cluster # 8317

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Oryza sativa
cluster # 8317 cluster # 8317 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8317#0 length = 679 sequences # 2

consensus_8317#1 length = 575 sequences # 3

consensusID : consensus_8317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 679
fasta sequence

                              [TCCCCATTATTTTTCCTTACGCTCTCCGCCTCTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCGCGACCGGCGATCTCCCCCGAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCTGCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGCTCGTCAGTCTCTCATTGAGATCTCTCAGTCCCTCCCGGAGAAACCTTCAGCCCAGAACCTGGAGGTGAAGTCACCGAGCCCACGTGCAGCAAACGAAGATCATGAAGATGGAGCAGAGAAATACAGATCAAAGCTGATCTCAATCTCCTACCTTTCTCCGGATGCCCAACCGACGCCGTGCCCTCCCAAGAATGTCCTCACTTAACTGTGACGATGCTCCTACTCGTGCGTGTGTGGCACAGTATATCAGTGTTATACCTCACTTTTAGCTGGAAAGATGGAAATGGAATACTTTTGGGTGCTTATGTTTCTAACCCTAAGAAACATTCAGGGGGAAAAAAAAGAACAGATAGTTGTACAGATGACTTTGTGACGAAGAACTATTTACCAGGAACAGGCTTGCTTAATCCTTGCATGTTATTTTGTTGTTGCATAAGCTTAGTTGTTTCCTTATAATGTATGGTTATTCGAAGTGCTACATTTTGCCCTC]

[+] EMBL CF340624             [TCCCCATTATTTTTCCTTACGCTCTCCGCCTCTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCGCGACCGGCGATCTCCCCCGAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCTGCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGCTCGTCAGTCTCTCATTGAGATCTCTCAGTCCCTCCCGGAGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK070868             [     ATTATTTTTCCTTACGCTCTCCGCCTCTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCGCGACCGGCGATCTCCCCCGAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCTGCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGCTCGTCAGTCTCTCATTGAGATCTCTCAGTCCCTCCCGGAGAAACCTTCAGCCCAGAACCTGGAGGTGAAGTCACCGAGCCCACGTGCAGCAAACGAAGATCATGAAGATGGAGCAGAGAAATACAGATCAAAGCTGATCTCAATCTCCTACCTTTCTCCGGATGCCCAACCGACGCCGTGCCCTCCCAAGAATGTCCTCACTTAACTGTGACGATGCTCCTACTCGTGCGTGTGTGGCACAGTATATCAGTGTTATACCTCACTTTTAGCTGGAAAGATGGAAATGGAATACTTTTGGGTGCTTATGTTTCTAACCCTAAGAAACATTCAGGGGGAAAAAAAAGAACAGATAGTTGTACAGATGACTTTGTGACGAAGAACTATTTACCAGGAACAGGCTTGCTTAATCCTTGCATGTTATTTTGTTGTTGCATAAGCTTAGTTGTTTCCTTATAATGTATGGTTATTCGAAGTGCTACATTTTGCCCTC]




>consensus_8317#0
TCCCCATTATTTTTCCTTACGCTCTCCGCCTCTCCGCCAAACACGCCCAAAATCGTCCTG
CTCCTCCTCCGCTCCATCTACTGGATCCGCGCGACCGGCGATCTCCCCCGAACCTCGACT
GATCTACTGCCTTTGACCGATGGCATCGCCTGCAGCGCCAACAGCAACGGAGTTCACTCA
GGAAGCTGCTCGTCAGTCTCTCATTGAGATCTCTCAGTCCCTCCCGGAGAAACCTTCAGC
CCAGAACCTGGAGGTGAAGTCACCGAGCCCACGTGCAGCAAACGAAGATCATGAAGATGG
AGCAGAGAAATACAGATCAAAGCTGATCTCAATCTCCTACCTTTCTCCGGATGCCCAACC
GACGCCGTGCCCTCCCAAGAATGTCCTCACTTAACTGTGACGATGCTCCTACTCGTGCGT
GTGTGGCACAGTATATCAGTGTTATACCTCACTTTTAGCTGGAAAGATGGAAATGGAATA
CTTTTGGGTGCTTATGTTTCTAACCCTAAGAAACATTCAGGGGGAAAAAAAAGAACAGAT
AGTTGTACAGATGACTTTGTGACGAAGAACTATTTACCAGGAACAGGCTTGCTTAATCCT
TGCATGTTATTTTGTTGTTGCATAAGCTTAGTTGTTTCCTTATAATGTATGGTTATTCGA
AGTGCTACATTTTGCCCTC

consensusID : consensus_8317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 575
fasta sequence

