These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1116 fasta sequence [CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACCCGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAGATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAGGTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTGTTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAACTCAATTTTCACAAGGGTACTATATATATACTTTAG] [+] EMBL AK059753 [CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACCCGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAGATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAGGTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTGTTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAACTCAATTTTCACAAGGGTACTATATATATACTTTAG] [+] EMBL AU070505 [ GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAGATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAGGTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTANCAGTTTGTTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAANGTCTTTCAAGGAGTGAACCATGGNTTCGCTTGCAagg ] [+] EMBL AU097004 [ TGCAGGTATAACGCCAGCACCCCTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAACTCAATTTTCAC ] consensusID : consensus_8366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [GTTTACCAGTTTGNTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCNCGTTCNCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU032123 [GTTTACCAGTTTGNTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCNCGTTCNCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8366#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAAGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGTTAGTNCATNCCTGCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGATATATTGTGGATTCATTTATTACTAACCATTAATTAATCTTGAATTCTTGCTGTTGCATGTNAGTGGTTGCGTGGTTGTTAATTGTGGGTCTCTACTTC] [+] EMBL AU095540 [GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAAGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGTTAGTNCATNCCTGCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGATATATTGTGGATTCATTTATTACTAACCATTAATTAATCTTGAATTCTTGCTGTTGCATGTNAGTGGTTGCGTGGTTGTTAATTGTGGGTCTCTACTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8366#0 CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACC 60 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 CGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGT 120 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 GTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCG 180 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 TCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCA 240 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 TCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATA 300 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 AAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACA 360 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 CATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAG 420 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 ATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAG 480 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 GTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAA 540 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 TTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCA 600 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 TTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTG 660 consensus_8366#1 -----------------------------------------------GTTTACCAGTTTG 13 consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 TTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAG 720 consensus_8366#1 NTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAG 73 consensus_8366#2 -----GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCC-GCCG-GACCTGACGACGGC 53 *** * * * * * ** * *** * ** * * * consensus_8366#0 TGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTT-CGAGGTCAAAAAAGCT 779 consensus_8366#1 TGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGAGGTCAAAAAAGCT 133 consensus_8366#2 CGG-TGGCGGCGGCGAA-GCCGGCGTG--GTCGTCCACGATCTTGGAGGATTCGAGGCCT 109 * ** ** ** ** * * * * ** * * **** * ** consensus_8366#0 GAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAA-ATGAAGATTGCT 838 consensus_8366#1 GAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAA-ATGAAGATTGCT 192 consensus_8366#2 ACGTCACCGGCGCCGTCCATTCCAGGCGGAC----CATCCTCTTGGCCACCGACATCTTC 165 * * * *** ** * * * * ** * **** * * ** consensus_8366#0 AATTAATC-ATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTC 897 consensus_8366#1 AATTAATC-ATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCNCGTTCNC 251 consensus_8366#2 GGTTAGTNCATNCCTGCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGAT 225 *** * ** * * ** * * **** * * * * * * consensus_8366#0 GATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATT 957 consensus_8366#1 GATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATT 311 consensus_8366#2 ATATTGTGGATTCATTTATTAC-TAACCAT-TAATTAATCTTGAATTCTTGCTGTTGCAT 283 * ** *** * * **** * ** ** * * * ** ** * * consensus_8366#0 ATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAAT 1017 consensus_8366#1 ATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA------------------ 353 consensus_8366#2 GTNAGTGGTTGCGTGGTTGTTAATTGTGGGTCTCTACTTC-------------------- 323 * * ** * * ** consensus_8366#0 TATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTA 1077 consensus_8366#1 ------------------------------------------------------------ consensus_8366#2 ------------------------------------------------------------ consensus_8366#0 CAACTCAATTTTCACAAGGGTACTATATATATACTTTAG 1116 consensus_8366#1 --------------------------------------- consensus_8366#2 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||