|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1432 fasta sequence
[AAAACTAAAGGAAAACAAATTCCTCTACATTCAGGTTACCTCATTTCTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAGCTTCACCCCCGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAAAGGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTCACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAAATCCTTTCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAAAACTGTGTATCATGTACAAGTGGATTGCTTGCTCCAACTGGTGGAGATCCCGTAAAGTATGGAGGAAAAGCCTGTAAATTGCATTTCTAGCTTAATTTGGAAGCACATTTGAGCAACAGCCAAAAAATATGGGGTAAAGAGAAAAGAGATAAGCTAACCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGAACAGCAAAATAAATCCCCGATGCTATGCAGTTAAAATCAAAATACCCGAACTTATCTGAATATGAAAAATTCCAGATGAGAAGTGAGTGTGTCAGTAGAGTCAAATTGAACATGCAGAACACAAACGGCAATGTACTCAGCCAAAGCAAGATGATTCAAGCAATCCAACGCAGCAATAGACAGTTAGACACTATGATGAGATGAATTTGATAACATGTGATCTATTAGAATATTGAGGGTGTGTTCGCTACCAGGGGATGGGAATGTGCACAGTGCGCACGGAAAACAGGACAGTTTATTAGCACGTGATTAATTAAGTACTCCCTCCGTTTTGTAATGTATGACGCTGTTGACTTTTCGACCAGCGTTTGACCATTCGTTTTATTCAAAATTTTTGTGCAAATATAAAAATATTTATATCATGCTTAAAGAATACTTGATAACGAATCAAGTCATAATAAAATAAATGATAATTACATAAATTTCTTGAATAAGACGAATGATCAAACGTTGGACAAAAAGTCAATGGCGTCATACATTAAAATATGGAGGTAGTATTTGCTTTTTTTTTCAAAAATAGATTAATTTGATTTTTTAAGCAACTTTCATATAGAAAATTTTTTTAAAAAAAACACACTGTTTAGTAGTTTGAAAAGCGTGCACGCGGAAAACGAGGGAGAGGGGTTGGGAAGAGAGGCATCCGAACACACCCTGAGGGTATTTGACAATGTTTGTTTATACCACAATTGTCTTGTGGACAAAGAAATTTAGATTTAGAATCATATTAAAA]
[+] EMBL CB627263 [AAAACTAAAGGAAAACAAATTCCTCTACATTCAGGTTACCTCATTTCTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAGCTTCACCCCCGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAAAGGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTCACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAAATCCTTTCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAAAACTGTGTATCATGTACAAGTGGATTGCTTGCTCCAACTGGTGGAGATCCCGTAAAGTATGGAGGAAAAGCCTGTAAATTGCATTTCTAGCTTAATTTGGAAGCACATTTGAGCAACAGCCAAAAAATATGGGGTAAAGAGAAAAGAGATAAGCTAACCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGAACAGCAAAATAAATCCCCGATGCTATGCAGTTAAAATCAAAATACCCGAACTTATCTGAATATGAAAAATTCCAGATGAGAA ]
[-] EMBL CB627262 [ GAACAGCAAAATAAATCACCGATGCTATGCAGTTAAAATCAAAATACCCGAACTTATCTGAATATGAAAAATTCCAGATGAGAAGTGAGTGTGTCAGTAGAGTCAAATTGAACATGCAGAACACAAACGGCAATGTACTCAGCCAAAGCAAGATGATTCAAGCAATCCAACGCAGCAATAGACAGTTAGACACTATGATGAGATGAATTTGATAACATGTGATCTATTAGAATATTGAGGGTGTGTTCGCTACCAGGGGATGGGAATGTGCACAGTGCGCACGGAAAACAGGACAGTTTATTAGCACGTGATTAATTAAGTACTCCCTCCGTTTTGTAATGTATGACGCTGTTGACTTTTCGACCAGCGTTTGACCATTCGTTTTATTCAAAATTTTTGTGCAAATATAAAAATATTTATATCATGCTTAAAGAATACTTGATAACGAATCAAGTCATAATAAAATAAATGATAATTACATAAATTTCTTGAATAAGACGAATGATCAAACGTTGGACAAAAAGTCAATGGCGTCATACATTAAAATATGGAGGTAGTATTTGCTTTTTTTTTCAAAAATAGATTAATTTGATTTTTTAAGCAACTTTCATATAGAAAATTTTTTTAAAAAAAACACACTGTTTAGTAGTTTGAAAAGCGTGCACGCGGAAAACGAGGGAGAGGGGTTGGGAAGAGAGGCATCCGAACACACCCTGAGGGTATTTGACAATGTTTGTTTATACCACAATTGTCTTGTGGACAAAGAAATTTAGATTTAGAATCATATTAAAA]
consensusID : consensus_8342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 836 fasta sequence
