cluster # 8298

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Oryza sativa
cluster # 8298 cluster # 8298 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8298#0 length = 1054 sequences # 4

consensus_8298#1 length = 569 sequences # 1

consensusID : consensus_8298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1054
fasta sequence

                              [GCGGGATCGCGGCGG-ACCTGAACCGGGGGTTTCCGGCGATCTTTCAGGGGGTGGGGGTGGAGGAGACGGCGGTGGAAGGGGATGGAGGAGCCCAGCCGGCGGCCGGGCTGCAGGAGTTCCAGTTCTTCGGCCACGACGACCACGACAGCGTCGCGTGGCTCTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCGCCAAACCGCGCCCATGGCGGTCGGCAACGGCGCGGCGGCGGCGCAGCAGCGGCAGGCGTTCGACGCGTACGCGCAGTACCAGCCGGGGCACGGGCTCACGTTCGACGTGCCGCTCACCCGAGGCGAGGCCGCCGCCGCGGTGCTCGAGGCCAGCCTCGGCCTCGGCGGCGCCGGCGCCGGCGGCAGGAACCCGGCGACGTCGAGCAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACGCCGTGAGCTCCATCCCGAAAGATCACGCGGCGGCGGCGGCGGTCGTTGCCAACGGCGGCCTGAGCGGCGGCGGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTGATGCGGTACAAGGAGAAGAGGAAGCGGAGGCGATACGAGAAGCAGATCCGGTACGCCTCGCGCAAGGCCTACGCCGAGATGCGGCCGCGCGTGAAGGGCCGCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCCGTCCTCCGCCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTCGTAGCTAGCAGCCTAGCACTATAATAGCAGATCATTATTTCTCTCTTTGTATACGTACTCTACGTACATAGGCCAAGCATGCATTGACTAGCTAGGCTATTGGTTGAAAAGTTTAAGGTTTAATTAAGGTAGATATATATGGCAACAAGTATATATATGTGATTTACTTGTCTTACTGAAGAACTAGCATGGTGACCCGCGCAGATTGCTCGGCTAGCATCATTATATTTTCTCTCATATAATAGCATATATGTTTTCTCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK109732             [GCGGGATCGCGGCGG ACCTGAACCGGGGGTTTCCGGCGATCTTTCAGGGGGTGGGGGTGGAGGAGACGGCGGTGGAAGGGGATGGAGGAGCCCAGCCGGCGGCCGGGCTGCAGGAGTTCCAGTTCTTCGGCCACGACGACCACGACAGCGTCGCGTGGCTCTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCGCCAAACCGCGCCCATGGCGGTCGGCAACGGCGCGGCGGCGGCGCAGCAGCGGCAGGCGTTCGACGCGTACGCGCAGTACCAGCCGGGGCACGGGCTCACGTTCGACGTGCCGCTCACCCGAGGCGAGGCCGCCGCCGCGGTGCTCGAGGCCAGCCTCGGCCTCGGCGGCGCCGGCGCCGGCGGCAGGAACCCGGCGACGTCGAGCAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACGCCGTGAGCTCCATCCCGAAAGATCACGCGGCGGCGGCGGCGGTCGTTGCCAACGGCGGCCTGAGCGGCGGCGGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTGATGCGGTACAAGGAGAAGAGGAAGCGGAGGCGATACGAGAAGCAGATCCGGTACGCCTCGCGCAAGGCCTACGCCGAGATGCGGCCGCGCGTGAAGGGCCGCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCCGTCCTCCGCCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTCGTAGCTAGCAGCCTAGCACTATAATAGCAGATCATTATTTCTCTCTTTGTATACGTACTCTACGTACATAGGCCAAGCATGCATTGACTAGCTAGGCTATTGGTTGAAAAGTTTAAGGTT                                                                                                                                                                  ]
