cluster # 832

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Oryza sativa
cluster # 832 cluster # 832 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_832#0 length = 895 sequences # 1

consensus_832#1 length = 550 sequences # 1

consensusID : consensus_832#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 895
fasta sequence

                              [AGCCGCGAAGCCGGTGGAGCCGCTGCCGCTGCTACGAGCCGGCGCGGATACCGCCGCCGCCGCCGCTCTCCGGAGATTCCAGCTTCCGCCGCAGCCACCACGCAGTGTCAGAGCCAACGCTATCAGGGCCTCTCCTCCTTCGAACGGCGCCGGGAGCCCCGACGAGCTACCCGCCGCGCTCCTGCCCAACGCGGCGCGGCGGCGGGACGGCTGCGGGTTCAGCCTCGGCGTGGACCTGGGAGAAGCACGCACCGGAGTCGCCGTCGGCAGGGGCATCACCCTCCCCCGTCCCCTCACCGTTCTGAAGCTGCGTGGGCAGAAGCTGGAGCTGATGCTGCTTGACATAGCTCAGCAGCAGGAGGCGGACGAGCTGATCGTGGGGCTCCCCGTCTCCGCCGACGGGAGCGAGACGCCGCAGTCCAACAAGGTTCGGAGCGTCGTCGGGAGGCTCGCCGTCCAAGCGGCCGACAGGGGATTGCGGGTGTATCTGCAGGATGAGTACGGGACAACGATCGACGCCCTCGAGTTCATGATCTCCAGGGGAGTCAAGAGGTCTGCACGTGATGTCAAATCTGATGCGTATTCTGCCATGATGATTTTGGAGAGATATTTCTCGTCATCAGGTCAAGGGGCTAAGATTGTTCTTCCTAAACAACCACAACTACAGAGCAAATTGTTAGAGAAGTCAAGGCAAGATGCTCAAGTTTAGGAAGCCGTGTACGTTCTAATCTCTCCAACCATAGATAGCAGACTTATCACAACAGCGTTCTTGTTGTTCTACCAGCTAACTTCAATTGCGTAGTACAGTATTTTATATAGTCTTGTTCGCCGTACTCATATGATTAAACGAAGGGAGGATGACTTGTTGACATTCTGCCAATTTATCAAAATTACA]

[+] EMBL AK068935             [AGCCGCGAAGCCGGTGGAGCCGCTGCCGCTGCTACGAGCCGGCGCGGATACCGCCGCCGCCGCCGCTCTCCGGAGATTCCAGCTTCCGCCGCAGCCACCACGCAGTGTCAGAGCCAACGCTATCAGGGCCTCTCCTCCTTCGAACGGCGCCGGGAGCCCCGACGAGCTACCCGCCGCGCTCCTGCCCAACGCGGCGCGGCGGCGGGACGGCTGCGGGTTCAGCCTCGGCGTGGACCTGGGAGAAGCACGCACCGGAGTCGCCGTCGGCAGGGGCATCACCCTCCCCCGTCCCCTCACCGTTCTGAAGCTGCGTGGGCAGAAGCTGGAGCTGATGCTGCTTGACATAGCTCAGCAGCAGGAGGCGGACGAGCTGATCGTGGGGCTCCCCGTCTCCGCCGACGGGAGCGAGACGCCGCAGTCCAACAAGGTTCGGAGCGTCGTCGGGAGGCTCGCCGTCCAAGCGGCCGACAGGGGATTGCGGGTGTATCTGCAGGATGAGTACGGGACAACGATCGACGCCCTCGAGTTCATGATCTCCAGGGGAGTCAAGAGGTCTGCACGTGATGTCAAATCTGATGCGTATTCTGCCATGATGATTTTGGAGAGATATTTCTCGTCATCAGGTCAAGGGGCTAAGATTGTTCTTCCTAAACAACCACAACTACAGAGCAAATTGTTAGAGAAGTCAAGGCAAGATGCTCAAGTTTAGGAAGCCGTGTACGTTCTAATCTCTCCAACCATAGATAGCAGACTTATCACAACAGCGTTCTTGTTGTTCTACCAGCTAACTTCAATTGCGTAGTACAGTATTTTATATAGTCTTGTTCGCCGTACTCATATGATTAAACGAAGGGAGGATGACTTGTTGACATTCTGCCAATTTATCAAAATTACA]




