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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1023 fasta sequence
[CGGACCATCGTTGTCTCGTTCTCCTCTTCTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCGCCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGTCTCATCATGGTGGATCCATTCGCCAGCGAAGGGAGTCAGTATGACCCATCCAAGGATCCTGAACGGAAGTCTAAGTCAAAAGATCCGGGATGGAAATACTGCTTCTGGCCAGACTTGAGCAACAGAGATTTGATCCACTGCTCGCTTTGTGGCAAGCAAATGATTGCAGGATTCAAGAGAGTCAGCAACATCTTGCAACAGGATTTGGAGATGTGCAGTGCAGCGGTGCCCCAATACTACCACAGCTATCATGAAAGAGATGAGAGCATATCTGAAGAAGAATTCGAGAATTGGCAAATATCTCAACTTACACCCCTCCTCTTATCGGCCAATGCCAAGTTCTGAGACAGCTGCCAAAAGGAAACAAGCTCCTGACGCTCTTCAATTTGGACGACCAACCCCAAAACAAACAACATCTGTTGCTTCTATGCTTTGCAAGGCACCTGAAGAGGTTGACGAAGATATCCATGCCAAGGGGCCTTCTCAATCTACCATTGAGCAATGTACAAGGCAGTACAATGGAAAACAAATGGTCCATCAGCAAATAGCAAATTTGTTTTCTGAATTTGACATACCATTTGCTGCTGCGCACTCAAGGAGCTTTGAGACTATGGTTCAATCCATCATACAATTTGGACCTGGTTATAAGCCTCCTAGTCATCAGGATTGGTGGGTTCCGTTGCTTGTTGGGGCAAAGGAGACTACGTTGGGAGCCAGTGGTAATATGGGAGATTTGAATGAATCGGACGATGATATTTGGTAGTTAAGACCAGAATCATTTACCTATGATGTCATGCTAGTATACTATTATGCTGTTTATCTGTCTCGGAGAACGCTGATGCTTATGACCTATGTACTTTTGGTGGATGATTTTTGCTATATTTAT]
[+] EMBL AK108098 [CGGACCATCGTTGTCTCGTTCTCCTCTTCTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCGCCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGTCTCATCATGGTGGATCCATTCGCCAGCGAAGGGAGTCAGTATGACCCATCCAAGGATCCTGAACGGAAGTCTAAGTCAAAAGATCCGGGATGGAAATACTGCTTCTGGCCAGACTTGAGCAACAGAGATTTGATCCACTGCTCGCTTTGTGGCAAGCAAATGATTGCAGGATTCAAGAGAGTCAGCAACATCTTGCAACAGGATTTGGAGATGTGCAGTGCAGCGGTGCCCCAATACTACCACAGCTATCATGAAAGAGATGAGAGCATATCTGAAGAAGAATTCGAGAATTGGCAAATATCTCAACTTACACCCCTCCTCTTATCGGCCAATGCCAAGTTCTGAGACAGCTGCCAAAAGGAAACAAGCTCCTGACGCTCTTCAATTTGGACGACCAACCCCAAAACAAACAACATCTGTTGCTTCTATGCTTTGCAAGGCACCTGAAGAGGTTGACGAAGATATCCATGCCAAGGGGCCTTCTCAATCTACCATTGAGCAATGTACAAGGCAGTACAATGGAAAACAAATGGTCCATCAGCAAATAGCAAATTTGTTTTCTGAATTTGACATACCATTTGCTGCTGCGCACTCAAGGAGCTTTGAGACTATGGTTCAATCCATCATACAATTTGGACCTGGTTATAAGCCTCCTAGTCATCAGGATTGGTGGGTTCCGTTGCTTGTTGGGGCAAAGGAGACTACGTTGGGAGCCAGTGGTAATATGGGAGATTTGAATGAATCGGACGATGATATTTGGTAGTTAAGACCAGAATCATTTACCTATGATGTCATGCTAGTATACTATTATGCTGTTTATCTGTCTCGGAGAACGCTGATGCTTATGACCTATGTACTTTTGGTGGATGATTTTTGCTATATTTAT]
consensusID : consensus_8314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence
[CTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCGCCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGGTCAACGAAGAGATTGAAGAGAATATTCGAAAGACAAGGGAAATAGAGTCAGAAATAGTGAAGCATTCTGAAACTGAAAAGGAGTATATCATGAAAGAGCCTGAACTAATGAAAGGGGTATCAATTGCTGAGTTTGAACTCAATGGCATTATACAAGTGGCTGCTGCTGAAACAGACTCACTTAAAGTGATGGAAGGCAATTTGGAATTCCAGAAAGCTACTCTGAATGGAATTAGGAAAAGATTTTCTAATAAAATGGAAAAGTTCATCAATGAATCTAAGGGGTTCCAGGCTAACATGCTTGGAGATTTGAACAAGGATTTAGTTCTTTTACTTAAGGAGAAAGGTTCGCTAGGGGATGAGAGTGAGAACTTGAAAATGAAGATCAACGCAATAGAAAGTTCGTCACGTGATTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTGTATTTTCTTAGATCACCCGTGGCAATGAAATG]