                              [GCTCCGACTGGAGCACGAGGACACTGACATGGACTGAGGAGTAGAAAACGCTCTCCGCCTCTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCGCGACCGGCGATCTCCCCCGAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCTGCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGCTCGTCAGTCTCTCATTGAGATCTCTCAGTCCCTCCCGGAGAAACCTTCAGCCCAGAACCTGGAGGTGAAGTCACCGAGCCCACGTGCAGCAAACGAAGATCATGAAGATGGAGCAGAGAAATACAGATCAAAGCTGATCTCAATCTCCTACCTTTCTCCGGATGCCCAACCGACGCCGTGCCCTCCCAAGAATGTCCTCACTTAACTGTGACGATGCTCCTACTCGTGCGTGTGTGGCACAGTATATCAGTGTTATACCTCACTTTTAGCTGGAAAGATGGAAATGGAATACTTTTTGGGTGCTTATGTTTCTAACCCTAAGAAACATTCAGGGGGAAAAAAAAGAACAGATAGTTG]

[+] EMBL CF340231             [GCTCCGACTGGAGCACGAGGACACTGACATGGACTGAGGAGTAGAAAACGCTCTCCGCCTCTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCGCGACCGGCGATCTCCCCCGAACCTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF338463             [ CTCCGACTGGAGCACGAGGACACTGACATGGACTGAGGAGTAGAAAACGCTCTCCGCCTCTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCGCGACCGGCGATCTCCCCCGAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCTGCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGCTCGTCAGTCTCTCATTGAGATCTCTCAGTCCCTCCCGGAGAAACCTTCAGCCCAGAACCTGGAGGTGAAGTCACCGAGCCCACGTGCAGCAAACGAAGATCATGAAGATGGAGCAGAGAAATACAGATCAAAGCTGATCTCAATCTCCTACCTTTCTCCGGATGCCCAACCGACGCCGTGCCCTCCCAAGAATGTCCTCACTTAACTGTGACGATGCTCCTACTCGTGCGTGTGTGGCACAGTATATCAGTGTTATACCTCACTTTTAGCTGGAAAGATGGAAATGGAATACTTTTTGGGTGCTTATGTT                                               ]
[+] EMBL CF340468             [                         GACATGGACTGAGGAGTAGAAAACGCTCTTCGCCTCTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCGCGACCGGCGATCTCCCCCGAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCTGCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGCTCGTCAGTCTCTCATTGAGATCTCTCAGTCCCTCCCGGAGAAACCTTCAGCCCAGAACCTGGAGGTGAAGTCACCGAGCCCACGTGCAGCAAACGAAGATCATGAAGATGGAGCAGAGAAATACAGATCAAAGCTGATCTCAATCTCCTACCTTTCTCCGGATGCCCAACCGACGCCGTGCCCTCCCAAGAATGTCCTCACTTAACTGTGACGATGCTCCTACTCGTGCGTGTGTGGCACAGTATATCAGTGTTATACCTCACTTTTAGCTGGAAAGATGGAAATGGAATAC TTTTGGGTGCTTATGTTTCTAACCCTAAGAAACATTCAGGGGGAAAAAAAAGAACAGATAGTTG]




