These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 592 fasta sequence [AGGCCCGCCTCCGGATGACGGTGAGGGGTGAGGACCGGGGCCCGGGGCGCTGCACGTCGCCTCCGCCGCGGGATGCT-CCGGTGTGCTCGTACCTGGTCGAGGAGCTCCAGGTGGACGTCGACGCCGCCGACGATTCAGGCGATACACCTCTGGCTTATGCAGTTCGTGGTCGTTCCATCGATGGTGTGAAGTATCTTCTTGACCATGGTTCCAATCCAGATAAGCCTGATAATAAAGGATATACACCTCTCCATGTGGCAGCTATTAAAGGTCCACTTATATG-CACATTGAATACATA-TCTA-TTATCATAT-GCATGCAGG--A-C-CTGC--TTT--AAGA-G-TTTTGTTT-CTATACCGGAGGGTTGTAGATAATGAAATTTGCAACAGATTGTGAGATATCTTGCTGGACAAGAACCAGTTGTTTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACA-TTTCATGGATAGGACAGTG-TTCATT--CAACCGTG-CAGAGCTA-CCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGT-CAGTG-TTG---TTTG-AAATT-AAAAAGGCC-ATACTTATACTATGATGCTATGTATTGTAAAAAA] [+] EMBL BI803321 [AGGCCCGCCTCCGGATGACGGTGAGGGGTGAGGACCGGGGCCCGGGGCGCTGCACGTCGCCTCCGCCGCGGGATGCT CCGGTGTGCTCGTACCTGGTCGAGGAGCTCCAGGTGGACGTCGACGCCGCCGACGATTCAGGCGATACACCTCTGGCTTATGCAGTTCGTGGTCGTTCCATCGATGGTGTGAAGTATCTTCTTGACCATGGTTCCAATCCAGATAAGCCTGATAATAAAGGATATACACCTCTCCATGTGGCAGCTATTAAAGGTCCACTTATATG CACATTGAATACATA TCTA TTATCATAT GCATGCAGG A C CTGC TTT AAGA G TTTTGTTT CTATACCGGAGGGTTGTAGATAATGAAATTTGCAACAGATTGTGAGATATCTTGCTGGACAAGAACCAGTTG CTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACA TTTCATGGATAGGACAGTG TTCATT CAACCGTG CAGAGCTA CCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGT CAGTG TTG TTTG AAATT AAAAAGGCC ATACTTATACTATGATGCTATGTATTGTAAAAAA] [+] EMBL BI804472 [ CGGGATGCTCCCGGTGTGCTCGTACCTGTTCGAGGAGCTCCAGGTGGACGTCGACGCCGCCGACGATTCAGGCGATACACCTCTGGCTTATCCAGTTCGTGGTCGTTCCATCGATGGTGTGAAGTATCTTCTTGACCATGGTTCC ATCCAGATAAGCCTGATAATAAAGGATATACACCTCTCCATGTGGCAGCTATTAAAGGTCCACTTATATGCCACATTGAATACATACTCTACTTATCATAT GCATGCAGGACA C CTGCCTTTTAAAAGACGTTTTTGTTTCCTATACCGGAGGGTTGTAGATAATGAAATTTGC ACAGATTGTGAGATATCTTGCTGGACAAGAA CAGTTGTTTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACACTTTCATGGATAGGACAGTGCTTCATT CAACCGTG CAGAGCTA CCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGT CAGTG TTG TTTG AAATTAAAAAAGGCCAATACTTATACTATGATGCTATGTATTGTAAAAAA] [+] EMBL BI803071 [ CGATACACCTCTGGCTTATGCAGTTCGTGGTCGTTCCATCGATGGTGTGAAGTATCTTCTTGACCATGGTTCCAATCCAGATAAGCCTGATAATAAAGGATATACACCTCTCCATGTGGCAGCTATTAAAGGTCCACTTATATG CACATTGAATACATA TCTA TTATCATAT GCATGCAGG A CACTGC TTT AAGA G TTTTGTTT CTATACCGGAGGGTTGTAGATAATGAAATTTGCAACAGATTGTGAGATATCTTGCTGGACAAGAACAAGTTGTTTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACA TTTCATGGATAGGACAGTG TTCATTTCCAACCGTGCCAGAGCTACCCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGT CAGTG TTG TTTG AAATT AAAAA GCC CCACTTATACTATGATGCTATGTATTGTAAAAAA] [+] EMBL BI803161 [ CAC TTGAATACATA TCTA TTATCATATGGCATGCAGG ACC CTGC TTT AAGA G TTTTGTTT CTATACCGGAGGGTTGTAGATAATGAAATTTGCCACAGATTGTGAGATATCTTGCTGGACAAGAA CAGTTGTTTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACA TTTCATGGATAGGACAGTG TTCATT CAACCGTG CAGAGCTA CCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCCAGTGTTTGTTTTTTGAAAATT TAAAAAGCC ATCCTTATACTATGATGCTATGTATTGTAAAAAA] consensusID : consensus_8337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [GGATGACCCCCTGCTGGGCCTTTATCCAAGTTCGTGTTCGTTTCCCATCGAGTGGGTGTGAAGTATCTTTCTTTGCCCATGGTTCCCAAGTCCAAGATAACGCCTGATAATAAAGGATATCACCACCCTCTGTCCCATGTGCCCAGCTATTAAAGGTCCACTTATATGGCACATGTGAATACATGATGCTGATTATGCATAATGGCATGGCCAGGACCCTGGCTTTAAGAGTTTTGTTTGCTATACCCGGAGGTTTGTAGATGAATGGAAATGTTGCCAACAGATTGGTGAGATATCTTGGCTGGACAAGAACACAGTTGGTTTAATTGTGGTCATTCCAAGTCTGAAAATATGGTTATCAACATGTTCCATGGGATAGGACCAGTGTTCATTCAACCGTGGCAGAGCTACCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCAGTGTTGTTTGAAATTAAAAAGCCATACTTATACTATGGATGCTATGTATTGTAAAAAA] [+] EMBL BI804146 [GGATGACCCCCTGCTGGGCCTTTATCCAAGTTCGTGTTCGTTTCCCATCGAGTGGGTGTGAAGTATCTTTCTTTGCCCATGGTTCCCAAGTCCAAGATAACGCCTGATAATAAAGGATATCACCACCCTCTGTCCCATGTGCCCAGCTATTAAAGGTCCACTTATATGGCACATGTGAATACATGATGCTGATTATGCATAATGGCATGGCCAGGACCCTGGCTTTAAGAGTTTTGTTTGCTATACCCGGAGGTTTGTAGATGAATGGAAATGTTGCCAACAGATTGGTGAGATATCTTGGCTGGACAAGAACACAGTTGGTTTAATTGTGGTCATTCCAAGTCTGAAAATATGGTTATCAACATGTTCCATGGGATAGGACCAGTGTTCATTCAACCGTGGCAGAGCTACCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCAGTGTTGTTTGAAATTAAAAAGCCATACTTATACTATGGATGCTATGTATTGTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8337#0 AGGCCCGCCTCCGGATGACGGTGAGGGGTGAGGACCGGGGCCCGGGGCGCTGCACGTCGC 60 consensus_8337#1 ------------------------------------------------------------ consensus_8337#0 CTCCGCCGCGGGATGCTCCGGTGTGCTCGTACCTGGTCGAGGAGCTCCAGGTGGACGTCG 120 consensus_8337#1 ------------------------------------------------------------ consensus_8337#0 ACGCCGCCGACGATTCAGGCGATACACCTCTGG---CTTATGCA-GTTCGTGGTCGTT-- 174 consensus_8337#1 ----------------GGATGACCCCCTGCTGGGCCTTTATCCAAGTTCGTGTTCGTTTC 44 * ** * * **** **** ** ******* ***** consensus_8337#0 CCATCGAT--GGTGTGAAGTATCTTC--TTGACCATGGTTCC--AATCCA-GATAA-GCC 226 consensus_8337#1 CCATCGAGTGGGTGTGAAGTATCTTTCTTTGCCCATGGTTCCCAAGTCCAAGATAACGCC 104 ******* *************** *** ********** * **** ***** *** consensus_8337#0 TGATAATAAAGGATAT-ACACCTCTC-----CATGTGGC-AGCTATTAAAGGTCCACTTA 279 consensus_8337#1 TGATAATAAAGGATATCACCACCCTCTGTCCCATGTGCCCAGCTATTAAAGGTCCACTTA 164 **************** ** * *** ****** * ******************** consensus_8337#0 TATG-CACAT-TGAATACATATCTATTATCATAT------GCATG--CAGGACCT--GCT 327 consensus_8337#1 TATGGCACATGTGAATACATGATGCTGATTATGCATAATGGCATGGCCAGGACCCTGGCT 224 **** ***** ********* * ** ** ***** ******* *** consensus_8337#0 TTAAGAGTTTTGTTT-CTATACC-GGAGGGTTGTAGAT-AATGAAA---TTTGCAACAGA 381 consensus_8337#1 TTAAGAGTTTTGTTTGCTATACCCGGAGGTTTGTAGATGAATGGAAATGTTGCCAACAGA 284 *************** ******* ***** ******** **** ** ** ******* consensus_8337#0 TTG-TGAGATATCTTG-CTGGACAAGAAC-CAGTTG-TTTAATTGTGGTCATTC-AAGTC 436 consensus_8337#1 TTGGTGAGATATCTTGGCTGGACAAGAACACAGTTGGTTTAATTGTGGTCATTCCAAGTC 344 *** ************ ************ ****** ***************** ***** consensus_8337#0 TGAAAATATG-TTATCAACAT--TTCATGG-ATAGGAC-AGTGTTCATTCAACCGTG-CA 490 consensus_8337#1 TGAAAATATGGTTATCAACATGTTCCATGGGATAGGACCAGTGTTCATTCAACCGTGGCA 404 ********** ********** * ***** ******* ****************** ** consensus_8337#0 GAGCTACCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCAGTGTTGTTTGAAATTA 550 consensus_8337#1 GAGCTACCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCAGTGTTGTTTGAAATTA 464 ************************************************************ consensus_8337#0 AAAAGGCCATACTTATACTATG-ATGCTATGTATTGTAAAAAA 592 consensus_8337#1 AAAAG-CCATACTTATACTATGGATGCTATGTATTGTAAAAAA 506 ***** **************** ******************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||