[TCTTTTTATTTAAAGGAAAACAAATTCTCTTTCATTCAGGTTCCCTCATTTCTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAACTTCACAGACGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAGAGGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTAACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAGATCCTTCCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCCCGTAAAGTATGGAGGAGAAGCCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGCCACTCTTGCGTGGTACTGGACATCTTATCGCTCCAGCCCTGCTTGTAGTGCTTTGGCAGGATTTCATCATTGTTTCTGTTCTCAGCTTCTCTAGCTCCCTCATTTCCTCAATAAAGCCTGATGAAGGACTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGATCAGCAAAGTCCCTGCACAATCAATAATTCCTCAAAATGTAGAATAAATCAAGAGTAAAGAAATACTTTTGAGTCTAATTGCAGCATT]
[+] EMBL CB668496 [TCTTTTTATTTAAAGGAAAACAAATTCTCTTTCATTCAGGTTCCCTCATTTCTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAACTTCACAGACGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAGAGGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTAACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAGATCCTTCCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCCCGTAAAGTATGGAGGAGAAGCCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGCCACTCTTGCGTGGTACTGGACATCTTATCGCTCCAGCCCTGCTTGTAGTGCTTTGGCAGGATTTCATCATTGTTTCTGTTCTCAGCTTCTCTAGCTCCCTCATTTCCTCAATAAAGCCTGATGAAGGACTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGATCAGCAAAGTCCCTGCACAATCAATAATTCCTCAAAATGTAGAATAAATCAAGAGTAAAGAAATACTTTTGAGTCTAATTGCAGCATT]
[-] EMBL AA751614 [ ACAAATTTTNTTTCATTCAGGTNACNTCATTTNTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAGNTTCACAGCCGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGNTTNTAGAGGGTGATAANTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTCACCAAGCATGTCCTNTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAGATCCTTTCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGc ]
consensusID : consensus_8342#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[GCATGTCCTNTGAGGTTTGGTTGCCAGCGGTCATGAAGCTCATAAAAGTAGCTTCAAGCCTTGTAATAGATCCTTCCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCCCGTAAAGTATGGAGGAGAAGCCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGCCACTCTTGCGTGGTACTGGACATCTTATCGCTCCAGCCCTGCTTGTAGTGCTTTGGCAGGATTTCATCATTGTTTCTGTTCTCAGCTTTTCTAGCTCCCTCATTTCCTCAATAAAGCCTGATGAAGGACTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGATCAGCAAAGTCCCTGAACCGCGGGAATCGAGAGGAGGGCGGAGAAAGGGGAGGGTGGGGAGGAGGGGAGAAGAGACACCGAGGCGCACAGCCCCCCCGCCTCCGGCTCGCCGCGCTCCCCGCTCGCTCGTCCGTTCGTCCGCTCGCTCGCGAGGCGAGAGAGGGGAGGAGAGG]
[-] EMBL CA756157 [GCATGTCCTNTGAGGTTTGGTTGCCAGCGGTCATGAAGCTCATAAAAGTAGCTTCAAGCCTTGTAATAGATCCTTCCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCCCGTAAAGTATGGAGGAGAAGCCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGCCACTCTTGCGTGGTACTGGACATCTTATCGCTCCAGCCCTGCTTGTAGTGCTTTGGCAGGATTTCATCATTGTTTCTGTTCTCAGCTTTTCTAGCTCCCTCATTTCCTCAATAAAGCCTGATGAAGGACTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGATCAGCAAAGTCCCTGAACCGCGGGAATCGAGAGGAGGGCGGAGAAAGGGGAGGGTGGGGAGGAGGGGAGAAGAGACACCGAGGCGCACAGCCCCCCCGCCTCCGGCTCGCCGCGCTCCCCGCTCGCTCGTCCGTTCGTCCGCTCGCTCGCGAGGCGAGAGAGGGGAGGAGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8342#1 TCTTTTTATTTAAAGGAAAACAAATTCTCTTTCATTCAGGTTCCCTCATTTCTCAGCAAC 60
