAAACATTTTATGTTTTCTTCCTTATTTTTAGTGTGAGTGGTAATTAACTCTTTTCTAGTATTTTATTTTTATTCATTTGCCCCTATGTATATATCATTTTGTGCCACTTTTAAACATGTTTGCATCATTATTTTAGTGTGATTTGCTGAACAAAGTTGTTTTGTGATTTTCTATTTCTTTCTAAAGATATTTATCTTAATACTATGGAACTAAAAATGATGATTTGAACTAGCTTTTCTCTGACAACTTCCATTGATTTGCTCAACCCTAGTCCAAAGTGCCAACTAGTGCAAAGATATGTGGTGCTAAGTGAAAAGGTTGGGTTGGCCCTTGCCCATTGTGAAACTTTGGTCAAAACATATGGTGCAGTGTGAAATTTACTCATATATTAATGATGGGGCTGATGTATTTCAGTGTGGTGCAGAGAGAAAATCTCGAGCTACTTTTATCTATCGCATCTCGCAGGGGAATAATGTTTACTGTTTGTTATTTCACTTTGCAGAGAGAGGTCTGTCGGCTATTACCCTGTTCGAATGGTGATCAGAAAGGGTTCCGGGATTTTATATCCTATCTGAAACAGAGAGAATGCGCCGGTGTGATCAAGATTCCATCTGTCAAGCCATTGTGGTCAAGGCTACTATTTATCCTTCCTCCCACGCCTGAGGCCTGTGGGATGCTAGAACTTCCGCCCCATCCGACCGAATGCCTAATTGCACTGATTTTGCCAAAGGAGACGACTGCTGAAGCGACCTAACATGATTGTCGCGTAGACACATTCCGTAACCTCGTTGCTTCCAGTTTCGTGCACAGTAAACAATTTTGCATGAATGATACTAAGTTCCTACAGCTGCTTATGAATAATATGCTTCCAGTTTCGTGCACAGTTAACAAATTTTCATGTTTTCTTTTGACGAGACACCAATACTGTACTTATTCCTTTTGCTGCATAACTGATATATAGTTGCTACAATATCACAGAAAAAAAAAAGA]

[+] EMBL CB674161             [TTGACCAAGATTTCATAATGGACTAAGGTTAAATCATTGTTTTCACTTAACACCATACATCTTACATAAGTTTTCAGTTTGGACTAGGGGTGAGCAAAGCAAGGGAATGTGAGAAAACTTCATATGATTTACACATGGATAATTATAAAAGGCAAAACATTTTATGTTTTCTTCCTTATTTTTAGTGTGAGTGGTAATTAACTCTTTTCTAGTATTTTATTTTTATTCATTTGCCCCTATGTATATATCATTTTGTGCCACTTTTAAACATGTTTGCATCATTATTTTAGTGTGATTTGCTGAACAAAGTTGTTTTGTGATTTTCTATTTCTTTCTAAAGATATTTATCTTAATACTATGGAACTAAAAATGATGATTTGAACTAGCTTTTCTCTGACAACTTCCATTGATTTGCTCAACCCTAGTCCAAAGTGCCAACTAGTGCAAAGATATGTGGTGCTAAGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB674162             [                                                                                                                                                                                                                                                                                                                                                                                     TGATTTGAACTAGCTTTTCTCTGACAACTTCCATTGATTTGCTCAACCCTAGTCCAAAGTGCCAACTAGTGCAAAGATATGTGGTGCTAAGTGAAAAGGTTGGGTTGGCCCTTGCCCATTGTGAAACTTTGGTCAAAACATATGGTGCAGTGTGAAATTTACTCATATATTAATGATGGGGCTGATGTATTTCAGTGTGGTGCAGAGAGAAAATCTCGAGCTACTTTTATCTATCGCATCTCGCAGGGGAATAATGTTTACTGTTTGTTATTTCACTTTGCAGAGAGAGGTCTGTCGGCTATTACCCTGTTCGAATGGTGATCAGAAAGGGTTCCGGGATTTTATATCCTATCTGAAACAGAGAGAATGCGCCGGTGTGATCAAGATTCCATCTGTCAAGCCATTGTGGTCAAGGCTACTATTTATCCTTCCTCCCACGCCTGAGGCCTGTGGGATGCTAGAACTTCCGCCCCATCCGACCGAATGCCTAATTGCACTGATTTTGCCAAAGGAGACGACTGCTGAAGCGACCTAACATGATTGTCGCGTAGACACATTCCGTAACCTCGTTGCTTCCAGTTTCGTGCACAGTAAACAATTTTGCATGAATGATACTAAGTTCCTACAGCTGCTTATGAATAATATGCTTCCAGTTTCGTGCACAGTTAACAAATTTTCATGTTTTCTTTTGACGAGACACCAATACTGTACTTATTCCTTTTGCTGCATAACTGATATATAGTTGCTACAATATCACAGAAAAAAAAAAGA]