>consensus_8317#1
GCTCCGACTGGAGCACGAGGACACTGACATGGACTGAGGAGTAGAAAACGCTCTCCGCCT
CTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCG
CGACCGGCGATCTCCCCCGAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCT
GCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGCTCGTCAGTCTCTCATTGAGATC
TCTCAGTCCCTCCCGGAGAAACCTTCAGCCCAGAACCTGGAGGTGAAGTCACCGAGCCCA
CGTGCAGCAAACGAAGATCATGAAGATGGAGCAGAGAAATACAGATCAAAGCTGATCTCA
ATCTCCTACCTTTCTCCGGATGCCCAACCGACGCCGTGCCCTCCCAAGAATGTCCTCACT
TAACTGTGACGATGCTCCTACTCGTGCGTGTGTGGCACAGTATATCAGTGTTATACCTCA
CTTTTAGCTGGAAAGATGGAAATGGAATACTTTTTGGGTGCTTATGTTTCTAACCCTAAG
AAACATTCAGGGGGAAAAAAAAGAACAGATAGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8317#0      -----------------------------TCCCCATTATTTTTCCTTACGCTCTCCGCCT 31
consensus_8317#1      GCTCCGACTGGAGCACGAGGACACTGACATGGACTGAGGAGTAGAAAACGCTCTCCGCCT 60
                                                   *   *       *     *************

consensus_8317#0      CTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCG 91
consensus_8317#1      CTCCGCCAAACACGCCCAAAATCGTCCTGCTCCTCCTCCGCTCCATCTACTGGATCCGCG 120
                      ************************************************************

consensus_8317#0      CGACCGGCGATCTCCCCCGAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCT 151
consensus_8317#1      CGACCGGCGATCTCCCCCGAACCTCGACTGATCTACTGCCTTTGACCGATGGCATCGCCT 180
                      ************************************************************

consensus_8317#0      GCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGCTCGTCAGTCTCTCATTGAGATC 211
consensus_8317#1      GCAGCGCCAACAGCAACGGAGTTCACTCAGGAAGCTGCTCGTCAGTCTCTCATTGAGATC 240
                      ************************************************************

consensus_8317#0      TCTCAGTCCCTCCCGGAGAAACCTTCAGCCCAGAACCTGGAGGTGAAGTCACCGAGCCCA 271
consensus_8317#1      TCTCAGTCCCTCCCGGAGAAACCTTCAGCCCAGAACCTGGAGGTGAAGTCACCGAGCCCA 300
                      ************************************************************

consensus_8317#0      CGTGCAGCAAACGAAGATCATGAAGATGGAGCAGAGAAATACAGATCAAAGCTGATCTCA 331
consensus_8317#1      CGTGCAGCAAACGAAGATCATGAAGATGGAGCAGAGAAATACAGATCAAAGCTGATCTCA 360
                      ************************************************************

consensus_8317#0      ATCTCCTACCTTTCTCCGGATGCCCAACCGACGCCGTGCCCTCCCAAGAATGTCCTCACT 391
consensus_8317#1      ATCTCCTACCTTTCTCCGGATGCCCAACCGACGCCGTGCCCTCCCAAGAATGTCCTCACT 420
                      ************************************************************

consensus_8317#0      TAACTGTGACGATGCTCCTACTCGTGCGTGTGTGGCACAGTATATCAGTGTTATACCTCA 451
consensus_8317#1      TAACTGTGACGATGCTCCTACTCGTGCGTGTGTGGCACAGTATATCAGTGTTATACCTCA 480
                      ************************************************************

consensus_8317#0      CTTTTAGCTGGAAAGATGGAAATGGAATACTTTT-GGGTGCTTATGTTTCTAACCCTAAG 510
consensus_8317#1      CTTTTAGCTGGAAAGATGGAAATGGAATACTTTTTGGGTGCTTATGTTTCTAACCCTAAG 540
                      ********************************** *************************

consensus_8317#0      AAACATTCAGGGGGAAAAAAAAGAACAGATAGTTGTACAGATGACTTTGTGACGAAGAAC 570
consensus_8317#1      AAACATTCAGGGGGAAAAAAAAGAACAGATAGTTG------------------------- 575
                      ***********************************                         

consensus_8317#0      TATTTACCAGGAACAGGCTTGCTTAATCCTTGCATGTTATTTTGTTGTTGCATAAGCTTA 630
consensus_8317#1      ------------------------------------------------------------
                                                                                  

consensus_8317#0      GTTGTTTCCTTATAATGTATGGTTATTCGAAGTGCTACATTTTGCCCTC 679
consensus_8317#1      -------------------------------------------------