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 -----AAAACTAAAGGAAAACAAATTCCTCTACATTCAGGTTACCTCATTTCTCAGCAAC 55
consensus_8342#1 ATAGGTTTGACAGACTTTATTTGCCAAAACTAACTTCACAGACGACAAAACTGAACACAA 120
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 ATAGGTTTGACAGACTTTATTTGCCAAAACTAGCTTCACCCCCGACAAAACTGAACACAA 115
consensus_8342#1 AAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAGA 180
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 AAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAAA 175
consensus_8342#1 GGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAAC 240
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 GGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAAC 235
consensus_8342#1 TAATGTCAAAAGCCGGAATGTTAACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTC 300
consensus_8342#2 ----------------------------GCATGTCCTNTGAGGTTTGGTTGCCAGCGGTC 32
consensus_8342#0 TAATGTCAAAAGCCGGAATGTTCACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTC 295
********* ****** ***************
consensus_8342#1 ATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAGATCCTTCCCTCACACAGTAACG 360
consensus_8342#2 ATGAAGCTCATAAAAGTAGCTTCAAGCCTT-GTAATAGATCCTTCCCTCACACAGTAACG 91
consensus_8342#0 ATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAAATCCTTTCCTCACACAGTAACG 355
************** *************** ****** ****** ***************
consensus_8342#1 AACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTT 420
consensus_8342#2 AACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTT 151
consensus_8342#0 AACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTT 415
************************************************************
consensus_8342#1 CCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCC 480
consensus_8342#2 CCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCC 211
consensus_8342#0 CCATGCACAAAACTGTGTATCATGTACAAGTGGATTGCTTGCTCCAACTGGTGGAGATCC 475
********* ********************************** ***************
consensus_8342#1 CGTAAAGTATGGAGGAGAAGCCT--------TGCTCATAATGAAATCAGAAAGATCCTGT 532
consensus_8342#2 CGTAAAGTATGGAGGAGAAGCCT--------TGCTCATAATGAAATCAGAAAGATCCTGT 263
consensus_8342#0 CGTAAAGTATGGAGGAAAAGCCTGTAAATTGCATTTCTAGCTTAATTTGGAAGCACATTT 535
**************** ****** * ** *** * *** * * *
consensus_8342#1 G--------TTAAATCATACTCCTTATAT--------GACCTGCCACTCTTGCGTGGTAC 576
consensus_8342#2 G--------TTAAATCATACTCCTTATAT--------GACCTGCCACTCTTGCGTGGTAC 307
consensus_8342#0 GAGCAACAGCCAAAAAATATGGGGTAAAGAGAAAAGAGATAAGCTAACCTTGC-TCATAA 594
* *** *** ** * ** ** * ***** * **
consensus_8342#1 TGGACATCTTATCGCTCCAGCCCTGC-TTGTAGTGCTTTGGCAGGATTTCATCATTGTTT 635
consensus_8342#2 TGGACATCTTATCGCTCCAGCCCTGC-TTGTAGTGCTTTGGCAGGATTTCATCATTGTTT 366
consensus_8342#0 TGAA-ATCAGAAAGATCCTGTGTTAAATCATACTCCTT--ATATGACCTGAACAGCAAAA 651
** * *** * * *** * * * ** * *** * ** * * **
consensus_8342#1 CTGTTCTCAGCTTCTCT--AGCTC---CCTCATTTCCTCAATAAAGCCTGAT--GAAGGA 688