>consensus_8296#1
TTGACCAAGATTTCATAATGGACTAAGGTTAAATCATTGTTTTCACTTAACACCATACAT
CTTACATAAGTTTTCAGTTTGGACTAGGGGTGAGCAAAGCAAGGGAATGTGAGAAAACTT
CATATGATTTACACATGGATAATTATAAAAGGCAAAACATTTTATGTTTTCTTCCTTATT
TTTAGTGTGAGTGGTAATTAACTCTTTTCTAGTATTTTATTTTTATTCATTTGCCCCTAT
GTATATATCATTTTGTGCCACTTTTAAACATGTTTGCATCATTATTTTAGTGTGATTTGC
TGAACAAAGTTGTTTTGTGATTTTCTATTTCTTTCTAAAGATATTTATCTTAATACTATG
GAACTAAAAATGATGATTTGAACTAGCTTTTCTCTGACAACTTCCATTGATTTGCTCAAC
CCTAGTCCAAAGTGCCAACTAGTGCAAAGATATGTGGTGCTAAGTGAAAAGGTTGGGTTG
GCCCTTGCCCATTGTGAAACTTTGGTCAAAACATATGGTGCAGTGTGAAATTTACTCATA
TATTAATGATGGGGCTGATGTATTTCAGTGTGGTGCAGAGAGAAAATCTCGAGCTACTTT
TATCTATCGCATCTCGCAGGGGAATAATGTTTACTGTTTGTTATTTCACTTTGCAGAGAG
AGGTCTGTCGGCTATTACCCTGTTCGAATGGTGATCAGAAAGGGTTCCGGGATTTTATAT
CCTATCTGAAACAGAGAGAATGCGCCGGTGTGATCAAGATTCCATCTGTCAAGCCATTGT
GGTCAAGGCTACTATTTATCCTTCCTCCCACGCCTGAGGCCTGTGGGATGCTAGAACTTC
CGCCCCATCCGACCGAATGCCTAATTGCACTGATTTTGCCAAAGGAGACGACTGCTGAAG
CGACCTAACATGATTGTCGCGTAGACACATTCCGTAACCTCGTTGCTTCCAGTTTCGTGC
ACAGTAAACAATTTTGCATGAATGATACTAAGTTCCTACAGCTGCTTATGAATAATATGC
TTCCAGTTTCGTGCACAGTTAACAAATTTTCATGTTTTCTTTTGACGAGACACCAATACT
GTACTTATTCCTTTTGCTGCATAACTGATATATAGTTGCTACAATATCACAGAAAAAAAA
AAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8296#0      GTTTCAAAGGAACTTTGGATTGGTTCACTGGGAAATAGTGCTGCAGAGTCACTAGTTAGA 60
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      TCGAAATTTGAGGAGTTTGGCCCCTTAGCAAACTTCTTATTTTATCCCCCAAAGAATTTT 120
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GCCTTGGTTGAGTACGGGAACATAATGCATGCTGTTCATGCATATGGATGTATGCAGGGT 180
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      TCCTCTGTTTGGGGTGGTGGTCTCCAAATAAGGTATTTAGATAGACTTATAGGCAGCAAG 240
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GGATTTGCTAGTGGTATAGCTGTTGGTGAAAGTCGTCATATTTATGTTGCTAAAGTTAAG 300
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      AACAAAAAAGATAAAGATGAGGTGTTTGATGAATTAAAGGCCGCAGGGTTGAAGAGGCCA 360
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      TGTAGCTTTACAGATATTTCCAGTGAAAATGCTTTGCTTCTTGAATTTGAGACAGCAACT 420
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GATGCAGCTGCTGCGAAAGCCCATATTAGGCGCCAGCTTCATCCAGATGTCTGTTCCCAG 480
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GACAAGAATACTTCTGGTCATGAACTTTTTGTGCGGAACATAGACAATTCAGTCCCTGAC 540
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      ATGGAGTTTATCAATGCATTTTCACGATTTGGTGAGGTCATAAGGTGGCAGTTCAATAAG 600
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      CTTGATGGGAACTGCTTGATAGATTATAGATCACCTAATGCTGCTGCCACTGCAAAATCT 660
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      CACCTGCATGGTGCAAGATTTGGGCTGAAGTCAATTAGTGTTGAATCGAGATCTGTGCAT 720
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GATAAAACTTTGTCGCCTTCTGTTCCAATGCTAGCCCCGAGTGTTTCTGACAGCAGTCAC 780
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      CATGAGATCAGGAATCCAAGGGTTTCAGGGTATAATGCAGGCTTCACAGTACCAACAGAG 840
consensus_8296#1      -------------------------------TTGACCAAGATTTCATAATG--GACTAAG 27
                                                      * *   **  **** * *    **  **

