These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1236 fasta sequence [CGCCGCCGCTGCTACAGCCGTCGTCTCCCACCGCACGCCCCGCCCCGCCCCCCACCCATCGCCGGCGACGCGGATCCCTCCTCGACGGTGCGCCCGCCTGAGCAGCCGTGCTATACCTCTGTCGGGGGCATATTCCCCGCCGGCGCAGCAAGCTGAGCGGAGAGGAGGATGCCGAAGCGGACGACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAATGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGTTGTTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAA-CTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTTTTGAAACATTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTCTGTGTACCCTTCTTAGTTGTGATACAAACTGTACATCTTTATAACAATCCTGCAACGTTTTTTTTTGGGTGACCAATTTCGAGTCCAAAGCTTATGGTTACTCTGATTATTGGTGNACATATATCATTTCATGGTTCCTCTCGAATGTAATCCATTTTACAGCTCATCGGTCAATAGGATCCGTANGCC-AGATGTGNTGTCTTCTAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK059375 [CGCCGCCGCTGCTACAGCCGTCGTCTCCCACCGCACGCCCCGCCCCGCCCCCCACCCATCGCCGGCGACGCGGATCCCTCCTCGACGGTGCGCCCGCCTGAGCAGCCGTGCTATACCTCTGTCGGGGGCATATTCCCCGCCGGCGCAGCAAGCTGAGCGGAGAGGAGGATGCCGAAGCGGACGACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAATGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGTTGTTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAA CTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTTTTGAAACATTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTCTGTGTACCCTTCTTAGTTGTGATACAAACTGTACATCTTTATAACAATCCTGCAA ] [+] EMBL AK102836 [ TGCTACAGCCGTCGTCTCCCACCGCACGCCCCGCCCCGCCCCCCACCCATCGCCGGCGACGCGGATCCCTCCTCGACGGTGCGCCCGCCTGAGCAGCCGTGCTATACCTCTGTCGGGGGCATATTCCCCGCCGGCGCAGCAAGCTGAGCGGAGAGGAGGATGCCGAAGCGGACGACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAATGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGTTGTTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGGTGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAA CTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGGTTTGAAACATTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTCTGTGTACCCTTCTTAGTTGTGATACAAACTGTACATCTTTATAACAATCCTGCAACGTTTTTTTTT ] [+] EMBL CA766851 [ TGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAA CTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCAAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTTTTGAAACGTTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTTTGTGTACCCTTCTTAGTTGCGATACAAACTGTACATCTTTATAACAGTCCTGCAACGTTTTTTTTTGGGTGACCAATTTCGAGTCCAAAGCTTATGGTTACTCTGATTATTGGTGNACATATATCATTTCATGGTTCCTCTCGAATGTAATCCATTTTACAGCTCATCGGTCAATAGGATCCGTANGCC AGATGTGNTGTC ] [-] EMBL CA759994 [ tcCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTGGCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAGTGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACAACGAANCTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTCAAAGAGGATGGAATAATAAGTCAAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCAGAAGCAGAGGAGGTTTTGAAACGTTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTTCGGTTGTAAACGTGAGTGAACATAGTTTAAGATGACCGTGATGTAACGCTGTCTTTGTGTACCCTTTTTAGTTGCGATACAAACTGTACATCTTTATAACAGTCCTGCAACGTTTTTTTTTGGGTGACCAATTTCGAGTCCAAAGCTTATGGTTACTCTGATTATTGTTGTACATATATCATTTCATGTTTCCTCTCGAATGTAATCCATTTTACAGCTCATCGTTCAATAGGATCCGTAGGCCAAGATGTGTTGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence [GGGGGAATAACTACACTAGATGTCTGGGGAACAACCCTGTTAAGTTATTAGGCTCTTCATATCTTTTATCTATTCCTTTTGATTCAGCTCAATAACTGACTCAGAAGTTGAATCTAATCCTTCGATCATGCCAACAACAATGTGGTGGATTTGGGTTCTGTTTCCTGATTTTTGTTTCTTAGAGAATTAGCCAAAGGTACTATCTGCAAGCCTACCACCTTGTTATATGAATGCCATTTGTAACTGTTGCAACTCTATCTTCAACTGGAGGGATTGTGCTTTATGACATATTGAGTCATTCTATTTAGTTGCTAACCTGCCAAAGGATATTTGGGATCACAAAATTAATTGCCGTGTTATATAATGCTCACCATTTTTTAAGTTTAAGGAACATGATTTTGTATTTAGTATCTATTGTTGAGACTGTAACTGTCTGGAAATTTCCCCATTCTGATGTGTTTGTTCTAAAGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAACGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGGTGGTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGNAGGNGGNCTTGG] [+] EMBL CB096826 [GGGGGAATAACTACACTAGATGTCTGGGGAACAACCCTGTTAAGTTATTAGGCTCTTCATATCTTTTATCTATTCCTTTTGATTCAGCTCAATAACTGACTCAGAAGTTGAATCTAATCCTTCGATCATGCCAACAACAATGTGGTGGATTTGGGTTCTGTTTCCTGATTTTTGTTTCTTAGAGAATTAGCCAAAGGTACTATCTGCAAGCCTACCACCTTGTTATATGAATGCCATTTGTAACTGTTGCAACTCTATCTTCAACTGGAGGGATTGTGCTTTATGACATATTGAGTCATTCTATTTAGTTGCTAACCTGCCAAAGGATATTTGGGATCACAAAATTAATTGCCGTGTTATATAATGCTCACCATTTTTTAAGTTTAAGGAACATGATTTTGTATTTAGTATCTATTGTTGAGACTGTAACTGTCTGGAAATTTCCCCATTCTGATGTGTTTGTTCTAAAGATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAACGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTCATATATGGTGGTGATGGAGCACTAAGCTCAGTGGCGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGNAGGNGGNCTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8364#0 ------------------------------------------------------------ consensus_8364#1 GGGGGAATAACTACACTAGATGTCTGGGGAACAACCCTGTTAAGTTATTAGGCTCTTCAT 60 consensus_8364#0 ------------------------------------------------------------ consensus_8364#1 ATCTTTTATCTATTCCTTTTGATTCAGCTCAATAACTGACTCAGAAGTTGAATCTAATCC 120 consensus_8364#0 -----------------------------------------------------------C 1 consensus_8364#1 TTCGATCATGCCAACAACAATGTGGTGGATTTGGGTTCTGTTTCCTGATTTTTGTTTCTT 180 consensus_8364#0 GCCGCCGCTGCTACAGCCGTCGTCTCCCACCGCACGCCCCGCCCCGCCCCCCACCCATCG 61 consensus_8364#1 AGAGAATTAGCCAAAGGTACTATCTGCAAGCCTACCACCTTGTTATATGAATGCCATTTG 240 * ** * ** *** * * * ** ** ** * * consensus_8364#0 CCGGCGACGCGGATCCCTCCTCGAC-GGTGCGCCCGCCTGAGCAGCCGTGCTATACCTCT 120 consensus_8364#1 TAACTGTTGCAACTCTATCTTCAACTGGAGGGATTGTGCTTTATGACATATTGAGTCATT 300 * ** ** ** ** ** ** * * * * * * * * * consensus_8364#0 GTCGGGGGCATATTCCCCGCCGGCGCAGCAAGCTGAGCGGAGAGGAGGATGCCGAAGCGG 180 consensus_8364#1 CTATTTAGTTGCTAACCTGCCAAAGGATATTTGGGATCACAAAATTAATTGCCGTGTTAT 360 * * * ** *** * * ** * * * ***** consensus_8364#0 ACGACGCACACG--TACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCT 238 consensus_8364#1 ATAATGCTCACCATTTTTTAAGTTTAAGGAACATGATTTTGTATTTAGTATCT-ATTGTT 419 * * ** *** * * ** * ** * * ** * * consensus_8364#0 TCGTCTACTACTGC----AAGCACTGCGCCTCCCACGTCCTCATC--ACCGATACCCAAT 292 consensus_8364#1 