These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1775 fasta sequence [TTTTCTCGAAGCGCTTCCCTTCCCTTCGCTTCCCCGCACAATCTGCAAACGCGCCACCCGTCGCTCATAAACCCCTCTCCCTCTCTCTCTGGCCGACACATGGACCCCACCGCTCCCAACTCCGGCGACGCCAACGGCGGCGCGGCCGCCGACGCCACCGCCCCGTCCAACACCACCGTCACCCTCCCGCCGCTCACCCTCCGCGACGTGCCCCTGCTCCCGTCGGCGGCGGCGGCGACCGACACGATCCCCAACCCGATCTCCCGCCACCCCTACTTCCACCCGCCGGCCACCTTCTACATCTCCCCGGGTGACGTCTCCCTCCGCCACGCCTTCTTCGACCTCGCCTCCGCGTCGCCGTCCCCGCTCGTCGCCTACCGCCGCGCGGGGCCGCGCGCGGGGGTCGCCGTGGACCCCGCCCGCGCGCGCGCCGCGGTCGTCACCTGCGGGGGGCTCTGCCCGGGCCTCAACACCGTCCTCAGGGAGCTCGTCGTCGGCCTCCGGGAGCTCTACGGCGTCCGCGACGTCTTCGGCGTCGCCGCCGGCTACCGCGGGTTCTACGGCCCCGACGCCGACCACGCCCGCCTGGACCTGGCCGCCGTCGACGACTGGCACAAGAAGGGCGGCACCGTGCTCAAGACCACCCGTGGTGGCTTTGATCTCAACAAGATCGTTGACGGCATCGTCGCGCGCGGGTATACGCAGGTTTATGCAATTGGAGGGGATGGAACAATGAGAGGAGCTGTGGCCATCTTCAACGAGTTTAAGCGCCGTGGTTTGAACATTTCTATTACAGGGATCCCGAAAACTGTGGACAATGATATCGGCATCATAGACAGGTCATTTGGGTTCCAAACCGCAGTGGAGATTGCTCAGCAGGCAATCGACGCAGCACATGTCGAGGCTGTGAGCGCCGTGAATGGCATTGGACTTGTCAAACTTATGGGCAGGAGCACAGGCCACATTGCTCTTCATGCCACCCTGAGCAGCCGCGATGTTGACTGCTGTTTGATTCCTGAGGTTGATTTCTATCTTGAAGGAAAGGGGGGCCTGTTTGAGTTCTTGTATGAAAGGATAAAACAGAAGGGACATGCTGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGGACTGACGATCAAAAGCGGGAGCAGGAC-GAGTCCGGCAACATTGTGTTCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACACCCAAGCGAGTTGTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATGTTGCTGTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGACCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAATGTTGNTCTCCAAAAA] [+] EMBL AK071065 [TTTTCTCGAAGCGCTTCCCTTCCCTTCGCTTCCCCGCACAATCTGCAAACGCGCCACCCGTCGCTCATAAACCCCTCTCCCTCTCTCTCTGGCCGACACATGGACCCCACCGCTCCCAACTCCGGCGACGCCAACGGCGGCGCGGCCGCCGACGCCACCGCCCCGTCCAACACCACCGTCACCCTCCCGCCGCTCACCCTCCGCGACGTGCCCCTGCTCCCGTCGGCGGCGGCGGCGACCGACACGATCCCCAACCCGATCTCCCGCCACCCCTACTTCCACCCGCCGGCCACCTTCTACATCTCCCCGGGTGACGTCTCCCTCCGCCACGCCTTCTTCGACCTCGCCTCCGCGTCGCCGTCCCCGCTCGTCGCCTACCGCCGCGCGGGGCCGCGCGCGGGGGTCGCCGTGGACCCCGCCCGCGCGCGCGCCGCGGTCGTCACCTGCGGGGGGCTCTGCCCGGGCCTCAACACCGTCCTCAGGGAGCTCGTCGTCGGCCTCCGGGAGCTCTACGGCGTCCGCGACGTCTTCGGCGTCGCCGCCGGCTACCGCGGGTTCTACGGCCCCGACGCCGACCACGCCCGCCTGGACCTGGCCGCCGTCGACGACTGGCACAAGAAGGGCGGCACCGTGCTCAAGACCACCCGTGGTGGCTTTGATCTCAACAAGATCGTTGACGGCATCGTCGCGCGCGGGTATACGCAGGTTTATGCAATTGGAGGGGATGGAACAATGAGAGGAGCTGTGGCCATCTTCAACGAGTTTAAGCGCCGTGGTTTGAACATTTCTATTACAGGGATCCCGAAAACTGTGGACAATGATATCGGCATCATAGACAGGTCATTTGGGTTCCAAACCGCAGTGGAGATTGCTCAGCAGGCAATCGACGCAGCACATGTCGAGGCTGTGAGCGCCGTGAATGGCATTGGACTTGTCAAACTTATGGGCAGGAGCACAGGCCACATTGCTCTTCATGCCACCCTGAGCAGCCGCGATGTTGACTGCTGTTTGATTCCTGAGGTTGATTTCTATCTTGAAGGAAAGGGGGGCCTGTTTGAGTTCTTGTATGAAAGGATAAAACAGAAGGGACATGCTGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGGACTGACGATCAAAAGCGGGAGCAGGAC GAGTCCGGCAACATTGTGTTCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACACCCAAGCGAGTTGTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATGTTGCTGTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGACCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAAT ] [+] EMBL C28403 [ TGGACAATNATATCGGCATCATAGACAGGTCATTTGGGTTCCAAACCGCAGTGGAGATTGCTCAGCAGGCAATCGACGCAGCACATGTCGAGGCTGTGAGCGCCGTGAATGGCATTGGACTTGTCAAACTTATGGGCAGGAGCACAGGCCACATTGCTCTTCATGCCACCCTGAGCAGCCGCGATGTTGACTGCTGTTTGATTCCTGAGGTTGATTTCTATCTTGAAGGAAAGGGGGGCCTGTTTGAGTTCTTGTATGAAAGGATAAAACAGAAGGGACATNCTGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGGACTGACGATCAAAAGCGGGA CAGGACGGAGTC ] [+] EMBL CA767486 [ TGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGGACTGACGATCAAAAGCGGGAGCAGGAC GAGTCCGGCAACATTGTGTTCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACACCCAAGCGAGTTGTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATGTTGCTGTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCGAAATACTAAGACCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAATGTTGNTCT ] [+] EMBL AU165152 [ tCCGCTGGAAGATGTTGCTGTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGTATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGACCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAATGTTGTTCTCCAAAAA] consensusID : consensus_8348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [TGTTGCTGAAGGTNCTGGTCAGGAATTGATNCCAAGGACTGACGATCAAAAGCGGGANCAGGACGAGTCCGGCAACATTGTGTNCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACCCCCAAGCGAGTTNTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATNTTGCTNTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGNCCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU085824 [TGTTGCTGAAGGTNCTGGTCAGGAATTGATNCCAAGGACTGACGATCAAAAGCGGGANCAGGACGAGTCCGGCAACATTGTGTNCCTTGATGTGGGTCCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACCCCCAAGCGAGTTNTTCACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATNTTGCTNTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCATGAAGCCAAAATACTAAGNCCAAAAGTGCTGTTACTGGACATGGTTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGTTTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTTGTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAATAAATGAAGTGGCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8348#0 TTTTCTCGAAGCGCTTCCCTTCCCTTCGCTTCCCCGCACAATCTGCAAACGCGCCACCCG 60 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TCGCTCATAAACCCCTCTCCCTCTCTCTCTGGCCGACACATGGACCCCACCGCTCCCAAC 120 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TCCGGCGACGCCAACGGCGGCGCGGCCGCCGACGCCACCGCCCCGTCCAACACCACCGTC 180 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 ACCCTCCCGCCGCTCACCCTCCGCGACGTGCCCCTGCTCCCGTCGGCGGCGGCGGCGACC 240 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 GACACGATCCCCAACCCGATCTCCCGCCACCCCTACTTCCACCCGCCGGCCACCTTCTAC 300 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 ATCTCCCCGGGTGACGTCTCCCTCCGCCACGCCTTCTTCGACCTCGCCTCCGCGTCGCCG 360 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TCCCCGCTCGTCGCCTACCGCCGCGCGGGGCCGCGCGCGGGGGTCGCCGTGGACCCCGCC 420 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 CGCGCGCGCGCCGCGGTCGTCACCTGCGGGGGGCTCTGCCCGGGCCTCAACACCGTCCTC 480 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 AGGGAGCTCGTCGTCGGCCTCCGGGAGCTCTACGGCGTCCGCGACGTCTTCGGCGTCGCC 540 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 GCCGGCTACCGCGGGTTCTACGGCCCCGACGCCGACCACGCCCGCCTGGACCTGGCCGCC 600 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 GTCGACGACTGGCACAAGAAGGGCGGCACCGTGCTCAAGACCACCCGTGGTGGCTTTGAT 660 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 CTCAACAAGATCGTTGACGGCATCGTCGCGCGCGGGTATACGCAGGTTTATGCAATTGGA 720 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 GGGGATGGAACAATGAGAGGAGCTGTGGCCATCTTCAACGAGTTTAAGCGCCGTGGTTTG 780 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 