consensus_8296#0      CGACCAATTTATGGTCCATCGGCTCCCAGAGCTCCACAAGGCATCCTTCCATGCCCACCT 900
consensus_8296#1      --GTTAAATCATTGTT------TTCACTTAACACCATA---CATCTTACATAAGTTTTCA 76
                           ** * ** **        ** *  * * *** *   **** * *         * 

consensus_8296#0      GTTTCTGCACACCGTGGTCCTGTAATACCACCGCCACCTATTCAAACTTCTTTTGTCCGT 960
consensus_8296#1      GTTT----GGACTAGGGGTGAGCAA-AGCAAGGGAATGTGAGAAAACTTCATATGATTTA 131
                      ****      **   **    * ** * **  *  *  *    ******* * **     

consensus_8296#0      CCTGTATATCCTGGTCCAGGAAGTCCGTGGGAAAATACTACCCCAAATCCATC--CTTCA 1018
consensus_8296#1      CACATGGAT---AATTATAAAAGGC----AAAACATTTTATGTTTTCTTCCTTATTTTTA 184
                      *   *  **     *     *** *      ** **  **       * * *    ** *

consensus_8296#0      GTCACGCTTCTCCTCGAATGATGCCTGGAAGTAGCTTCCGTATGAATCCACCTGCTCCTC 1078
consensus_8296#1      GTGTGAGTGGTAATTAACTCTTTTCTAGTA-----TTTTATTTTTATTCATTTGCCCCTA 239
                      **     *  *  *  * *  *  ** * *     **   * *  ** **  *** *** 

consensus_8296#0      TTCCTTTTATACCATCTTCTGTTACCCCTCTTACACAGTTTCCTGGAGGTTC-AGCACAG 1137
consensus_8296#1      TG---TATATATCATTTTGTGCCACTT-TTAAACATGTTTGCATCATTATTTTAGTGTGA 295
                      *    * **** *** ** **  **   *   ***   ** * *     **  **     

consensus_8296#0      CAGTCTGAGAAAAGGCCACCTCCA--CCTCCACCTCCACC-AAATGTAGCCCCCCCACCA 1194
consensus_8296#1      TTTGCTGAACAAAGTTGTTTTGTGATTTTCTATTTCTTTCTAAAGATATTTATCTTAATA 355
                          ****  ****      *       ** *  **   * ***  **     *  *  *

consensus_8296#0      TTTACTCGTCAAGATATACCACCCCCACCACCATCTCCACCACCACTACCTATTACTCAG 1254
consensus_8296#1      CTATGGAACTAAAAATGATGATTTGAACTAGCTTTTCTCTGACAACTTCCATTGATTTGC 415
                       *        ** *   *  *     ** * * * **    ** *** **  * * *   

