These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1547 fasta sequence [CAAAAGCGTAGCGACACACGAGAAGCCACCAGCCAACGTAGTACGCGCCGAGAGCTGAGGCCATCCACGACACACGAACATGAGCACACTAGTAGACGCGCTGTGCGCTCCCTGCAGCGACACCGCGCTCATCTACGACACCTTCAACGCCTCCGCCGCCGCGAGCTTCCTCTTCGACAATGCCGCCGCCTTCTGCGACGCTGACATCCTCGGCGCCACGGCGACAGGGGAGAAGGAGGCGACGTCGTCGGCCGCGGCCGCGGCCGCGGAAGCCGCCCCGCCGAGGAAGAAGCGGCGGCGGCGCGCGAAGAGCTGCAAGTCGCGGGAGGAGACGGAGACCCAGCGGATGACGCACATCGCCGTGGAGCGCAACCGCCGGCGCCAGATGAACGAGTACCTCGCCATCCTCCGGTCGCTCATGCCGGAGCCCTACGTCCAGAGGGGCGACCAGGCGTCCATTGTGGGAGGCGCAATCGAGTTCGTGAAGGAGCTCGAGCAGCAGCTGCAGTCGCTTGAGGCGCAGAAGCGAACGCTGCTCCCTCACCACAAGGCGAGATGCGACGACGCAACGCCGATGCATAACGCCAGCGGCAGCAACGTCGGGGCCGGCGGCTGCATGGAGCCCACGACGATAACGAGCAACTGCAGCAGCAGCGTCACCGAGGACGCGCCGTCCGCCGACGCGCCCCCGTTCGCGCAGTTCTTCGCGTACCCGCAGTACGTGTGGTGCCACTCGCCGCGCGACTCCACCACCACCACCACCGCGGCGTCTGCGTCGGCGTCGGCTTCGGCGTCGTCGTCGTCGCCGGCCACGGTGGCGGCGGCGCTCCAGTCGGAGCACCGCTCCGGGTTGGCCGACATCGAGGTGAGCCTGGTCGAGACGCACGCCAGCGTCCGTGTCATGTCACCGCGGCGGCCAGGGCAGCTGCTCAAGATGATCGCCGGCCTGCAGGCCCTCCGGCTCACCGTGCTGCACCTCAACGTCACCACGCTGGACTCCCTTGTGCTCTACACCCTCAGCGTCAAGGTGGAGGAAGGATGCAGCCTGACGACGGTGGACGACATCGCGGCGGCGGTGCACCACGTGCTCTGCATCGTCGACGCGGAGGCGGCCGCCTCGGAGCATCTCCTCGCGGCGGGGCAACTGGCCACGACGGCGACGGCGGTGGCGAAGAGAGAACTCGCGACGTACATGTACTGAGCCGCTCCAAGTGCCTTACATGTCGTCGTTTGTGTGGTCGCGTGTACTGTATGCCGCGCTCCCGTTTTTCTCCCCTTTTTAGGCTCGTCACGTTTTTGCTGTGTAGTGGCCCGGCAGGTTAGATCTAGTTCTAGTTGTACTAGTAGATGCAAAATGCTATGTGTCCAGTAGTCCCAGCCTCTCGACGAGGGCGTACTTGTCTGTTTCTCGTTCTGAAAACAGAATGTTGTATTGCTGTACCTGTACAGTATCCTGCCTCGCCTTTCTGTAATAAGAGCGACTAGCGAGTAGCGACATTGGAAGGAACAGTTCGAGATTCGTATTATCCGAACAGGGCCTTATGAGG] [+] EMBL AK060695 [CAAAAGCGTAGCGACACACGAGAAGCCACCAGCCAACGTAGTACGCGCCGAGAGCTGAGGCCATCCACGACACACGAACATGAGCACACTAGTAGACGCGCTGTGCGCTCCCTGCAGCGACACCGCGCTCATCTACGACACCTTCAACGCCTCCGCCGCCGCGAGCTTCCTCTTCGACAATGCCGCCGCCTTCTGCGACGCTGACATCCTCGGCGCCACGGCGACAGGGGAGAAGGAGGCGACGTCGTCGGCCGCGGCCGCGGCCGCGGAAGCCGCCCCGCCGAGGAAGAAGCGGCGGCGGCGCGCGAAGAGCTGCAAGTCGCGGGAGGAGACGGAGACCCAGCGGATGACGCACATCGCCGTGGAGCGCAACCGCCGGCGCCAGATGAACGAGTACCTCGCCATCCTCCGGTCGCTCATGCCGGAGCCCTACGTCCAGAGGGGCGACCAGGCGTCCATTGTGGGAGGCGCAATCGAGTTCGTGAAGGAGCTCGAGCAGCAGCTGCAGTCGCTTGAGGCGCAGAAGCGAACGCTGCTCCCTCACCACAAGGCGAGATGCGACGACGCAACGCCGATGCATAACGCCAGCGGCAGCAACGTCGGGGCCGGCGGCTGCATGGAGCCCACGACGATAACGAGCAACTGCAGCAGCAGCGTCACCGAGGACGCGCCGTCCGCCGACGCGCCCCCGTTCGCGCAGTTCTTCGCGTACCCGCAGTACGTGTGGTGCCACTCGCCGCGCGACTCCACCACCACCACCACCGCGGCGTCTGCGTCGGCGTCGGCTTCGGCGTCGTCGTCGTCGCCGGCCACGGTGGCGGCGGCGCTCCAGTCGGAGCACCGCTCCGGGTTGGCCGACATCGAGGTGAGCCTGGTCGAGACGCACGCCAGCGTCCGTGTCATGTCACCGCGGCGGCCAGGGCAGCTGCTCAAGATGATCGCCGGCCTGCAGGCCCTCCGGCTCACCGTGCTGCACCTCAACGTCACCACGCTGGACTCCCTTGTGCTCTACACCCTCAGCGTCAAGGTGGAGGAAGGATGCAGCCTGACGACGGTGGACGACATCGCGGCGGCGGTGCACCACGTGCTCTGCATCGTCGACGCGGAGGCGGCCGCCTCGGAGCATCTCCTCGCGGCGGGGCAACTGGCCACGACGGCGACGGCGGTGGCGAAGAGAGAACTCGCGACGTACATGTACTGAGCCGCTCCAAGTGCCTTACATGTCGTCGTTTGTGTGGTCGCGTGTACTGTATGCCGCGCTCCCGTTTTTCTCCCCTTTTTAGGCTCGTCACGTTTTTGCTGTGTAGTGGCCCGGCAGGTTAGATCTAGTTCTAGTTGTACTAGTAGATGCAAAATGCTATGTGTCCAGTAGTCCCAGCCTCTCGACGAGGGCGTACTTGTCTGTTTCTCGTTCTGAAAACAGAATGTTGTATTGCTGTACCTGTACAGTATCCTGCCTCGCCTTTCTGTAATAAGAGCGACTAGCGAGTAGCGACATTGGAAGGAACAGTTCGAGATTCGTATTATCCGAACAGGGCCTTATGAGG] consensusID : consensus_836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [ATTCTCCTCTGTTACCCATCGTACGTAGACCAACATCCCCGGGGGTATTTTACTATACTAGTAGAGGCTATTGCATGGGTGATCACTGATCAGAATTGCGTCTCGCTGCTGCTGCTGTTGATGCTGCTCCATATCTGCCATGGCCGATTGCTTTTGACCAGAGATTCCATGGCGGAAAGGCCATTGCTTCCCTTGGCCCCTTGGGTGGAGGAAGGGTGCGGCATGGCGACGGTGGACGACATCGCAGCGGCGGTGCACCACGTGCTCTGCATCATCGACGCCGAGGCGGCGTCGCAGATGCTGCTCGCCGGGGAGGCCTCCGGTTAGCGTGGCCACCTAGCAAGATAGGCGCGCGGCGGCGGCCGGTGTAACAAATCTGTAAAGTGTAGCGGATCTCGATCGATCTCTCCCCTCCCGTAGGCGAGTCGGGTGATTTGGGGGTCGGTGGCGTAGGGCAAAAGCCCGTGTAAGTGCAATAACATGCGGCCCGTTGTAATCCTAGCCGGTTTTTTTTTTTTTTGCCGTCGAGTGTGTGCGTTTTGCGGTTTTCTCGGCGGAAGTCGACGTGGAATCCGGGGGAGTGAGACGGTGAAGAGAGGGTTTTTTTATCCTTGCTTGTCCCTCCATGTTGGGCCGACTAGGTACACAGCCTATGGGCTTGAGATTAGCACATGGTCCGGC] [+] EMBL AK062895 [ATTCTCCTCTGTTACCCATCGTACGTAGACCAACATCCCCGGGGGTATTTTACTATACTAGTAGAGGCTATTGCATGGGTGATCACTGATCAGAATTGCGTCTCGCTGCTGCTGCTGTTGATGCTGCTCCATATCTGCCATGGCCGATTGCTTTTGACCAGAGATTCCATGGCGGAAAGGCCATTGCTTCCCTTGGCCCCTTGGGTGGAGGAAGGGTGCGGCATGGCGACGGTGGACGACATCGCAGCGGCGGTGCACCACGTGCTCTGCATCATCGACGCCGAGGCGGCGTCGCAGATGCTGCTCGCCGGGGAGGCCTCCGGTTAGCGTGGCCACCTAGCAAGATAGGCGCGCGGCGGCGGCCGGTGTAACAAATCTGTAAAGTGTAGCGGATCTCGATCGATCTCTCCCCTCCCGTAGGCGAGTCGGGTGATTTGGGGGTCGGTGGCGTAGGGCAAAAGCCCGTGTAAGTGCAATAACATGCGGCCCGTTGTAATCCTAGCCGGTTTTTTTTTTTTTTGCCGTCGAGTGTGTGCGTTTTGCGGTTTTCTCGGCGGAAGTCGACGTGGAATCCGGGGGAGTGAGACGGTGAAGAGAGGGTTTTTTTATCCTTGCTTGTCCCTCCATGTTGGGCCGACTAGGTACACAGCCTATGGGCTTGAGATTAGCACATGGTCCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_836#0 