cluster # 8329

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Oryza sativa
cluster # 8329 cluster # 8329 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8329#0 length = 758 sequences # 1

consensus_8329#1 length = 465 sequences # 4

consensusID : consensus_8329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 758
fasta sequence

                              [TGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAGCCTCGGCCCATCAATGTTCTCCCGTACGCCGTGCCCAGCCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGATGGTACGCCGACGGATCTCGACCAATAATCGGCAGGATTTCCATCCCACAGCTCGCATCTGTATAATCTGCATATCTTATAGGTGTAGTATGTAGGAATTTAAAATGTGCTGCATTTAATTTCTACGTTTTTCACTTTCCTGCATTTTGTACAACCAGTGTGCTCTAAAAAAAAAACTACTGTTCCTGCTTTGCGGAATCACATAATGTAATGCAAGATGGGTTCGTCGTTCGGCGAACATAGTAGCACACAGGAAGGTGTTTCAAACAATTGTATCACGACCAGGATTTCTGTCCACCGGGTTTTCTTTTGTCTTGCTAGTAGACGATTGTAAAGAGTTTGAGTGACTCCTAGCTTTGGTGTGTAA]

[+] EMBL AK109207             [TGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAGCCTCGGCCCATCAATGTTCTCCCGTACGCCGTGCCCAGCCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGATGGTACGCCGACGGATCTCGACCAATAATCGGCAGGATTTCCATCCCACAGCTCGCATCTGTATAATCTGCATATCTTATAGGTGTAGTATGTAGGAATTTAAAATGTGCTGCATTTAATTTCTACGTTTTTCACTTTCCTGCATTTTGTACAACCAGTGTGCTCTAAAAAAAAAACTACTGTTCCTGCTTTGCGGAATCACATAATGTAATGCAAGATGGGTTCGTCGTTCGGCGAACATAGTAGCACACAGGAAGGTGTTTCAAACAATTGTATCACGACCAGGATTTCTGTCCACCGGGTTTTCTTTTGTCTTGCTAGTAGACGATTGTAAAGAGTTTGAGTGACTCCTAGCTTTGGTGTGTAA]




>consensus_8329#0
TGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTC
GGGGAGTTGAAAGCCTCGGCCCATCAATGTTCTCCCGTACGCCGTGCCCAGCCCAACCGC
GGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGA
CGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCC
ATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACA
GATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGA
TGCGTGTGCTCATCCGTCAACGACTCAACGATGGTACGCCGACGGATCTCGACCAATAAT
CGGCAGGATTTCCATCCCACAGCTCGCATCTGTATAATCTGCATATCTTATAGGTGTAGT
ATGTAGGAATTTAAAATGTGCTGCATTTAATTTCTACGTTTTTCACTTTCCTGCATTTTG
TACAACCAGTGTGCTCTAAAAAAAAAACTACTGTTCCTGCTTTGCGGAATCACATAATGT
AATGCAAGATGGGTTCGTCGTTCGGCGAACATAGTAGCACACAGGAAGGTGTTTCAAACA
ATTGTATCACGACCAGGATTTCTGTCCACCGGGTTTTCTTTTGTCTTGCTAGTAGACGAT
TGTAAAGAGTTTGAGTGACTCCTAGCTTTGGTGTGTAA

consensusID : consensus_8329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 465
fasta sequence

                              [GTGCCCAGCCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGC-AAACTGCTCTGTTCCTGATGGGAAATC-ATTTCCTAGTTA]

[-] EMBL BU672911             [GTGCCCAGCCCTTCTGCGGCTCAGGTCGACGTTAGCTCCTCGCCGGCGTCGACTCAGTTCGCTCGACCGGGACGGGACGTCGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGGCCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGC AAACTGCTCTGTTCCTGATGGGAAATC ATTTCCTAGTT ]
[-] EMBL BU673767             [        CCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGCAAAACTGCTCTGTTCCTGATGGGAAATCAATTTTCTAGTTA]
[-] EMBL CB965948             [        CCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGCAAAACTGCTCTGTTCCTGATGGGAAATC ATTTTCTAGTTA]
[-] EMBL CB966421             [        CCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGC AAACTGCTCTGTTCCTGATGGGAAATCAATTTCCTAGTTA]




>consensus_8329#1
GTGCCCAGCCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTC
GCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCG
ACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTC
ACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCC
CACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAA
TACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAG
AATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTA
TGTTGCAAACTGCTCTGTTCCTGATGGGAAATCATTTCCTAGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8329#0      TGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTC 60
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#0      GGGGAGTTGAAAGCCTCGGCCCATCAATGTTCTCCCGTACGCCGTGCCCAGCCCAACCGC 120
consensus_8329#1      -------------------------------------------GTGCCCAGCCCAACCGC 17
                                                                 *****************

consensus_8329#0      GGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGA 180
consensus_8329#1      GGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGA 77
                      ************************************************************

consensus_8329#0      CGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCC 240
consensus_8329#1      CGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCC 137
                      ************************************************************

consensus_8329#0      ATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACA 300
consensus_8329#1      ATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACA 197
                      ************************************************************

consensus_8329#0      GATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGA 360
consensus_8329#1      GATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGA 257
                      ************************************************************

consensus_8329#0      TGCGTGTGCTCATCCGTCAACGACTCAACGATGGTACGCCGACGGATCTCGACCAATAAT 420
consensus_8329#1      TGCGTGTGCTCATCCGTCAACGACTCAACGGTA-TGCACCTAAATACTTT---CAATTTT 313
                      ****************************** *  * * ** *   *  *    ****  *

consensus_8329#0      CGGCAGGATTTCCATCCCACAGCTCGCATCTGTATAATCTGCATATCTTATAGGTGTAGT 480
consensus_8329#1      TTTTAGAG----CAAAGCATGATTTCTGTTT---TGTTCTACAATGCTTATCAGAATAGT 366
                          **      **   **    *    * *   *  *** **   *****  *  ****

consensus_8329#0      ATGTAGGAATTTAAAATGTGCTGCATTTAATTTCTACGTTT---TTCACTTTCCTGCATT 537
consensus_8329#1      ACT----AGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATG 422
                      *      * ***  *   *  ** * * ** *   ** **     *   * *  *  ** 

consensus_8329#0      TTGTACAACCAGTGTGCTCTAAAAAAAAAACTACTGTTCCTGCTTTGCGGAATCACATAA 597
consensus_8329#1      TTGCA-AACTGCTCTGTTCCTGATGGGAAATCAT--TTCCTAGTTA-------------- 465
                      *** * ***   * ** **   *    ***  *   *****  **               

consensus_8329#0      TGTAATGCAAGATGGGTTCGTCGTTCGGCGAACATAGTAGCACACAGGAAGGTGTTTCAA 657
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#0      ACAATTGTATCACGACCAGGATTTCTGTCCACCGGGTTTTCTTTTGTCTTGCTAGTAGAC 717
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#0      GATTGTAAAGAGTTTGAGTGACTCCTAGCTTTGGTGTGTAA 758
consensus_8329#1      -----------------------------------------