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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 934 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCGTTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTCACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTGGGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGATTAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCGCGACCACCCCGAATGCAAAAACATCA-CCTTTTCAG-CAAACGACCTCTCATTGNATACTCGGGTGCCAGATAGCCAAATGTGCC-GCAATCGCTG-GCTGA-ATGAAGCTTCTTCTCAT-ATATAGCTTGGGGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGCTGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGCCTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT]
[-] EMBL CB001033 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCGTTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTCACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCT ]
[+] EMBL CA752594 [ CTAAACTTTTCAAACATTGGAACCCCCCGATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTGGGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGATTAACCTTGCTTTCCTCAAGGGAG TG CGATGTTTGACCGACCAGCAACAGTCTCGAGCGCGACCACCCCGAATGCAAAAACATCA CCTTTTCAG CAAACGACCTCTCATTGNATACTCGGGTGCCAGATAGCCAAATGTGCC GCAATCGCTG GCTGA ATGAAGCTTCTTCTCAT ATATAGCTTGGGGAGTCCAAAGTCCGAT ]
[+] EMBL CB632092 [ AACTTTTCAAACATTGGAA CTCTTTATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTCCCTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTGGGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGATTAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCGCGACCACCCCGAATGCAAAAACATCAGCCTTTTCAGTCAAACGACCTCTCATTGCATACTCGGGTGCCAGATAGCCAAATGTGCCGGCAATCGCTGTGCTGATATGAGTCTTCTTCTCATCATATAGCTTGGCGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGCTGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGCCTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT]
[-] EMBL C22666 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTC TTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGNTGACTCTCAAGGNTTCATCCCTGCTGAANTCTTTGATTCTTGGGNCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGNTCCATGCCCATCCAAAGAGATTAACCTTGNTTTCCTCAAGGGAGTTGTCGATGTT ]
consensusID : consensus_8334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTATNATNAACNTTGAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGGA]
[-] EMBL AU033019 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTATNATNAACNTTGAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8334#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCG 60
consensus_8334#1 ------------------------------------------------------------
consensus_8334#0 TTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTC 120
consensus_8334#1 ------------------------------------------------------------
consensus_8334#0 ACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATAC 180
consensus_8334#1 ------------------------------------------------------------
consensus_8334#0 CACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTA 240
consensus_8334#1 -----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTA 49
** ** ***** *** * * ***** * * *** ** ***
consensus_8334#0 TTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCC 300
consensus_8334#1 TNATNAACNTTGAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTT-GTGCC 108
* ** *** ***************** ***************** ********* *****
consensus_8334#0 CACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCC 360
consensus_8334#1 CACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCC 168
************************************************************
consensus_8334#0 TGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTC 420
consensus_8334#1 TGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTC 228
********************************************************* **
consensus_8334#0 CGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGC 480
consensus_8334#1 CGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGC 288
************************************************************
consensus_8334#0 ACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTG 540
consensus_8334#1 ACATGAGTGCAACATGGGA----------------------------------------- 307
*****************
consensus_8334#0 GGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGAT 600
consensus_8334#1 ------------------------------------------------------------
consensus_8334#0 TAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCG 660
consensus_8334#1 ------------------------------------------------------------
consensus_8334#0 CGACCACCCCGAATGCAAAAACATCACCTTTTCAGCAAACGACCTCTCATTGNATACTCG 720
consensus_8334#1 ------------------------------------------------------------
consensus_8334#0 GGTGCCAGATAGCCAAATGTGCCGCAATCGCTGGCTGAATGAAGCTTCTTCTCATATATA 780
consensus_8334#1 ------------------------------------------------------------
consensus_8334#0 GCTTGGGGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGC 840
consensus_8334#1 ------------------------------------------------------------
consensus_8334#0 TGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGC 900
consensus_8334#1 ------------------------------------------------------------
consensus_8334#0 CTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT 934
consensus_8334#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||