CAAAAGCGTAGCGACACACGAGAAGCCACCAGCCAACGTAGTACGCGCCGAGAGCTGAGG 60 consensus_836#1 ------------------------------------------------------------ consensus_836#0 CCATCCACGACACACGAACATGAGCACACTAGTAGACGCGCTGTGCGCTCCCTGCAGCGA 120 consensus_836#1 ------------------------------------------------------------ consensus_836#0 CACCGCGCTCATCTACGACACCTTCAACGCCTCCGCCGCCGCGAGCTTCCTCTTCGACAA 180 consensus_836#1 ------------------------------------------------------------ consensus_836#0 TGCCGCCGCCTTCTGCGACGCTGACATCCTCGGCGCCACGGCGACAGGGGAGAAGGAGGC 240 consensus_836#1 ------------------------------------------------------------ consensus_836#0 GACGTCGTCGGCCGCGGCCGCGGCCGCGGAAGCCGCCCCGCCGAGGAAGAAGCGGCGGCG 300 consensus_836#1 ------------------------------------------------------------ consensus_836#0 GCGCGCGAAGAGCTGCAAGTCGCGGGAGGAGACGGAGACCCAGCGGATGACGCACATCGC 360 consensus_836#1 ------------------------------------------------------------ consensus_836#0 CGTGGAGCGCAACCGCCGGCGCCAGATGAACGAGTACCTCGCCATCCTCCGGTCGCTCAT 420 consensus_836#1 ------------------------------------------------------------ consensus_836#0 GCCGGAGCCCTACGTCCAGAGGGGCGACCAGGCGTCCATTGTGGGAGGCGCAATCGAGTT 480 consensus_836#1 ------------------------------------------------------------ consensus_836#0 CGTGAAGGAGCTCGAGCAGCAGCTGCAGTCGCTTGAGGCGCAGAAGCGAACGCTGCTCCC 540 consensus_836#1 ------------------------------------------------------------ consensus_836#0 TCACCACAAGGCGAGATGCGACGACGCAACGCCGATGCATAACGCCAGCGGCAGCAACGT 600 consensus_836#1 ------------------------------------------------------------ consensus_836#0 CGGGGCCGGCGGCTGCATGGAGCCCACGACGATAACGAGCAACTGCAGCAGCAGCGTCAC 660 consensus_836#1 ------------------------------------------------------------ consensus_836#0 CGAGGACGCGCCGTCCGCCGACGCGCCCCCGTTCGCGCAGTTCTTCGCGTACCCGCAGTA 720 consensus_836#1 ------------------------------------------------------------ consensus_836#0 CGTGTGGTGCCACTCGCCGCGCGACTCCACCACCACCACCACCGCGGCGTCTGCGTCGGC 780 consensus_836#1 ------------------------------------------------------------ consensus_836#0 GTCGGCTTCGGCGTCGTCGTCGTCGCCGGCCACGGTGGCGGCGGCGCTCCAGTCGGAGCA 840 consensus_836#1 -----------ATTCTCCTCTGTTACCCATCGTACGTAGACCAACATCCCCG--GGGGTA 47 ** * ** ** * * * ** * ** * * consensus_836#0 CCGCTCCGGGTTGGCCGACATCGAGGTGAGCCTGGTCGAGACGCACGCCAGCGTCCGTGT 900 consensus_836#1 