[+] EMBL AK069275 [CTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCGCCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGGTCAACGAAGAGATTGAAGAGAATATTCGAAAGACAAGGGAAATAGAGTCAGAAATAGTGAAGCATTCTGAAACTGAAAAGGAGTATATCATGAAAGAGCCTGAACTAATGAAAGGGGTATCAATTGCTGAGTTTGAACTCAATGGCATTATACAAGTGGCTGCTGCTGAAACAGACTCACTTAAAGTGATGGAAGGCAATTTGGAATTCCAGAAAGCTACTCTGAATGGAATTAGGAAAAGATTTTCTAATAAAATGGAAAAGTTCATCAATGAATCTAAGGGGTTCCAGGCTAACATGCTTGGAGATTTGAACAAGGATTTAGTTCTTTTACTTAAGGAGAAAGGTTCGCTAGGGGATGAGAGTGAGAACTTGAAAATGAAGATCAACGCAATAGAAAGTTCGTCACGTGATTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTGTATTTTCTTAGATCACCCGTGGCAATGAAATG]
[+] EMBL CA998470 [ GAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAAGGACATGCTTGACAAGGTCAACGAAGAGATTGAAGAGAATATTCAAAAGACAAGGGAAATAGAGTCAGAAATAGTGAAGCATTCTGAAACTGAAAAGGAGTATATCATGAAAGAGTCTGAACTAATGAAAGGGGTATCAATTGCTGAGTTTGAACTCAATGGCATTATACAAGTGGCTGCTGCTGAAACAGACTCACTTAAAGTGATGGAAGGCAATTTGGAATTCCAGAAAGCTACTCTGAATGGAATTAGGAAAAGATTTTCTAATAAAATGGAAAAGTTCATCAATGAATCTAAGGGGTTCCAGGCTAACATGCTTGGAGATTTGAACAAGGATTTAGTTCTTTTACTTAAGGAGAAAGGTTCGCTAGGGGATGAGAGTGAGAACTTGAAAATGAAGATCAACGCAATAGAAAGTTCGTCACGTGATTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTAGGAA ]
consensusID : consensus_8314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence
[GAGAACTTGAAAATGAAGATCACGCAATAGAAAGTTCGTCACGTGGTTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTAACTGGATATTTAATTAGGCTCGACACGGTTGTCTGTGATAAAAAATACGAAGTTTTTTCTGATTGGCTGTTTTTGTTCTCCTGCGTAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTATATTTTCTTAGATCACCCGTGGCAATGAAATGAAGATCGTCCACATTGCATCAAGGTGAATCATCGTAAAAAAAAAAAAAAAAAGAAGACCAA]
[+] EMBL CA765699 [GAGAACTTGAAAATGAAGATCACGCAATAGAAAGTTCGTCACGTGGTTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTAACTGGATATTTAATTAGGCTCGACACGGTTGTCTGTGATAAAAAATACGAAGTTTTTTCTGATTGGCTGTTTTTGTTCTCCTGCGTAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTATATTTTCTTAGATCACCCGTGGCAATGAAATGAAGATCGTCCACATTGCATCAAGGTGAA ]
[+] EMBL CB096985 [ aaggggCAGTTTTGGAATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATATAAGCAATCTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTAACTGGATGTTTAATTAGGCTCGACACGGTTGTCTGTGATAAAAAATACGAAGTTTTTTCTGATTGGCTGTTTTTGTTCTCCTGCGTAGGTATCCTACCTAATCACGAAGTATATGTAGAGGCATAGCATGTAGCATTCTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCCTGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAAATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTTACTGGGCCACCTCTTGTATATTTTCTTAGATCACCCGTGGCAATGAAATGAAGATCGTCCACATTGCATCAAGGTGAATCATCGTAAAAAAAAAAAAAAAAAGAAGACCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8314#1 ----------------------------CTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCG 32