GAGACTGTAACTGTCTGGAAATTTCCCCATTCTGATGTGTTTGTTCTAAAGATACCCAAT 479 * ** **** ** * ** * ** * * * ********** consensus_8364#0 TGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATC 352 consensus_8364#1 TGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATC 539 ************************************************************ consensus_8364#0 TCTCAAGGCTAAATGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGC 412 consensus_8364#1 TCTCAAGGCTAAACGTGAAGGAGGCAGGAAAGGTCCTGTTGAAACGGGGAGAAGGGAAGC 599 ************* ********************************************** consensus_8364#0 TTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAG 472 consensus_8364#1 TTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAG 659 ************************************************************ consensus_8364#0 AAGAGGAGTTGGAGCTAGCTCCATTCATATATGTTGTTGATGGAGCACTAAGCTCAGTGG 532 consensus_8364#1 AAGAGGAGTTGGAGCTAGCTCCATTCATATATGGTGGTGATGGAGCACTAAGCTCAGTGG 719 ********************************* ** *********************** consensus_8364#0 CGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGAAGGTG 592 consensus_8364#1 CGGCTGAAACAAATCCACATGATGCACCTGTACCACCTTGCATCACACAATTGGNAGGNG 779 ****************************************************** *** * consensus_8364#0 GCCTTGTCCAAGTAGCCATTGAGGTTGAAGACCGGGCACAACGGTCAGCAATAACAAGAG 652 consensus_8364#1 GNCTTGG----------------------------------------------------- 786 * **** consensus_8364#0 TGAATGCTGATGATGTTCGAGTAACAGTTGCTGCTCCTGCTGCTCGAGGGGAAGCAAACA 712 consensus_8364#1 ------------------------------------------------------------ consensus_8364#0 ACGAACTACTAGAGTTCATGGGCAAGGTTCTTGGCTTAAGACTCAGTCAGATGACCCTTC 772 consensus_8364#1 ------------------------------------------------------------ consensus_8364#0 AAAGAGGATGGAATAATAAGTCGAAGCTTCTGATTGTTGAAGATTTGTCAGCACGGCAAG 832 consensus_8364#1 ------------------------------------------------------------ consensus_8364#0 TGTATGAGAAGCTCCTAGAAGCTGTCCAGCCTTAAATTTGTGGCAGCTCCTAACGGAGCA 892 consensus_8364#1 ------------------------------------------------------------ consensus_8364#0 GAAGCAGAGGAGGTTTTGAAACATTGCTGGATTCATTAGCTTATCGGAGTTGCATTGTTT 952 consensus_8364#1 ------------------------------------------------------------ consensus_8364#0 CGGTTGTAAACGTGAGTGAACATAGTCTAAGATGACCGTGATGTAACGCTGTCTCTGTGT 1012 consensus_8364#1 ------------------------------------------------------------ consensus_8364#0 ACCCTTCTTAGTTGTGATACAAACTGTACATCTTTATAACAATCCTGCAACGTTTTTTTT 1072 consensus_8364#1 ------------------------------------------------------------ consensus_8364#0 TGGGTGACCAATTTCGAGTCCAAAGCTTATGGTTACTCTGATTATTGGTGNACATATATC 1132 consensus_8364#1 ------------------------------------------------------------ consensus_8364#0 ATTTCATGGTTCCTCTCGAATGTAATCCATTTTACAGCTCATCGGTCAATAGGATCCGTA 1192 consensus_8364#1 ------------------------------------------------------------ consensus_8364#0 NGCCAGATGTGNTGTCTTCTAAAAAAAAAAAAAAAAAAAAAAAA 1236 consensus_8364#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||