TTTTACTATACTAGTAGAGGCTATTGCATGGGTGATCACTGATCAGAATTGCGTC----- 102 * * * ** * * ** ** ** ***** consensus_836#0 CATGTCACCGCGGCGGCCAGGGCAGCTGCTCAAGATGATCGCCGGCCTGCAGGCCCTCCG 960 consensus_836#1 ----TCGCTGCTGCTGCTGTTGATGCTGCTCCATAT--CTGCCA--------------TG 142 ** * ** ** ** * ******* * ** *** * consensus_836#0 GCTCACCGTGCTGCACCTCAACGTCACCACGCTGGACTCCCTTGTGCTCTACACCCTCAG 1020 consensus_836#1 GCCGATTGCTTTTGAC--CAGAGATTCCATGGCGGAAAGGCCATTGCTTC---CCTTGGC 197 ** * * * ** ** * *** * *** * **** ** * consensus_836#0 CGTCAAGGTGGAGGAAGGATGCAGCCTGACGACGGTGGACGACATCGCGGCGGCGGTGCA 1080 consensus_836#1 CCCTTGGGTGGAGGAAGGGTGCGGCATGGCGACGGTGGACGACATCGCAGCGGCGGTGCA 257 * ************ *** ** ** ******************* *********** consensus_836#0 CCACGTGCTCTGCATCGTCGACGCGGAGGCGGCCGCCTCGGAGCATCTCCTCGC-GGCGG 1139 consensus_836#1 CCACGTGCTCTGCATCATCGACGCCGAGGCGGCG---TCGCAGATGCTGCTCGCCGGGGA 314 **************** ******* ******** *** ** ** ***** ** * consensus_836#0 GGCAACTGGCCACGACGGCGACGGCGGTGGCGAAGAGAGAACTCGCGACGTACATGTACT 1199 consensus_836#1 GGCCTCCGGTTAGCGTGGCCACCTAGCAAGATAGGCGCGCGGCGGCGGCCGG--TGTAAC 372 *** * ** * *** ** * * * * * * *** * **** consensus_836#0 GAGCCGCTCCAAGTGCCTTACATGTCGTCGTTTGTGTGGTCGCGTGTACTGTATGCCGCG 1259 consensus_836#1 AAATCTGTA-AAGTGTAGCGGATCTCGATCGATCTCTCCCCTCCCGTAG-GCGAGTCGGG 430 * * * ***** ** *** * * * * * *** * * ** * consensus_836#0 CTCCCGTTTTTCTCCCCTTTTTAGGCTCGTCACGTTTTTGCTGTGTAGTGGCCCGGCAGG 1319 consensus_836#1 -TGATTTGGGGGTCGGTGGCGTAGGGCAAAAGCCCGTGTAA-GTGCAATAACATG--CGG 486 * * ** **** * * * *** * * * * ** consensus_836#0 TTAGATCTAGTTCTAGTTGTACTAGTAGATGCAAAATGCTATGTGTCCA-GTAGTCCCAG 1378 consensus_836#1 CCCGTTGTAATCCTAGCCGGTTTTTTTTTTTTTTGCCGTCGAGTGTGTGCGTTTTGCGGT 546 * * ** * **** * * * * * **** ** * * consensus_836#0 CCTCTCGACGAGGGCGTACTTGTCTGTTTCTCGTTCTGAAAACAGAATGTTGTATTGCTG 1438 consensus_836#1 TTTCTCGGCGGAAGTCGACGTG---GAATCCGG----GGGAGTGAGACGGTGAAGAGAGG 599 ***** ** * ** ** * ** * * * * * ** * * * consensus_836#0 TACCTGTACAGTATCCTGCCTCGCCTTTCTGTAATAAGAGCGACTAGCGAGTAGCGACAT 1498 consensus_836#1 GTTTTTT----TATCCTTGCTTGTCCCTCCATGTTGGGC-CGACTAG-GTACACAGCCTA 653 * * ****** ** * * ** * * * ******* * * * * consensus_836#0 TGGAAGGAACAGTTCGAGATT--CGTATTATCCGAACAGGGCCTTATGAGG 1547 consensus_836#1 TGG--------GCTTGAGATTAGCACATGGTCCGGC--------------- 681 *** * * ****** * ** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||