[+] EMBL AU173953             [        GCGGCGGCACCTGAACCGGGGGTTTCCGGCGATCTTTCAGGGGGTGGGGGTGGAGGAGACGGCGGTGGAAGGGGATGGAGGAGCCCAGCCGGCGGCCGGGCTGCAGGAGTTCCAGTTCTTCGGCCACGACGACCACGACAGCGTCGCGTGGCTCTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCGCCAAACCGCGCCCATGGCGGTCGGCAACGGCGCGGCGGCGGCGCAGCAGCGGCAGGCGTTCGACGCGTACGCGCAGTACCAGCCGGGGCACGGGCTCACGTTCGACGTGCCGNTCACCCGAGGCGAGGCCGCCGCCGCGGTGCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU075686             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCCGCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCCGTCCTCCGCCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTCGTAGCTAGCAGCCTAGCACTATAATAGCAGATCATTATTTCTCTCTTTGTATACGTACTCTACGTACATAGGCCAAGCATGCATTGACTAGCTAGGCTATTGGTTGAAAAGTTTAAGGTTTAATTAAGGTAGATATATATGGCAACAAGTATATATATGTGATTTACTTGTCTTACTGAAGAACTAGCATGGTGACCCGCGCAGATTGCTCGGCTAGCATCATTATATTTTCTCTCATATAATAGCATATATGTTTTCTCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C99401               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGCCAAGCATGCATTNACTAGCTAGGCTATTGGNTNAAAAGTTTAAGGTTTAATTNAGGTAGATATATATGGNAACAAGTATATATATGTGATTTACTTGTCTTACTNAAGAACTAGCATGGTNACCCNCGCAGATTNCTCGGCTAGCATCATTATATTTTCTCTCATATAATAGCATATATGTTTTCTNAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8298#0
GCGGGATCGCGGCGGACCTGAACCGGGGGTTTCCGGCGATCTTTCAGGGGGTGGGGGTGG
AGGAGACGGCGGTGGAAGGGGATGGAGGAGCCCAGCCGGCGGCCGGGCTGCAGGAGTTCC
AGTTCTTCGGCCACGACGACCACGACAGCGTCGCGTGGCTCTTCAACGACCCGGCGCCGC
CCGGCGGGACGGACCACCAGCTTCACCGCCAAACCGCGCCCATGGCGGTCGGCAACGGCG
CGGCGGCGGCGCAGCAGCGGCAGGCGTTCGACGCGTACGCGCAGTACCAGCCGGGGCACG
GGCTCACGTTCGACGTGCCGCTCACCCGAGGCGAGGCCGCCGCCGCGGTGCTCGAGGCCA
GCCTCGGCCTCGGCGGCGCCGGCGCCGGCGGCAGGAACCCGGCGACGTCGAGCAGCACAA
TCATGTCCTTCTGTGGGAGCACGTTCACTGACGCCGTGAGCTCCATCCCGAAAGATCACG
CGGCGGCGGCGGCGGTCGTTGCCAACGGCGGCCTGAGCGGCGGCGGCGGCGACCCGGCGA
TGGACCGGGAGGCGAAGGTGATGCGGTACAAGGAGAAGAGGAAGCGGAGGCGATACGAGA
AGCAGATCCGGTACGCCTCGCGCAAGGCCTACGCCGAGATGCGGCCGCGCGTGAAGGGCC
GCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCCGTCCTCCG
CCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTCGTAGCTAG
CAGCCTAGCACTATAATAGCAGATCATTATTTCTCTCTTTGTATACGTACTCTACGTACA
TAGGCCAAGCATGCATTGACTAGCTAGGCTATTGGTTGAAAAGTTTAAGGTTTAATTAAG
GTAGATATATATGGCAACAAGTATATATATGTGATTTACTTGTCTTACTGAAGAACTAGC
ATGGTGACCCGCGCAGATTGCTCGGCTAGCATCATTATATTTTCTCTCATATAATAGCAT
ATATGTTTTCTCAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [GACCCCACCGCGCCGGCTCCAGGAGTTCCAGTTCGTTCGCCACGACGACCACGACAGCGTCGCGTGGCTCTTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCAGCCAAACCGCGCCCATGCAGGTCGGCAACGGCGCGGCGGCGGCAGCAGCAGCGGCAGGCGTTCGACGCGTACGCCAGTACCACGCCGGGGCACGGGCTCACGTTCGACAGTGCCGCATCACCACGAGGCGAGCCGCCCCGCGGTGCTCGAGGCCACGCCTCGGCCTCGGCGGCGCCGGCCCGGCGGCAGGAACCCGGCGACGTCGACAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACCCGTGAGCTCCATCCCGAAAGATCACGCGGCGCGCGCGTCGTTNCCAACGCGCCTGAGCGCGGCGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTGATCCGGTACAAGGAGAAGAGGAACCGAGCNATACGAGAACCAGATCCGTACCCTCGCCCAAGCTACCCGAGATCGCCCTTAGAGATCCAGCTACTACGCGCATCAC]