consensus_8314#2 ------------------------------------------------------------
consensus_8314#0 CGGACCATCGTTGTCTCGTTCTCCTCTTCTTCCGTCGCCGGCGCGGGGAGCTGCTCGTCG 60
consensus_8314#1 CCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAA 92
consensus_8314#2 ------------------------------------------------------------
consensus_8314#0 CCGGCGCGCGGTGATGGCGGAGGACTCCGGCGCCATCCTCCGCCACATATCCTCCCTCAA 120
consensus_8314#1 GGACATGCTTGACAAGGTCAACGAAGAGATTGAAGAGAATATTCGAAAGACAAGGGAAAT 152
consensus_8314#2 ------------------------------------------------------------
consensus_8314#0 GGACATGCTTGACAAGTCTCATCA------TGGTGGATCCATTCGCCAGCGAAGGGAGTC 174
consensus_8314#1 AGAGTCAGAAATAGTGAAGCATTCTGAAACTGAAAAGGAGTATATCATGAAAGAGCCTGA 212
consensus_8314#2 ------------------------------------------------------------
consensus_8314#0 AGTAT--GACCCATCCAAGGATCCTGAAC------GGAAGTCTAAGTCAAAAGATCCGGG 226
consensus_8314#1 ACTAATGAAAGGGGTATCAATTGCTGAGTTTGAACTCAATGGCATTATACAAGTGGCTGC 272
consensus_8314#2 ------------------------------------------------------------
consensus_8314#0 ----ATGGAAATACTGCTTCTGGCCAGACTTGAGCAACAGAGATTTGATCCACTGCTCGC 282
consensus_8314#1 TGCTGAAACAGACTCACTTAAAGTGATGGAAGGCAATTTGGAATTCCAGAAAGCTACTCT 332
consensus_8314#2 ------------------------------------------------------------
consensus_8314#0 T-TTGTGGCAAGC-------AAATGATTGCAGG--ATTCAAGAGAGTCAGCAACATCTTG 332
consensus_8314#1 GAATGGAATTAGGAAAAGATTTTCTAATAAAATGGAAAAGTTCATCAATGAATCTAAGGG 392
consensus_8314#2 ------------------------------------------------------------
consensus_8314#0 CAACAGGATTTGGAGATG-TGCAGTGCAGCGGTGCCCCAATACTACCACAGCTATCATGA 391
consensus_8314#1 GTTCCAGGCTAACATGCTTGGAGATTTGAACAAGGATTTAGTTCTTTTACTTAAGGAGAA 452
consensus_8314#2 ------------------------------------------------------------
consensus_8314#0 AAGAGATGAGAGCATATCTGAAGAAGAATTCGAGAATT-GGCAAATATCTCAACTTACAC 450
consensus_8314#1 AGGTTCGCTAGGGGATGAGAGTGAGAACTTGAAAATGAAGATCAACGCAATAGAAAGTTC 512
consensus_8314#2 ----------------------GAGAACTTGAAAATGAAGATCA-CGCAATAGAAAGTTC 37
consensus_8314#0 CCCTCCTCTTATCGGCCAATGCCAAGTTCTGAGACAGCTGCCAAAAGGAAACAAGCTCCT 510
* *** * * * * * ** *
consensus_8314#1 GTCACGTGATTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGA 572
consensus_8314#2 GTCACGTGGTTACTTTGCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGTTTTGGA 97
