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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1086 fasta sequence
[ACGCCCCCGCCATGGCTCTCCCCACCACCTCCCCCCTCGCCGCGGCCGCAGCGAGGCCCTGCGCGTTCCCGACGCCGTGGAGATGTCGCTCGCCCCCTCTTCGCCGCCTCCCGCACGTCTCCTGCCAGGCGAACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTCGGCGGCGGCGGCGGCGGCGGCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGCGCTCGCGGCGGCGATTGTGTCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGCGGAGCAGCGTGGGGAGTTCGGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAAGAAGGCCGTCCATGTTAATGAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAGGGAGTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCCGTATATATATGTATATCAAAGTGTTGCCGAATTCAAAACCTTTAAAGA]
[+] EMBL AK068423 [ACGCCCCCGCCATGGCTCTCCCCACCACCTCCCCCCTCGCCGCGGCCGCAGCGAGGCCCTGCGCGTTCCCGACGCCGTGGAGATGTCGCTCGCCCCCTCTTCGCCGCCTCCCGCACGTCTCCTGCCAGGCGAACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTCGGCGGCGGCGGCGGCGGCGGCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGCGCTCGCGGCGGCGATTGTGTCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGCGGAGCAGCGTGGGGAGTTCGGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAAGAAGGCCGTCCATGTTAATGAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAGGGAGTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCCGTATATATATGTATATCAAAGTGT ]
[+] EMBL CB683185 [ CAGGCGAACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTCGGCGGCGGCGGCGGCGGCGGCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGCGCTCGCGGCGGCGATTGTGTCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGCGGAGCAGCGTGGGGAGTTCGGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAAGAAGGCCGTCCATGTTAATGAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAGGGAGTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATATAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATAT ]
[-] EMBL CB683596 [ GTTTGGGTCGGCCGACCTCAAGAAGGCCGTCCATGTTAATGAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAGGGAGTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCCGTATAAAGATGTATATCAAAGTGTTGCCGAATTCAAAACCTTTAAAGA]
[-] EMBL OSS12335A [ GGTATGTGTGACGCNAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATNCAGAGAAATTGNTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCCGTATATATATGT ]
consensusID : consensus_8344#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence
[TAAGTGTCATGGAAGAGAAAACCGAATATTCAGACAAGAGAATCTTGACATGAACTTGACTATTATCTCCTGGCTGGTATGTCTCATGTCTTCGGGAAGGAAGTTCCATGTGCTCAACTGCTAACAACACAATCTTTAGCTTGAACAAACATTGCATAATCCTAATGTCCCGCATCTGTGACATATGAATTTGAAGTTGAGAACCGGTGCCATACTGTTTCAGCAGTGGTCAAAACTAATTTTGGATGATACATAAAAGAATCACCATATGATGCCATGTTGGGGTCTATCTTCAATGTTTTGCATGAGTTCTCTGATTCTCTTTTATACAGAAAACAAAAGATAATCCTGATAACTAATATTAGGCAAACTGGTATGTAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCAGGATATATATGTATA]
[-] EMBL CB680795 [TAAGTGTCATGGAAGAGAAAACCGAATATTCAGACAAGAGAATCTTGACATGAACTTGACTATTATCTCCTGGCTGGTATGTCTCATGTCTTCGGGAAGGAAGTTCCATGTGCTCAACTGCTAACAACACAATCTTTAGCTTGAACAAACATTGCATAATCCTAATGTCCCGCATCTGTGACATATGAATTTGAAGTTGAGAACCGGTGCCATACTGTTTCAGCAGTGGTCAAAACTAATTTTGGATGATACATAAAAGAATCACCATATGATGCCATGTTGGGGTCTATCTTCAATGTTTTGCATGAGTTCTCTGATTCTCTTTTATACAGAAAACAAAAGATAATCCTGATAACTAATATTAGGCAAACTGGTATGTAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCAGGATATATATGTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8344#0 ACGCCCCCGCCATGGCTCTCCCCACCACCTCCCCCCTCGCCGCGGCCGCAGCGAGGCCCT 60
consensus_8344#1 ------------------------------------------------------------
consensus_8344#0 GCGCGTTCCCGACGCCGTGGAGATGTCGCTCGCCCCCTCTTCGCCGCCTCCCGCACGTCT 120
consensus_8344#1 ------------------------------------------------------------
consensus_8344#0 CCTGCCAGGCGAACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTCGGCGGCGG 180
consensus_8344#1 ------------------------------------------------------------
consensus_8344#0 CGGCGGCGGCGGCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGCGCTCGCGG 240
consensus_8344#1 ------------------------------------------------------------
consensus_8344#0 CGGCGATTGTGTCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGCGGAGCAGC 300
consensus_8344#1 --------------TAAGTGTCATGGAAGAGAAAACCGAATA--TTCAGACAAGAGAATC 44
* * * * * * ** * *** *** * *
consensus_8344#0 GTGG---GGAGTTCGGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAAGAAGG 357
consensus_8344#1 TTGACATGAACTTGACTATTATCTC--CTGGCTGGTATGTCTCA--TGTCTTCGGGAAGG 100
** * * ** *** *** *** ** ** ** * * ** *****
consensus_8344#0 CCGT-CCATGTTAATGAGAACTTCAGGCGGGCAAACTTCA-CTGCTGCTGATATGAGGGA 415
consensus_8344#1 AAGTTCCATGTGCTCAACTGCT--AACAACACAATCTTTAGCTTGAACAAACATTGCATA 158
** ****** * ** * *** *** * ** * * ** *
consensus_8344#0 GTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAG-GCTGT--TGCTTA 472
consensus_8344#1 ATCCTAATGTCCCGCATCTGTGACATATGAATTTGAAGTTGAGAACCGGTGCCATACTGT 218
** * * * ** *** * **** ** * ** * **
consensus_8344#0 TAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGC---ATGGTGCT 529
consensus_8344#1 TTCAGCAGTGGTCA--AAACTAATTTTGGATGATACATAAAAGAATCACCATATGATGCC 276
* **** * * * **** ****** * * * *** * *** ***
consensus_8344#0 -CAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATC 588
consensus_8344#1 ATGTTGGGGTCTATCTT--CAATGTTTTGCATGAGTTCTCTGATTCT-----------CT 323
** * * *** **** * *** ** ** * *
consensus_8344#0 TTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGA 648
consensus_8344#1 TTTATACAGAAAACA--AAAGAT---AATCCTGATAA--CTAATATTAGGCAAACTGGTA 376
** * ** ** ** *** * * * * ** **** * ** *
consensus_8344#0 AACAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGA 708
consensus_8344#1 TGTAGGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGA 436
*********************************************************
consensus_8344#0 AAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTT 768
consensus_8344#1 AAAGCCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTT 496
************************************************************
consensus_8344#0 TGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTA 828
consensus_8344#1 TGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTA 556
************************************************************
consensus_8344#0 TGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATG 888
consensus_8344#1 TGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATG 616
************************************************************
consensus_8344#0 CTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAA 948
consensus_8344#1 CTGTATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAA 676
************************************************************
consensus_8344#0 TTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAG 1008
consensus_8344#1 TTGTTCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAG 736
************************************************************
consensus_8344#0 ACAAGTTATGTGTACTGAACGACTGATGCCGTATATATATGTATATCAAAGTGTTGCCGA 1068
consensus_8344#1 ACAAGTTATGTGTACTGAACGACTGATGCAGGATATATATGTATA--------------- 781
***************************** * *************
consensus_8344#0 ATTCAAAACCTTTAAAGA 1086
consensus_8344#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||