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Oryza sativa
cluster # 8366 cluster # 8366       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8366#0 length = 1116 sequences # 3  
consensus_8366#1 length = 353 sequences # 1  
consensus_8366#2 length = 323 sequences # 1  

consensusID : consensus_8366#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1116
fasta sequence
                              [CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACCCGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAGATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAGGTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTGTTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAACTCAATTTTCACAAGGGTACTATATATATACTTTAG]

[+] EMBL AK059753             [CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACCCGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAGATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAGGTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTGTTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAACTCAATTTTCACAAGGGTACTATATATATACTTTAG]
[+] EMBL AU070505             [                                                                                                  GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAGATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAGGTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTANCAGTTTGTTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAANGTCTTTCAAGGAGTGAACCATGGNTTCGCTTGCAagg                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU097004             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGCAGGTATAACGCCAGCACCCCTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAACTCAATTTTCAC                        ]


>consensus_8366#0 CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACC CGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGT GTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCG TCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCA TCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATA AAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACA CATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAG ATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAG GTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAA TTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCA TTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTG TTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAG TGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTCGAGGTCAAAAAAGCTG AGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAA TTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGAT ATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATA TGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTAT ACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAA CTCAATTTTCACAAGGGTACTATATATATACTTTAG



consensusID : consensus_8366#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence
                              [GTTTACCAGTTTGNTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCNCGTTCNCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU032123             [GTTTACCAGTTTGNTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCNCGTTCNCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8366#1 GTTTACCAGTTTGNTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAG GTCTTTCAAGGAGTGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGA GGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAA ATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAA CTCNCGTTCNCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATT TTCTTTAAATTATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_8366#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence
                              [GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAAGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGTTAGTNCATNCCTGCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGATATATTGTGGATTCATTTATTACTAACCATTAATTAATCTTGAATTCTTGCTGTTGCATGTNAGTGGTTGCGTGGTTGTTAATTGTGGGTCTCTACTTC]

[+] EMBL AU095540             [GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAAGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGTTAGTNCATNCCTGCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGATATATTGTGGATTCATTTATTACTAACCATTAATTAATCTTGAATTCTTGCTGTTGCATGTNAGTGGTTGCGTGGTTGTTAATTGTGGGTCTCTACTTC]


>consensus_8366#2 GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGC GGCGGCGAAGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGC GCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGTTAGTNCATNCCT GCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGATATATTGTGGATTCAT TTATTACTAACCATTAATTAATCTTGAATTCTTGCTGTTGCATGTNAGTGGTTGCGTGGT TGTTAATTGTGGGTCTCTACTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8366#0      CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACC 60
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      CGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGT 120
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      GTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCG 180
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      TCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCA 240
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      TCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATA 300
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      AAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACA 360
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      CATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAG 420
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      ATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAG 480
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      GTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAA 540
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      TTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCA 600
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      TTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTG 660
consensus_8366#1      -----------------------------------------------GTTTACCAGTTTG 13
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      TTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAG 720
consensus_8366#1      NTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAG 73
consensus_8366#2      -----GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCC-GCCG-GACCTGACGACGGC 53
                           ***   *  *      *  *     * **  *    ***  *  **  * * *  

consensus_8366#0      TGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTT-CGAGGTCAAAAAAGCT 779
consensus_8366#1      TGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGAGGTCAAAAAAGCT 133
consensus_8366#2      CGG-TGGCGGCGGCGAA-GCCGGCGTG--GTCGTCCACGATCTTGGAGGATTCGAGGCCT 109
                       *       **  **   ** **  *   * *  * **  * *  ****     *   **

consensus_8366#0      GAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAA-ATGAAGATTGCT 838
consensus_8366#1      GAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAA-ATGAAGATTGCT 192
consensus_8366#2      ACGTCACCGGCGCCGTCCATTCCAGGCGGAC----CATCCTCTTGGCCACCGACATCTTC 165
                        *  * *     ***  ** *  * * *      **  * ****   *   * **    

consensus_8366#0      AATTAATC-ATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTC 897
consensus_8366#1      AATTAATC-ATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCNCGTTCNC 251
consensus_8366#2      GGTTAGTNCATNCCTGCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGAT 225
                        *** *  ** *  *   ** * *     **** *       * * *      * *   

consensus_8366#0      GATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATT 957
consensus_8366#1      GATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATT 311
consensus_8366#2      ATATTGTGGATTCATTTATTAC-TAACCAT-TAATTAATCTTGAATTCTTGCTGTTGCAT 283
                          *     **    *** *   * ****  * ** ** *  * *  ** ** *    *

consensus_8366#0      ATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAAT 1017
consensus_8366#1      ATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA------------------ 353
consensus_8366#2      GTNAGTGGTTGCGTGGTTGTTAATTGTGGGTCTCTACTTC-------------------- 323
                       *  *  **    *  * **                                        

consensus_8366#0      TATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTA 1077
consensus_8366#1      ------------------------------------------------------------
consensus_8366#2      ------------------------------------------------------------
                                                                                  

consensus_8366#0      CAACTCAATTTTCACAAGGGTACTATATATATACTTTAG 1116
consensus_8366#1      ---------------------------------------
consensus_8366#2      ---------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)