consensus_8342#2 CTGTTCTCAGCTTTTCT--AGCTC---CCTCATTTCCTCAATAAAGCCTGAT--GAAGGA 419
consensus_8342#0 TAAATCCCCGATGCTATGCAGTTAAAATCAAAATACCCGAACTTATCTGAATATGAAAAA 711
** * * * * * ** * * * * ** ** * * ** *** *
consensus_8342#1 CTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGA 748
consensus_8342#2 CTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGA 479
consensus_8342#0 TTCCAGATGAGAAGTGAGTGTGTCA-GTAGAGTCAAATTGAACATGCAGAACACAAACGG 770
** * ** ** *** ** * * * * ** * * ** * * *
consensus_8342#1 TCAGCAAAGTCCCTGCACAATCAATAATTCCTCAAAATGTAGAATAAATCAAGAGTAAAG 808
consensus_8342#2 TCAGCAAAGTCCCTGAACCG-CGGGAATCGAGAGGAGGGCGGAGAAAGGGGAGGGTGGGG 538
consensus_8342#0 CAATGTACTCAGCCAAAGCAAGATGATTCAAGCAATCCAACGCAGCAATAGACAGTTAGA 830
* * * * * * * * * **
consensus_8342#1 AAATACTTTTGAGTCTAATTGC-AGCATT------------------------------- 836
consensus_8342#2 AGGAGGGGAGAAGAGACACCGA-GGCGCACAGCCCCCCCGCCTCCGGCTCGCCGCGCTCC 597
consensus_8342#0 CACTATGATGAGATGAATTTGATAACATGTGATCTATTAGAATATTGAGGGT-GTGTTCG 889
* *
consensus_8342#1 ------------------------------------------------------------
consensus_8342#2 CCGCTCGCTCGTCCGTTCGTCCGCT---CGCTCGCGAGGCGAGAGAGGGGAGGAGAGG-- 652
consensus_8342#0 CTACCAGGGGATGGGAATGTGCACAGTGCGCACGGAAAACAGGACAGTTTATTAGCACGT 949
consensus_8342#1 ------------------------------------------------------------
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 GATTAATTAAGTACTCCCTCCGTTTTGTAATGTATGACGCTGTTGACTTTTCGACCAGCG 1009
consensus_8342#1 ------------------------------------------------------------
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 TTTGACCATTCGTTTTATTCAAAATTTTTGTGCAAATATAAAAATATTTATATCATGCTT 1069
consensus_8342#1 ------------------------------------------------------------
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 AAAGAATACTTGATAACGAATCAAGTCATAATAAAATAAATGATAATTACATAAATTTCT 1129
consensus_8342#1 ------------------------------------------------------------
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 TGAATAAGACGAATGATCAAACGTTGGACAAAAAGTCAATGGCGTCATACATTAAAATAT 1189
consensus_8342#1 ------------------------------------------------------------
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 GGAGGTAGTATTTGCTTTTTTTTTCAAAAATAGATTAATTTGATTTTTTAAGCAACTTTC 1249
consensus_8342#1 ------------------------------------------------------------
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 ATATAGAAAATTTTTTTAAAAAAAACACACTGTTTAGTAGTTTGAAAAGCGTGCACGCGG 1309
consensus_8342#1 ------------------------------------------------------------
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 AAAACGAGGGAGAGGGGTTGGGAAGAGAGGCATCCGAACACACCCTGAGGGTATTTGACA 1369
consensus_8342#1 ------------------------------------------------------------
consensus_8342#2 ------------------------------------------------------------
consensus_8342#0 ATGTTTGTTTATACCACAATTGTCTTGTGGACAAAGAAATTTAGATTTAGAATCATATTA 1429
consensus_8342#1 ---
consensus_8342#2 ---
consensus_8342#0 AAA 1432
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||