Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8321 cluster # 8321       Sequences # 5       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8321#0 length = 1060 sequences # 5  
consensusID : consensus_8321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1060
fasta sequence 
                              [TTAACCAATTTTATTGGAACTCTTGTCAAAGGCAAATATGTATCCTTGGCTGCAAAGAATTGGAGAAAGGTACCTGAAGCAAGCAAGACGAAAGTTTGGACATCTGTTCAGGGAATTTTTGACATTGAGGATCATTACAAACCTTGGATTTTGAAATCAGCTAGCAAAAAGTGGAAAGATTTTAAAGCTGTCTTGAAGAGAATGTACTTCAATTCTGAGTTATCATGGAGACAAAATGTACTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGGAAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTCAATGGAACTCACACCACTGGTTCACGAGGTTTTGCAGTTGTTCTTGATCAAACGGAGCTTAAAGAGAACAGAAAAGTTGGACGGGCTGAACTCTATGTAATTACTCATACCAAAAGAAATGGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAATAGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAATTGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAGCCGTCTAGTAAAGTGACATCACTTCCTCAGCAAAAACAGAAGTTTAGATCTCCTCATCTAGAATTGCATAAACAGTCAGAGCCTTTTGGTCAAGTGACAT]

[+] EMBL CF196236             [TTAACCAATTTTATTGGAACTCTTGTCAAAGGCAAATATGTATCCTTGGCTGCAAAGAATTGGAGAAAGGTACCTGAAGCAAGCAAGACGAAAGTTTGGACATCTGTTCAGGGAATTTTTGACATTGAGGATCATTACAAACCTTGGATTTTGAAATCAGCTAGCAAAAAGTGGAAAGATTTTAAAGCTGTCTTGAAGAGAATGTACTTCAATTCTGAGTTATCATGGAGACAAAATGTACTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGGAAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTCAATGGAACTCACACCACTGGTTCACGNNNTTTTGCAGTTGTTCTTGATCAAACGGAGCTTAANNNNNACANNNNNGTTGGACGGGCTNNNNNCTATGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB647790             [                                                               AGAAAGGTACCTGAAGCAAGCAAGACGAAAGTTTGGACATCTGTTCAGGGAATTTTTGACATTGAGGATCATTACAAACCTTGGATTTTGAAATCAGCTAGCAAAAAGTGGAAAGATTTTAAAGCTGTCTTGAAGAGAATGTACTTCAATTCTGAGTTATCATGGAGACAAAATGTACTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGGAAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTCAATGGAACTCACACCACTGGTTCACGAGGTTTTGCAGTTGTTCTTGATCAAACGGAGCTTAAAGAGAACAGAAAAGTTGGACGGGCTGAACTCTATGTAATTACTCATACCAAAAGAAATGGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTACAAAGTATGTTGCTAGCTTCCCAGGG                                                                                                                                                                                                                                            ]
[+] EMBL CB665120             [                                                                                                                                                                                                                       TGAGTCATCATGGAGACAAAATGTACTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGGAAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTCAATGGAACTCACACCACTGGTTCACGAGGTTTTGCAGTTGTTCTTGATCAAACGGAGCTTAAAGAGAACAGAAAAGTTGGACGGGCTGAACTCTATGTAATTACTCATACCAAAAGAAATGGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAATAGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAATTGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAGCCGTCTAGTAAAGTGACATCACTTCCTCAGCAANAACAGAAGTTTAGATCTCCTCATCTAGAATTGC                                 ]
[+] EMBL CB650581             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATGTAATCTCTCATACCAAAAGAAATGGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAATAGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAATTGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAGCCGTCTAGTAAAGTGACATCACTTCCTCAGCAAAAACAGAAGTTTAGATCTCCTCATCTAGAATTGCATAAACAGTCAGAGCCTTTTGGTCAAGTGACAT]
[+] EMBL CB678197             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAATAGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAATTGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAGCCGTCTAGTAAAGTGACATCACTTCCTCAGCAAAAACAGAAGTTTAGATCTCCTCATCTAGAATTGCATAAACAGTCAGAGCCTTTTGGTCAAGTGACAT]




>consensus_8321#0
TTAACCAATTTTATTGGAACTCTTGTCAAAGGCAAATATGTATCCTTGGCTGCAAAGAAT
TGGAGAAAGGTACCTGAAGCAAGCAAGACGAAAGTTTGGACATCTGTTCAGGGAATTTTT
GACATTGAGGATCATTACAAACCTTGGATTTTGAAATCAGCTAGCAAAAAGTGGAAAGAT
TTTAAAGCTGTCTTGAAGAGAATGTACTTCAATTCTGAGTTATCATGGAGACAAAATGTA
CTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGG
AAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTC
AATGGAACTCACACCACTGGTTCACGAGGTTTTGCAGTTGTTCTTGATCAAACGGAGCTT
AAAGAGAACAGAAAAGTTGGACGGGCTGAACTCTATGTAATTACTCATACCAAAAGAAAT
GGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAA
CCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAG
GAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCA
CCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGAT
ATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAA
AAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAAT
AGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAAT
TGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAG
CCGTCTAGTAAAGTGACATCACTTCCTCAGCAAAAACAGAAGTTTAGATCTCCTCATCTA
GAATTGCATAAACAGTCAGAGCCTTTTGGTCAAGTGACAT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)