consensus_8314#0 GACGCTCTTCAATTTGGACGACCAACCCCAA-AACAAACAACATCTGTTGCTTCTATGCT 569
* * * * ** * *** * * * * ** * * * * **
consensus_8314#1 ATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATAT--AAGCAAT 630
consensus_8314#2 ATCTGAATTACAGTATAAGATTTCAGAATACATGGATGTTATGAAGGATAT--AAGCAAT 155
consensus_8314#0 TTGCAAGGCACCTGAAGAGGTTGACGAAGATATCCATGCCAAGGGGCCTTCTCAATCTAC 629
* * ** * ** ** *** * ** *** * * * * ** * *
consensus_8314#1 CTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTA--- 687
consensus_8314#2 CTGAAGGCTCTATTTAGTTCGATCAATTCTTAGTAACAATATTCATCGGTGGAGGTAACT 215
consensus_8314#0 CATTGAGCAATGTACAAGGCAGTACAATGGAAAACAAATGGTCCATCAGC--AAATAGCA 687
* ** * * * * * * * * * * * **** * * **
consensus_8314#1 ------------------------------------------------------------
consensus_8314#2 GGATATTTAATTAGGCTCGACACGGTTGTCTGTGATAAAAAATACGAAGTTTTTTCTGAT 275
consensus_8314#0 AATTTGTTTTCTGAATTTGACATACCATTTGCTGCTGCGCACTCAAGGAGCTTTG----- 742
consensus_8314#1 ----------------------------TCCTACCTAATCACGAAGTATAT-GTAG--AG 716
consensus_8314#2 TGGCTGTTTTTGTTCTCCTGCGTAGGTATCCTACCTAATCACGAAGTATAT-GTAG--AG 332
consensus_8314#0 -AGACTATGGTTCAATCCATCATACAATTTGGACCTGGTTATAAGCCTCCTAGTCATCAG 801
* **** * * * * ** **
consensus_8314#1 GCATAGCATGTAGCATT-CTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCC 775
consensus_8314#2 GCATAGCATGTAGCATT-CTGGCTGGAGTAAGAATTCCCAATTTTGTTTTAGAGCATTCC 391
consensus_8314#0 GATTGGTGGGTTCCGTTGCTTGTTGGGGCAAAGGA----GACTACGTTGGGAGCCAGTGG 857
* * * ** * ** ** * *** * ** * * *** ** *
consensus_8314#1 TGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAA 835
consensus_8314#2 TGATTTTTCTCCGTTCAAGGAATCATTATCTTGTATAGAGCAGAGTGCGAATAAAATCAA 451
consensus_8314#0 TAATATGGGAGATTTGAATGAATCGGACGATGATATTTGGTAGT-TAAGACCAGAATCAT 916
* ** * ** ** ***** * *** * ** * ** * *****
consensus_8314#1 --ATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTT 893
consensus_8314#2 --ATTGGTTTTGCTTTACAAATTGGCCCTTGCACCTATCAAATCAAATTGGTTTGGCTTT 509
consensus_8314#0 TTACCTATGATGTCATGCTAGTATACTATTATGCTGTTTA--TCTGTCTCGGAGAACGCT 974
* * ** * * * * * ** * * * ** * * * *
consensus_8314#1 ACTGGGCCACCTCTTGTGTATTTTCT-TAGATCACCCGTGGCAATGAAATG--------- 943
consensus_8314#2 ACTGGGCCACCTCTTGTATATTTTCT-TAGATCACCCGTGGCAATGAAATGAAGATCGTC 568
consensus_8314#0 GATGC-TTATGACCTATGTACTTTTGGTGGATGATTTTTGCTATATTTAT---------- 1023
** * * * * ** *** * *** * ** * **
consensus_8314#1 ----------------------------------------------------
consensus_8314#2 CACATTGCATCAAGGTGAATCATCGTAAAAAAAAAAAAAAAAAGAAGACCAA 620
consensus_8314#0 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||