>consensus_832#0
AGCCGCGAAGCCGGTGGAGCCGCTGCCGCTGCTACGAGCCGGCGCGGATACCGCCGCCGC
CGCCGCTCTCCGGAGATTCCAGCTTCCGCCGCAGCCACCACGCAGTGTCAGAGCCAACGC
TATCAGGGCCTCTCCTCCTTCGAACGGCGCCGGGAGCCCCGACGAGCTACCCGCCGCGCT
CCTGCCCAACGCGGCGCGGCGGCGGGACGGCTGCGGGTTCAGCCTCGGCGTGGACCTGGG
AGAAGCACGCACCGGAGTCGCCGTCGGCAGGGGCATCACCCTCCCCCGTCCCCTCACCGT
TCTGAAGCTGCGTGGGCAGAAGCTGGAGCTGATGCTGCTTGACATAGCTCAGCAGCAGGA
GGCGGACGAGCTGATCGTGGGGCTCCCCGTCTCCGCCGACGGGAGCGAGACGCCGCAGTC
CAACAAGGTTCGGAGCGTCGTCGGGAGGCTCGCCGTCCAAGCGGCCGACAGGGGATTGCG
GGTGTATCTGCAGGATGAGTACGGGACAACGATCGACGCCCTCGAGTTCATGATCTCCAG
GGGAGTCAAGAGGTCTGCACGTGATGTCAAATCTGATGCGTATTCTGCCATGATGATTTT
GGAGAGATATTTCTCGTCATCAGGTCAAGGGGCTAAGATTGTTCTTCCTAAACAACCACA
ACTACAGAGCAAATTGTTAGAGAAGTCAAGGCAAGATGCTCAAGTTTAGGAAGCCGTGTA
CGTTCTAATCTCTCCAACCATAGATAGCAGACTTATCACAACAGCGTTCTTGTTGTTCTA
CCAGCTAACTTCAATTGCGTAGTACAGTATTTTATATAGTCTTGTTCGCCGTACTCATAT
GATTAAACGAAGGGAGGATGACTTGTTGACATTCTGCCAATTTATCAAAATTACA

consensusID : consensus_832#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [GAGGACGAGCAAGGGGAGTCAAGAGGTCTGCACGTGATGTCAAATCTGATGCGTATTCTGCCATGATGATTTTGGAGAGATATTTCTCGTCATCAGGTCAAGGGGCTAAGATTGTTCTTCCTAAACAACCACAACTACAGAGCAAATTGTTAGAGAAGTCAAGGCAAGATGCTCAAGTTTAGGAAGCCGTGTACGTTCTAATCTCTCCAACCATAGATAGCAGACTTATCACAACAGCGTTCTTGTTGTTCTACCAGCTAACTTCAATTGCGTAGTACAGTATTTTATATAGTCTTGTTCGCCGTACTCATATGATTAAACGAAGGGAGGATGACTTGTTGACATTCTGCCAATTTATCAAAATTACAAGTTTCGATCAAAATTCTTCATTTGCTGTTTCAAATCAACCAGATGTAAATCGTGCAACTTGCCCGATGATAAATCTCGTGGTCAGTTCTGAGTCTGGATTTCGTTGCTAGTAGACTTCTTGTTCAGATACTTGTATGTCACTTAATAATAATAGCATTATGGTTTCCAAGTCCAAAAAAAA]

[-] EMBL CA759052             [GAGGACGAGCAAGGGGAGTCAAGAGGTCTGCACGTGATGTCAAATCTGATGCGTATTCTGCCATGATGATTTTGGAGAGATATTTCTCGTCATCAGGTCAAGGGGCTAAGATTGTTCTTCCTAAACAACCACAACTACAGAGCAAATTGTTAGAGAAGTCAAGGCAAGATGCTCAAGTTTAGGAAGCCGTGTACGTTCTAATCTCTCCAACCATAGATAGCAGACTTATCACAACAGCGTTCTTGTTGTTCTACCAGCTAACTTCAATTGCGTAGTACAGTATTTTATATAGTCTTGTTCGCCGTACTCATATGATTAAACGAAGGGAGGATGACTTGTTGACATTCTGCCAATTTATCAAAATTACAAGTTTCGATCAAAATTCTTCATTTGCTGTTTCAAATCAACCAGATGTAAATCGTGCAACTTGCCCGATGATAAATCTCGTGGTCAGTTCTGAGTCTGGATTTCGTTGCTAGTAGACTTCTTGTTCAGATACTTGTATGTCACTTAATAATAATAGCATTATGGTTTCCAAGTCCAAAAAAAA]




>consensus_832#1
GAGGACGAGCAAGGGGAGTCAAGAGGTCTGCACGTGATGTCAAATCTGATGCGTATTCTG
CCATGATGATTTTGGAGAGATATTTCTCGTCATCAGGTCAAGGGGCTAAGATTGTTCTTC
CTAAACAACCACAACTACAGAGCAAATTGTTAGAGAAGTCAAGGCAAGATGCTCAAGTTT
AGGAAGCCGTGTACGTTCTAATCTCTCCAACCATAGATAGCAGACTTATCACAACAGCGT
TCTTGTTGTTCTACCAGCTAACTTCAATTGCGTAGTACAGTATTTTATATAGTCTTGTTC
GCCGTACTCATATGATTAAACGAAGGGAGGATGACTTGTTGACATTCTGCCAATTTATCA
AAATTACAAGTTTCGATCAAAATTCTTCATTTGCTGTTTCAAATCAACCAGATGTAAATC
GTGCAACTTGCCCGATGATAAATCTCGTGGTCAGTTCTGAGTCTGGATTTCGTTGCTAGT
AGACTTCTTGTTCAGATACTTGTATGTCACTTAATAATAATAGCATTATGGTTTCCAAGT
CCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_832#0      AGCCGCGAAGCCGGTGGAGCCGCTGCCGCTGCTACGAGCCGGCGCGGATACCGCCGCCGC 60
consensus_832#1      ------------------------------------------------------------
                                                                                 