consensus_8296#0      CCACCTTCTGTGCCACCACCCCCAAATTCCCCTCCTCCGCTTCAACCTGCTACTGACCCT 1314
consensus_8296#1      TCAACCCTAGT----------CCAAAGTGCCAACTAGTGCAAAGATATGTGG-------T 458
                       ** *    **          ***** * **  *    **    *  **          *

consensus_8296#0      TCTGACTCACAAAAGCAACGTTCTCATCCTCGATGGCAGGGCTCTCTTTCAAAAAGTGGT 1374
consensus_8296#1      GCTAAGTGAAAAGGTTGGGTTGGCCCTTGCCCATTGTGAAACT-TTGGTCAAAACATATG 517
                       ** * * * **        *   * *   * ** *     ** *   ******  *   

consensus_8296#0      TTACATTACTGTTCAATCTATGCAAGTAGAATAGAGTTGGATGCTTGTAGATATGAACAT 1434
consensus_8296#1      GTGCAGT---GTGAAATTTACTCA--TATATTAATGATGGG-GCTGATGTATTTCAGTGT 571
                       * ** *   **  *** **  **  ** * **  * ***  ***  *  ** * *   *

consensus_8296#0      GCAGTTTCTGAACCGACAGGGTGGCCTTCAAGATTAGATGTGACAAAGCGAACGGATTAC 1494
consensus_8296#1      GG---TGCAGAGAGAAAATCTCGAGCTAC----TTTTATCTATCGCATCTCGCAGGGGAA 624
                      *    * * **    * *    *  ** *    **  ** *  *  * *   * *   * 

consensus_8296#0      CAACATGTGAAGACAACTTTCTCCAATACTCCACCTAGCAAAAGAGAGGTCTGTCGGCTA 1554
consensus_8296#1      TAATGTTTA---------CTGTTTGTTATTTCACTTTGCAGA-GAGAGGTCTGTCGGCTA 674
                       **  * *           * *    ** * *** * *** * *****************

consensus_8296#0      TTACCCTGTTCGAATGGTGATCAGAAAGGGTTCCGGGATTTTATATCCTATCTGAAACAG 1614
consensus_8296#1      TTACCCTGTTCGAATGGTGATCAGAAAGGGTTCCGGGATTTTATATCCTATCTGAAACAG 734
                      ************************************************************

consensus_8296#0      AGAGAATGCGCCGGTGTGATCAAGATTCCATCTGTCAAGCCATTGTGGTCAAGGCTACTA 1674
consensus_8296#1      AGAGAATGCGCCGGTGTGATCAAGATTCCATCTGTCAAGCCATTGTGGTCAAGGCTACTA 794
                      ************************************************************

consensus_8296#0      TTTATCCTTCCTCCCACGCCTGAGGCCTGTGGGATGCTAGAACTTCCGCCCCATCCGACC 1734
consensus_8296#1      TTTATCCTTCCTCCCACGCCTGAGGCCTGTGGGATGCTAGAACTTCCGCCCCATCCGACC 854
                      ************************************************************

consensus_8296#0      GAATGCCTAATTGCACTGATTTTGCCAAAGGAGACGACTGCTGAAGCGACCTAACATGAT 1794
consensus_8296#1      GAATGCCTAATTGCACTGATTTTGCCAAAGGAGACGACTGCTGAAGCGACCTAACATGAT 914
                      ************************************************************

consensus_8296#0      TGTCGCGTAGACACATTCCGTAACCTCGTTGCTTCCAGTTTCGTGCACAGTAAACAATTT 1854
consensus_8296#1      TGTCGCGTAGACACATTCCGTAACCTCGTTGCTTCCAGTTTCGTGCACAGTAAACAATTT 974
                      ************************************************************

consensus_8296#0      TGCATGAATGATACTAAGTTCCTACAGCTGCTTATGAATAATATGCTTCCAGTTTCGTGC 1914
consensus_8296#1      TGCATGAATGATACTAAGTTCCTACAGCTGCTTATGAATAATATGCTTCCAGTTTCGTGC 1034
                      ************************************************************

