These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 532 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTNNTAAAACTTCAAACTGACCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGC--C-AGGTGTCCGGTGGGTGGGGATGGAGGAAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATCCGGCGGCTAACCCCGTCCGTGGTGGAAGTNAAGGAAGCATCCGTNGCNTTTGCGCCCGGAAGCCGGGGGAAGCNTCCGCNGAAGTTGAAGCATANGTTGCGGCCGCTACCCCGGCNGAAGCNGANGCCCGCTTGAAGCTCCCGCNNAAGCGCGNAAGTTGNAACNCNACNCNTCNGGCTCGCTCTNCCNAAT] [-] EMBL CA755078 [TTTTTTTTTTTTTTTTTTTTTTNNTAAAACTTCAAACTGACCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGC G AGGTGTCCGGTGGGTGGGGATGG ] [-] EMBL AU172816 [ TTTTTTTTTTTT TAAAACTTCAAACTGACCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGCTGCGAGGTGTCCGGTGGGTGGGGATGGAGGAAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGT ] [+] EMBL BE229807 [ ACTTCAAACTGACCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCNTCCTCCATGATGAACCAGCTACAGGANATGCAGGTGGANGCGCCGCGCTCGCAGCCACCGGGGAAGCAGCGGAAGGTCTCNAAAAAGCACTCCACTGC C AAGTGTCCGGTGGGTNGGGATGGAAGAA GCGGTATCTGCGCATCCCCGGCCTCNTGGAAGTCGGATCCGGCGGCTAACCCCGTCCGTGGTGGAAGTNAAGGAAGCATCCGTNGCNTTTGCGCCCGGAAGCCGGGGGAAGCNTCCGCNGAAGTTGAAGCATANGTTGCGGCCGCTACCCCGGCNGAAGCNGANGCCCGCTTGAAGCTCCCGCNNAAGCGCGNAAGTTGNAACNCNACNCNTCNGGCTCGCTCTNCCNAAT] consensusID : consensus_8341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [CATCTCATATAGNATNATTCACAAAGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGCTGCGAGGTGTCCGGTGGGTGGGGATGGAGGAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATNCCGCGCCGCCGCGCCTCCCCTCCTGCCCTTGCCGGATCTGGCGGCCGGCCCGGCGCCACCGCCGCCGCCCCTGCCGGCCCGGCGCCACCACGCCTCCACTGCTGCCCCTGCACAGA] [-] EMBL AU166070 [CATCTCATATAGNATNATTCACAAAGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGCTGCGAGGTGTCCGGTGGGTGGGGATGGAGGAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATNCCGCGCCGCCGCGCCTCCCCTCCTGCCCTTGCCGGATCTGGCGGCCGGCCCGGCGCCACCGCCGCCGCCCCTGCCGGCCCGGCGCCACCACGCCTCCACTGCTGCCCCTGCACAGA] consensusID : consensus_8341#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [CCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGNTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCANTCCACTGCTCGTGCCGATTCGGCACGAGCTCGTGCCGCTCGTGCCGAAT] [-] EMBL BE228353 [CCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGNTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCANTCCACTGCTCGTGCCGATTCGGCACGAGCTCGTGCCGCTCGTGCCGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8341#0 TTTTTTTTTTTTTTTTTTTTTTNNTAAAACTTCAAACTGACCAACAGTTCATTATCCTCC 60 consensus_8341#2 ----------------------------------------CCAACAGTTCATTATCCTCC 20 consensus_8341#1 ------------------------------------------------------------ consensus_8341#0 ATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCA 120 consensus_8341#2 ATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCA 80 consensus_8341#1 -------------CATCTCATATAGNA-TNATTCACAAAGGG-ATGGCAAGAATTTATCA 45 ************ * * ************ ***************** consensus_8341#0 TACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCA 180 consensus_8341#2 TACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCA 140 consensus_8341#1 TACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCA 105 ************************************************************ consensus_8341#0 TGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGC 240 consensus_8341#2 TGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGNTCGCAGCCACCGGGGAGGC 200 consensus_8341#1 TGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGC 165 **************************************** ******************* consensus_8341#0 AGCGGAGGGTCTCGAAGAGGCACTCCACTGCC---AGGTGTCCGGTGGGTGGGGATGGAG 297 consensus_8341#2 AGCGGAGGGTCTCGAAGAGGCANTCCACTGCT---CG-TGCCGATTCGGCACGAGCTCGT 256 consensus_8341#1 AGCGGAGGGTCTCGAAGAGGCACTCCACTGCTGCGAGGTGTCCGGTGGGTGGGGATGGAG 225 ********************** ******** * ** * * ** * consensus_8341#0 GAAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATCCGGCGGC-TAACCCCGT 356 consensus_8341#2 GCCGCTCGTGCCGAAT-------------------------------------------- 272 consensus_8341#1 GA-GGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATNCCGCGCCGCCGCGCCTC 284 * * ** * consensus_8341#0 CCGTGGTGGAAGTNAAGGAAGCATCCGTNGCNTTTGCGCC-CGGAAGCCGGGGGAAGCNT 415 consensus_8341#2 ------------------------------------------------------------ consensus_8341#1 CCCTCCTGCCCTTGCCGGATCTGGCGGCCGGCCCGGCGCCACCGCCGCCGCCCCTGCCGG 344 consensus_8341#0 CCGCNGAAGTTGAAGCATANGTTGCGGCCGCTACCCCGGCNGAAGCNGANGCCCGCTTGA 475 consensus_8341#2 ------------------------------------------------------------ consensus_8341#1 CCCGGCGCCACCACGCCTCCACTGCTGCCCCTGCACAGA--------------------- 383 consensus_8341#0 AGCTCCCGCNNAAGCGCGNAAGTTGNAACNCNACNCNTCNGGCTCGCTCTNCCNAAT 532 consensus_8341#2 --------------------------------------------------------- consensus_8341#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||