[-] EMBL BM422138             [GACCCCACCGCGCCGGCTCCAGGAGTTCCAGTTCGTTCGCCACGACGACCACGACAGCGTCGCGTGGCTCTTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCAGCCAAACCGCGCCCATGCAGGTCGGCAACGGCGCGGCGGCGGCAGCAGCAGCGGCAGGCGTTCGACGCGTACGCCAGTACCACGCCGGGGCACGGGCTCACGTTCGACAGTGCCGCATCACCACGAGGCGAGCCGCCCCGCGGTGCTCGAGGCCACGCCTCGGCCTCGGCGGCGCCGGCCCGGCGGCAGGAACCCGGCGACGTCGACAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACCCGTGAGCTCCATCCCGAAAGATCACGCGGCGCGCGCGTCGTTNCCAACGCGCCTGAGCGCGGCGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTGATCCGGTACAAGGAGAAGAGGAACCGAGCNATACGAGAACCAGATCCGTACCCTCGCCCAAGCTACCCGAGATCGCCCTTAGAGATCCAGCTACTACGCGCATCAC]




>consensus_8298#1
GACCCCACCGCGCCGGCTCCAGGAGTTCCAGTTCGTTCGCCACGACGACCACGACAGCGT
CGCGTGGCTCTTTCAACGACCCGGCGCCGCCCGGCGGGACGGACCACCAGCTTCACCAGC
CAAACCGCGCCCATGCAGGTCGGCAACGGCGCGGCGGCGGCAGCAGCAGCGGCAGGCGTT
CGACGCGTACGCCAGTACCACGCCGGGGCACGGGCTCACGTTCGACAGTGCCGCATCACC
ACGAGGCGAGCCGCCCCGCGGTGCTCGAGGCCACGCCTCGGCCTCGGCGGCGCCGGCCCG
GCGGCAGGAACCCGGCGACGTCGACAGCACAATCATGTCCTTCTGTGGGAGCACGTTCAC
TGACCCGTGAGCTCCATCCCGAAAGATCACGCGGCGCGCGCGTCGTTNCCAACGCGCCTG
AGCGCGGCGCGGCGACCCGGCGATGGACCGGGAGGCGAAGGTGATCCGGTACAAGGAGAA
GAGGAACCGAGCNATACGAGAACCAGATCCGTACCCTCGCCCAAGCTACCCGAGATCGCC
CTTAGAGATCCAGCTACTACGCGCATCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8298#0      GCGGGATCGCGGCGGACCTGAACCGGGGGTTTCCGGCGATCTTTCAGGGGGTGGGGGTGG 60
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      AGGAGACGGCGGTGGAAGGGGATGGAGGAGCCCAGCCGGCGGCCGGGCTGCAGGAGTTCC 120
consensus_8298#1      ---------------------------GACCCCACC--GCGCC--GGCTCCAGGAGTTCC 29
                                                 ** **** *  *** *  **** **********

consensus_8298#0      AGTTCTTCGGCCACGACGACCACGACAGCGTCGCGTGGCTCTT-CAACGACCCGGCGCCG 179
consensus_8298#1      AGTTCGTTCGCCACGACGACCACGACAGCGTCGCGTGGCTCTTTCAACGACCCGGCGCCG 89
                      ***** *  ********************************** ****************