consensus_832#0      CGCCGCTCTCCGGAGATTCCAGCTTCCGCCGCAGCCACCACGCAGTGTCAGAGCCAACGC 120
consensus_832#1      ------------------------------------------------------------
                                                                                 

consensus_832#0      TATCAGGGCCTCTCCTCCTTCGAACGGCGCCGGGAGCCCCGACGAGCTACCCGCCGCGCT 180
consensus_832#1      ------------------------------------------------------------
                                                                                 

consensus_832#0      CCTGCCCAACGCGGCGCGGCGGCGGGACGGCTGCGGGTTCAGCCTCGGCGTGGACCTGGG 240
consensus_832#1      ------------------------------------------------------------
                                                                                 

consensus_832#0      AGAAGCACGCACCGGAGTCGCCGTCGGCAGGGGCATCACCCTCCCCCGTCCCCTCACCGT 300
consensus_832#1      ------------------------------------------------------------
                                                                                 

consensus_832#0      TCTGAAGCTGCGTGGGCAGAAGCTGGAGCTGATGCTGCTTGACATAGCTCAGCAGCAGGA 360
consensus_832#1      ------------------------------------------------------------
                                                                                 

consensus_832#0      GGCGGACGAGCTGATCGTGGGGCTCCCCGTCTCCGCCGACGGGAGCGAGACGCCGCAGTC 420
consensus_832#1      ------------------------------------------------------------
                                                                                 

consensus_832#0      CAACAAGGTTCGGAGCGTCGTCGGGAGGCTCGCCGTCCAAGCGGCCGACAGGGGATTGCG 480
consensus_832#1      ------------------------------------------------------------
                                                                                 

consensus_832#0      GGTGTATCTGCAGGATGAGTACGGGACAACGATCGACGCCCTCGAGTTCATGATCTCCAG 540
consensus_832#1      -------------------------------------------GAGGACGAG----CAAG 13
                                                                ***  *  *    * **

consensus_832#0      GGGAGTCAAGAGGTCTGCACGTGATGTCAAATCTGATGCGTATTCTGCCATGATGATTTT 600
consensus_832#1      GGGAGTCAAGAGGTCTGCACGTGATGTCAAATCTGATGCGTATTCTGCCATGATGATTTT 73
                     ************************************************************

consensus_832#0      GGAGAGATATTTCTCGTCATCAGGTCAAGGGGCTAAGATTGTTCTTCCTAAACAACCACA 660
consensus_832#1      GGAGAGATATTTCTCGTCATCAGGTCAAGGGGCTAAGATTGTTCTTCCTAAACAACCACA 133
                     ************************************************************

consensus_832#0      ACTACAGAGCAAATTGTTAGAGAAGTCAAGGCAAGATGCTCAAGTTTAGGAAGCCGTGTA 720
consensus_832#1      ACTACAGAGCAAATTGTTAGAGAAGTCAAGGCAAGATGCTCAAGTTTAGGAAGCCGTGTA 193
                     ************************************************************

consensus_832#0      CGTTCTAATCTCTCCAACCATAGATAGCAGACTTATCACAACAGCGTTCTTGTTGTTCTA 780
consensus_832#1      CGTTCTAATCTCTCCAACCATAGATAGCAGACTTATCACAACAGCGTTCTTGTTGTTCTA 253
                     ************************************************************

consensus_832#0      CCAGCTAACTTCAATTGCGTAGTACAGTATTTTATATAGTCTTGTTCGCCGTACTCATAT 840
consensus_832#1      CCAGCTAACTTCAATTGCGTAGTACAGTATTTTATATAGTCTTGTTCGCCGTACTCATAT 313
                     ************************************************************

consensus_832#0      GATTAAACGAAGGGAGGATGACTTGTTGACATTCTGCCAATTTATCAAAATTACA----- 895
consensus_832#1      GATTAAACGAAGGGAGGATGACTTGTTGACATTCTGCCAATTTATCAAAATTACAAGTTT 373
                     *******************************************************     

consensus_832#0      ------------------------------------------------------------
consensus_832#1      CGATCAAAATTCTTCATTTGCTGTTTCAAATCAACCAGATGTAAATCGTGCAACTTGCCC 433
                                                                                 

consensus_832#0      ------------------------------------------------------------
consensus_832#1      GATGATAAATCTCGTGGTCAGTTCTGAGTCTGGATTTCGTTGCTAGTAGACTTCTTGTTC 493
                                                                                 

consensus_832#0      ---------------------------------------------------------
consensus_832#1      AGATACTTGTATGTCACTTAATAATAATAGCATTATGGTTTCCAAGTCCAAAAAAAA 550