These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [TGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAGCCTCGGCCCATCAATGTTCTCCCGTACGCCGTGCCCAGCCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGATGGTACGCCGACGGATCTCGACCAATAATCGGCAGGATTTCCATCCCACAGCTCGCATCTGTATAATCTGCATATCTTATAGGTGTAGTATGTAGGAATTTAAAATGTGCTGCATTTAATTTCTACGTTTTTCACTTTCCTGCATTTTGTACAACCAGTGTGCTCTAAAAAAAAAACTACTGTTCCTGCTTTGCGGAATCACATAATGTAATGCAAGATGGGTTCGTCGTTCGGCGAACATAGTAGCACACAGGAAGGTGTTTCAAACAATTGTATCACGACCAGGATTTCTGTCCACCGGGTTTTCTTTTGTCTTGCTAGTAGACGATTGTAAAGAGTTTGAGTGACTCCTAGCTTTGGTGTGTAA] [+] EMBL AK109207 [TGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAGCCTCGGCCCATCAATGTTCTCCCGTACGCCGTGCCCAGCCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGATGGTACGCCGACGGATCTCGACCAATAATCGGCAGGATTTCCATCCCACAGCTCGCATCTGTATAATCTGCATATCTTATAGGTGTAGTATGTAGGAATTTAAAATGTGCTGCATTTAATTTCTACGTTTTTCACTTTCCTGCATTTTGTACAACCAGTGTGCTCTAAAAAAAAAACTACTGTTCCTGCTTTGCGGAATCACATAATGTAATGCAAGATGGGTTCGTCGTTCGGCGAACATAGTAGCACACAGGAAGGTGTTTCAAACAATTGTATCACGACCAGGATTTCTGTCCACCGGGTTTTCTTTTGTCTTGCTAGTAGACGATTGTAAAGAGTTTGAGTGACTCCTAGCTTTGGTGTGTAA] consensusID : consensus_8329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 465 fasta sequence [GTGCCCAGCCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGC-AAACTGCTCTGTTCCTGATGGGAAATC-ATTTCCTAGTTA] [-] EMBL BU672911 [GTGCCCAGCCCTTCTGCGGCTCAGGTCGACGTTAGCTCCTCGCCGGCGTCGACTCAGTTCGCTCGACCGGGACGGGACGTCGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGGCCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGC AAACTGCTCTGTTCCTGATGGGAAATC ATTTCCTAGTT ] [-] EMBL BU673767 [ CCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGCAAAACTGCTCTGTTCCTGATGGGAAATCAATTTTCTAGTTA] [-] EMBL CB965948 [ CCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGCAAAACTGCTCTGTTCCTGATGGGAAATC ATTTTCTAGTTA] [-] EMBL CB966421 [ CCCAACCGCGGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGACGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCCATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACAGATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGATGCGTGTGCTCATCCGTCAACGACTCAACGGTATGCACCTAAATACTTTCAATTTTTTTTAGAGCAAAGCATGATTTCTGTTTTGTTCTACAATGCTTATCAGAATAGTACTAGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATGTTGC AAACTGCTCTGTTCCTGATGGGAAATCAATTTCCTAGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8329#0 TGCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTC 60 consensus_8329#1 ------------------------------------------------------------ consensus_8329#0 GGGGAGTTGAAAGCCTCGGCCCATCAATGTTCTCCCGTACGCCGTGCCCAGCCCAACCGC 120 consensus_8329#1 -------------------------------------------GTGCCCAGCCCAACCGC 17 ***************** consensus_8329#0 GGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGA 180 consensus_8329#1 GGCTCAGGACGACGCTAGCTCCTCGCCGGCGGCGACTCAGTTCGCTCGACCGGGACGGGA 77 ************************************************************ consensus_8329#0 CGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCC 240 consensus_8329#1 CGACGGCTCCCCTCTCCCGCGAAGCTCGCCGACGGCGACGGCGACCGCCACATCTCGTCC 137 ************************************************************ consensus_8329#0 ATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACA 300 consensus_8329#1 ATGCGCAGCTCCGGTCGGAGATTCCTGCCTTTCAGCTTCAGTCACTCCATGAAGCACACA 197 ************************************************************ consensus_8329#0 GATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGA 360 consensus_8329#1 GATTGGAGATCCACCAGCCCTGCTGTGTGATGTTTGTCTCCCCCACTCATCAGTTTTTGA 257 ************************************************************ consensus_8329#0 TGCGTGTGCTCATCCGTCAACGACTCAACGATGGTACGCCGACGGATCTCGACCAATAAT 420 consensus_8329#1 TGCGTGTGCTCATCCGTCAACGACTCAACGGTA-TGCACCTAAATACTTT---CAATTTT 313 ****************************** * * * ** * * * **** * consensus_8329#0 CGGCAGGATTTCCATCCCACAGCTCGCATCTGTATAATCTGCATATCTTATAGGTGTAGT 480 consensus_8329#1 TTTTAGAG----CAAAGCATGATTTCTGTTT---TGTTCTACAATGCTTATCAGAATAGT 366 ** ** ** * * * * *** ** ***** * **** consensus_8329#0 ATGTAGGAATTTAAAATGTGCTGCATTTAATTTCTACGTTT---TTCACTTTCCTGCATT 537 consensus_8329#1 ACT----AGTTTTTATGATAGTGAAATCAAGTAGCACATTAGCACTGTGTATTTTCTATG 422 * * *** * * ** * * ** * ** ** * * * * ** consensus_8329#0 TTGTACAACCAGTGTGCTCTAAAAAAAAAACTACTGTTCCTGCTTTGCGGAATCACATAA 597 consensus_8329#1 TTGCA-AACTGCTCTGTTCCTGATGGGAAATCAT--TTCCTAGTTA-------------- 465 *** * *** * ** ** * *** * ***** ** consensus_8329#0 TGTAATGCAAGATGGGTTCGTCGTTCGGCGAACATAGTAGCACACAGGAAGGTGTTTCAA 657 consensus_8329#1 ------------------------------------------------------------ consensus_8329#0 ACAATTGTATCACGACCAGGATTTCTGTCCACCGGGTTTTCTTTTGTCTTGCTAGTAGAC 717 consensus_8329#1 ------------------------------------------------------------ consensus_8329#0 GATTGTAAAGAGTTTGAGTGACTCCTAGCTTTGGTGTGTAA 758 consensus_8329#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||