consensus_8296#0      ACAGTTAACAAATTTTCATGTTTTCTTTTGACGAGACACCAATACTGTACTTATTCCTTT 1974
consensus_8296#1      ACAGTTAACAAATTTTCATGTTTTCTTTTGACGAGACACCAATACTGTACTTATTCCTTT 1094
                      ************************************************************

consensus_8296#0      TGCTGCATAACTGATATATAGTTGCTACAATATCACAGAATTGACCGGTGATCCGGAATT 2034
consensus_8296#1      TGCTGCATAACTGATATATAGTTGCTACAATATCACAGAAAAAAAAAAGA---------- 1144
                      ****************************************   *                

consensus_8296#0      TTTACACGCAAAGATCACTACAGGGACATGATCTGACGAACCGCTCCGTGTTCTCTTCGC 2094
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      TGCTTACTTCACCACATCGGAATCTAGGTCGAGGACGAAGGATTGGTGACTTGCCCGGCG 2154
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      AAGACCACCACGCCGGTGAGGCCCTCCTTGATCAGGAACATGAAGGGGTGGTCGGCGACG 2214
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      AAGTCCACGACGTGAACCGGCGCCGATGGCGCCGCGCAGCCAAGGGTCATGACGACGGCG 2274
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GTCGCCGCCGCCGCCTCGGTGCCTTCCTCGTTCACCTCGACGAAGGACTCGTGGTAGACG 2334
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GCCGACACGACGATCTTCTCCGCCTCCGGCGATGACTCCACCATCTCCGACAGGTCGGCG 2394
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      CCGGGGTACTCGAACGGCAGGCGCAGCCCGAGCTGTCGCAGCGTCTCCGCCGCGTTCGTC 2454
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      TTGTACGACAGGGTGAACCTCGGCACCATGAAGGCGCCCACGGGGACCTTCTCCGTCAGG 2514
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GCGGCGGAGCTCTCGATCAGCGCCGCCGGGTCGGAGCACAGCTTGCGCAGCATGTCAGGC 2574
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      AGGCCGTGGCGCTCGTCGGGGAGGTAGATGTACATCGAGAAGAGGCGGCCGGTGTCGCGG 2634
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      CCGCGGCCGCGGCCGCCGCGCGCGTACGGGAGCCTGAGGACCTTGTAGCCGGCGCGGCAG 2694
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GCGATGTACTGCCACTTGCCGCTCGACATGAACGGCGCGGAGACATGGCCGCCGTCGGGG 2754
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      AGGTAGAAGACGTCGTCGCTCGTGGACCGGGCGTCGAACTTGCTTTTCCAGTCGCCCTTG 2814
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      AAGTAGAGCGCGTTGCCGAGGACGGCCGGCGTCGCGCGGTCCACGGCATCTTTGGGCAGG 2874
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      AAGTCCTTGATCCGGCCGGCCGTCGCGCTCTCGAACCACTCGTTGATCTCTCGCCTCGCT 2934
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      TCCTCTAGCTTGTCTCGGAAGGACACCGGGCGCGCCTCCGCGCGGTACTTGTCGGCGACG 2994
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      ACGCGCGCGTACGCGGCCTTGAGGCGGAGCGCGGCGTCGACCCAGACGCCGTTGGCGAAC 3054
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      CGCACCTTGGGCCCGCCGCGGTCATCGCCGGGGCCGCTGTCGTCGGCGAGGGAGCACAGC 3114
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GCGACGTGGGACGCGAGCGCCGCGTGGGCGGGGCCACCCGCGGGGCCGAGGAAGGCGATG 3174
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      ATCTGGTCGAGCGTTTCGCCGCGGGCCCCCGCGCCGAGGAGCGCCAGCGCCGCGTGGAGC 3234
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      GAGAGCGGGGAGACGGCCAGGTTTTTGTCGCCGCCGCCGCCGCGTGGGGCGCGCGCGAGG 3294
consensus_8296#1      ------------------------------------------------------------
                                                                                  

consensus_8296#0      TGGCCGAGCAGGCGCATGGCCATGGCTGTCTCGTCCCGGACGGCCTCCGCG 3345
consensus_8296#1      ---------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)