consensus_8298#0      CCCGGCGGGACGGACCACCAGCTTCACC-GCCAAACCGCGCCCATGGCGGTCGGCAACGG 238
consensus_8298#1      CCCGGCGGGACGGACCACCAGCTTCACCAGCCAAACCGCGCCCATGCAGGTCGGCAACGG 149
                      **************************** *****************  ************

consensus_8298#0      CGCGGCGGCGGC-GCAGCAGCGGCAGGCGTTCGACGCGTACGCGCAGTACCA-GCCGGGG 296
consensus_8298#1      CGCGGCGGCGGCAGCAGCAGCGGCAGGCGTTCGACGCGTACGC-CAGTACCACGCCGGGG 208
                      ************ ****************************** ******** *******

consensus_8298#0      CACGGGCTCACGTTCGAC-GTGCCGC-TCACC-CGAGGCGAGGCCGCCGCCGCGGTGCTC 353
consensus_8298#1      CACGGGCTCACGTTCGACAGTGCCGCATCACCACGAGGCGAG-CCGCC-CCGCGGTGCTC 266
                      ****************** ******* ***** ********* ***** ***********

consensus_8298#0      GAGGCCA-GCCTCGGCCTCGGCGGCGCCGGCGCCGGCGGCAGGAACCCGGCGACGTCGAG 412
consensus_8298#1      GAGGCCACGCCTCGGCCTCGGCGGCGCCGGC-CCGGCGGCAGGAACCCGGCGACGTCGA- 324
                      ******* *********************** *************************** 

consensus_8298#0      CAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGACGCCGTGAGCTCCATCCCGAA 472
consensus_8298#1      CAGCACAATCATGTCCTTCTGTGGGAGCACGTTCACTGAC-CCGTGAGCTCCATCCCGAA 383
                      **************************************** *******************

consensus_8298#0      AGATCACGCGGCGGCGGCGGCGGTCGTTGCCAACGGCGGCCTGAGCGGCGGCGGCGGCGA 532
consensus_8298#1      AGATCACGCGGCG----CGCGCGTCGTTNCCAACGC--GCCTGAGCG-CGGCG-CGGCGA 435
                      *************    **   ****** ******   ********* ***** ******

consensus_8298#0      CCCGGCGATGGACCGGGAGGCGAAGGTGATGCGGTACAAGGAGAAGAGGAAGCGGAGGCG 592
consensus_8298#1      CCCGGCGATGGACCGGGAGGCGAAGGTGATCCGGTACAAGGAGAAGAGGAACCGA--GCN 493
                      ****************************** ******************** **   ** 

consensus_8298#0      ATACGAGAAGCAGATCCGGTACGCCTCGCGCAAGGCCTACGCCGAGATGCGGCCGCGCGT 652
consensus_8298#1      ATACGAGAACCAGATCCG-TAC-CCTCGCCCAAG--CTAC-CCGAGAT-----CGCCCTT 543
                      ********* ******** *** ****** ****  **** *******     *** * *

consensus_8298#0      GAAGGGCCGCTTCGCCAAGGTGCCCGACGGCGAGCTGGACGGCGCGACACCGCCGCCGCC 712
consensus_8298#1      AGAGATCCAGCT--ACTACGCGCATCAC-------------------------------- 569
                        **  **   *   * * * **   **                                

consensus_8298#0      GTCCTCCGCCGCCGGCGGCGGCTACGAGCCCGGCCGGCTCGACCTCGGATGGTTCCGTTC 772
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      GTAGCTAGCAGCCTAGCACTATAATAGCAGATCATTATTTCTCTCTTTGTATACGTACTC 832
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      TACGTACATAGGCCAAGCATGCATTGACTAGCTAGGCTATTGGTTGAAAAGTTTAAGGTT 892
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      TAATTAAGGTAGATATATATGGCAACAAGTATATATATGTGATTTACTTGTCTTACTGAA 952
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      GAACTAGCATGGTGACCCGCGCAGATTGCTCGGCTAGCATCATTATATTTTCTCTCATAT 1012
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      AATAGCATATATGTTTTCTCAAAAAAAAAAAAAAAAAAAAAA 1054
consensus_8298#1      ------------------------------------------