AACATTTCTATTACAGGGATCCCGAAAACTGTGGACAATGATATCGGCATCATAGACAGG 840 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TCATTTGGGTTCCAAACCGCAGTGGAGATTGCTCAGCAGGCAATCGACGCAGCACATGTC 900 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 GAGGCTGTGAGCGCCGTGAATGGCATTGGACTTGTCAAACTTATGGGCAGGAGCACAGGC 960 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 CACATTGCTCTTCATGCCACCCTGAGCAGCCGCGATGTTGACTGCTGTTTGATTCCTGAG 1020 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 GTTGATTTCTATCTTGAAGGAAAGGGGGGCCTGTTTGAGTTCTTGTATGAAAGGATAAAA 1080 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 CAGAAGGGACATGCTGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGATTCCAAGG 1140 consensus_8348#1 -----------------------TGTTGCTGAAGGTNCTGGTCAGGAATTGATNCCAAGG 37 ************* **************** ****** consensus_8348#0 ACTGACGATCAAAAGCGGGAGCAGGACGAGTCCGGCAACATTGTGTTCCTTGATGTGGGT 1200 consensus_8348#1 ACTGACGATCAAAAGCGGGANCAGGACGAGTCCGGCAACATTGTGTNCCTTGATGTGGGT 97 ******************** ************************* ************* consensus_8348#0 CCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACACCCAAGCGAGTTGTTC 1260 consensus_8348#1 CCCTGGTTAAAATCTGAGCTGGGTAAATGGTGGAAGAGAGAACCCCCAAGCGAGTTNTTC 157 ******************************************* ************ *** consensus_8348#0 ACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGAC 1320 consensus_8348#1 ACTGTGAAGTATATCGATCCCACTTACATGATACGAGCTGTTCCAGCAAATGCCACTGAC 217 ************************************************************ consensus_8348#0 AATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACT 1380 consensus_8348#1 AATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTGGGTACACT 277 ************************************************************ consensus_8348#0 GGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATGTTGCT 1440 consensus_8348#1 GGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATNTTGCT 337 ****************************************************** ***** consensus_8348#0 GTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACA 1500 consensus_8348#1 NTGGCGAAGAACCCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACA 397 *********************************************************** consensus_8348#0 AACCAACCAGATTTCATGAAGCCAAAATACTAAGACCAAAAGTGCTGTTACTGGACATGG 1560 consensus_8348#1 AACCAACCAGATTTCATGAAGCCAAAATACTAAGNCCAAAAGTGCTGTTACTGGACATGG 457 ********************************** ************************* consensus_8348#0 TTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGT 1620 consensus_8348#1 TTGTATGACTTTTTCTCCCTGGAGCCTTGACACGTTAAGCTTGATTTCTTTCTATCCAGT 517 ************************************************************ consensus_8348#0 TTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTT 1680 consensus_8348#1 TTCTTCTCTTGTTATGCCGATCTATCTATAAGATGTTAGGTATTCTGATCTCCCTGGTTT 577 ************************************************************ consensus_8348#0 GTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAA 1740 consensus_8348#1 GTGTTTGTGTGCACTTGAAATCGTGTTAGCAGGTATTGCTGTAAATCTGTAGTACATAAA 637 ************************************************************ consensus_8348#0 TAAATGAAGTGGCAGGAAATGTTGNTCTCCAAAAA------------------ 1775 consensus_8348#1 TAAATGAAGTGGCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 690 ******************* ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||