These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1004 fasta sequence [AGAAACATCTCTTAAAAGGAAAAAGTACAGCGAAGGTCCCTAAACTTGTCGTCAAGTTACAAAATCATCCATCAACCGCAAAATCAGATATCGACCGTCCCTTAACTAATCAAAACTGGTCATAATAGCTCCTTCGATAGTGTTGACCCCGGTTTTATCCTACGTAGCGGCTGAGTCAACGTAGGACCCATGTGGACCCCACATGTCAGGATGCCACGCCATCTCTTTCCCTTCCTCCTCATACTCTCTCTCTTCTCTTCTTCTTTCTCCTCTTCTCTGGGCAAACTGTTCGGCGGCTGGGGAGGAGGCCGCCGGGGCGAGGCGGCAAAGGAGGAGAGCGGCGCTGCGACGGCTGCCGGCGGCGGCCGCAGTGGGGAGGCGGCCGTTTCATGGAGGCCACATCCCGCACCAACAACACCAACAACCACCCGGCAGCGACGGCGAATGAGGGGATGCTCTCCTTCTCGTCGGTGTCGACGATGCGGCTGTCCACAGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCG-GTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAATCCTGCCATTTTGAGCAAAATGCTCAAGTGTATCGTCTCTGCTCTGAGTTCTGAACTTTGAACATGCAAGCGAAAGCAGAACCAGATGGAGCGCTCTTCTTCCAAGCCGGCCATTGC] [-] EMBL AK062363 [AGAAACATCTCTTAAAAGGAAAAAGTACAGCGAAGGTCCCTAAACTTGTCGTCAAGTTACAAAATCATCCATCAACCGCAAAATCAGATATCGACCGTCCCTTAACTAATCAAAACTGGTCATAATAGCTCCTTCGATAGTGTTGACCCCGGTTTTATCCTACGTAGCGGCTGAGTCAACGTAGGACCCATGTGGACCCCACATGTCAGGATGCCACGCCATCTCTTTCCCTTCCTCCTCATACTCTCTCTCTTCTCTTCTTCTTTCTCCTCTTCTCTGGGCAAACTGTTCGGCGGCTGGGGAGGAGGCCGCCGGGGCGACGCGGCAAAGGAGGAGAGCGGCGCTGCGACGGCTGCCGGCGGCGGCCGCAGTGGGGAGGCGGCCGTTCCATGGAGGCCACATCCCGCGCCAGCAACACCAACAACCACCCGGCAGCGACGGCGAATGAGGGGATGCTCTCCTCCTCATCGGCGTCGACGACGCGGCTGTCCACGGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGAGACGGCGACAGCCGCAGCGCACGCATCAGGCG GTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAATGGCTGCTGCGCCTCGAGGAGAGCGGGGTGG ] [+] EMBL AK099506 [ GGGAGGAGGCAGCCGGGGCGAGGCGGGAGAGGAGGAGAGCGGCGCTGCGACGGCTGCCGGCGGCGGCCGCAGTGGGGAGGCGGCCGTTTCATGGAGGCCACATCCCGCACCAACAACACCAACAACCACCCGGCAGCGACGGCGAATGAGGGGATGCTCTCCTTCTCGTCGGTGTCGACGATGCGGCTGTCCACAGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACGTCGACAGCCGCAGCGCACGCATCAGGCG GTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAATCCTGC ] [+] EMBL CB650891 [ AGGCGGCCCTAGAAGAGAGCGGCGCTGCGACGGCTGCCGGCGGCGGCCGCACTGGGGAGGCGGCCGTATCATGGAGGCCACATCCCGCACCAACAACACCAACAACCACCCGGCAGCGACGGCGAATGACGGGATGCTCTCCTTCTCGTCGGTGTCGACGATGCGGCTGTCCACAGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACCGCGACCTCCGCAGCGCACGCATCATGCGAGACGCGGCCATCACCATCCCGAGGTTAATACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCGTATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAATCCTGCCATTTTGAGCAAAATGCTCAAGTGTATCGTCTCTGCTCTGAGTTCTGAACTTTGAACATGCAAGCGAAAGCAGAACCAGATGGAGCGCTCTTCTTCCAAGCCGGCCATTGC] consensusID : consensus_8320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [ACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAANAAAAAAAAAAAAAAA] [+] EMBL AU174092 [ACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCCGCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCACCATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAANAAAAAAAAAAAAAAA] consensusID : consensus_8320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence [ANNGGTGAGCCAGAGGNACGAGNACAAGNGGGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAAAAAAA] [+] EMBL CA763999 [ANNGGTGAGCCAGAGGNACGAGNACAAGNGGGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8320#0 AGAAACATCTCTTAAAAGGAAAAAGTACAGCGAAGGTCCCTAAACTTGTCGTCAAGTTAC 60 consensus_8320#1 ------------------------------------------------------------ consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 AAAATCATCCATCAACCGCAAAATCAGATATCGACCGTCCCTTAACTAATCAAAACTGGT 120 consensus_8320#1 ------------------------------------------------------------ consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 CATAATAGCTCCTTCGATAGTGTTGACCCCGGTTTTATCCTACGTAGCGGCTGAGTCAAC 180 consensus_8320#1 ------------------------------------------------------------ consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 GTAGGACCCATGTGGACCCCACATGTCAGGATGCCACGCCATCTCTTTCCCTTCCTCCTC 240 consensus_8320#1 ------------------------------------------------------------ consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 ATACTCTCTCTCTTCTCTTCTTCTTTCTCCTCTTCTCTGGGCAAACTGTTCGGCGGCTGG 300 consensus_8320#1 ------------------------------------------------------------ consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 GGAGGAGGCCGCCGGGGCGAGGCGGCAAAGGAGGAGAGCGGCGCTGCGACGGCTGCCGGC 360 consensus_8320#1 ------------------------------------------------------------ consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 GGCGGCCGCAGTGGGGAGGCGGCCGTTTCATGGAGGCCACATCCCGCACCAACAACACCA 420 consensus_8320#1 ------------------------------------------------------------ consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 ACAACCACCCGGCAGCGACGGCGAATGAGGGGATGCTCTCCTTCTCGTCGGTGTCGACGA 480 consensus_8320#1 ------------------------------------------------------------ consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 TGCGGCTGTCCACAGGGAGACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCC 540 consensus_8320#1 -------------------ACAGCCGTTGCTCGCCCCCGGCCGCCGCCAGCTTCTCCTCC 41 consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 GCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCAC 600 consensus_8320#1 GCCTCCCGCGCCGGGACGGCGACAGCCGCAGCGCACGCATCAGGCGGTCGCGGCCATCAC 101 consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 CATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGC 660 consensus_8320#1 CATCCCGAGGTTAGTACTGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGC 161 consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 GGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGT 720 consensus_8320#1 GGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACCAGCAATAAAAATCAAGGGCTTGT 221 consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 TGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAAC 780 consensus_8320#1 TGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTCAAC 281 consensus_8320#2 --------------------------------------------------ANNGGTGAGC 10 * * * consensus_8320#0 CTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTT 840 consensus_8320#1 CTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTT 341 consensus_8320#2 CAGAGGNAC-GAGNACAA--GNGGGAAAAGGACAAACTTGTGTGCATATGTACTATGTTT 67 * * * * ** ** * * * ************************************ consensus_8320#0 ACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAATCCTGCCATTTTG 900 consensus_8320#1 ACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAANAA-------AAAAAA 394 consensus_8320#2 ACCATGTCAACATTCACAGATAATTCCCTGAAGCAATTCTATAAAAAAAAAA-------- 119 ******************************************** ** consensus_8320#0 AGCAAAATGCTCAAGTGTATCGTCTCTGCTCTGAGTTCTGAACTTTGAACATGCAAGCGA 960 consensus_8320#1 AAAAAAA----------------------------------------------------- 401 consensus_8320#2 ------------------------------------------------------------ consensus_8320#0 AAGCAGAACCAGATGGAGCGCTCTTCTTCCAAGCCGGCCATTGC 1004 consensus_8320#1 -------------------------------------------- consensus_8320#2 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||