These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1126 fasta sequence [GCGCCACACTCCTCGAACCACCACCACCACCACCACGTGTTCGATCGCGTCCTCCAAGCCCCAGCACCTACGCGTCGTCGCGCCATGGCCGGCTTCGGCTTGGACCAGCACCTCGACCTCATCCGCGCCCACCTCCTCGAAGACGCCCACCACCACGTCCTCGCGCCATCGCCGTCGCCCTCGCCACCGGGTACTGGGCGTGTCAGGCCGGCGCCCGTGTCGCTGCCCCCGAGGCCGCCGCTCCTGTGGGCGGCGGCGTCGGCGGCGCCGCGGCAGCAGGAGGAGTGCTTCGAGCTCGGCGGCGGCTACGCGGGGGAGGGGGAGGGGGAGGAGGAGGACGACTTCCGGCGGTACCGCGGGGTGCGGCAGCGGCCGTGGGGCAAGTACGCGGCGGAGATCCGGGACCCGGCGAGGAAGGGCGCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGCGCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCCGACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCCGGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAGAGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCAGCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTGTCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGAACACGTGATTTTGCTTTTGACTATGCTATTTGATGATTAAACAGAGAAGAAATATTCGTCTTACAAGATCATATCACCGAAAAGACTAGCTAGGCGCATGGAGTAGTACTGGAAACAAGCTCTGCTAAGGCCCTCTTTGTTTAGGCTTAAGCTTATTGGACTAGACTTTTAAGCCAGCTGTGGTTAATCTAGGCCCATTTTGGAAAAAAAAACATTAGCTGTAATTTTTCTCGAAGTTATATATTTCTTGCAC] [+] EMBL AY341826 [GCGCCACACTCCTCGAACCACCACCACCACCACCACGTGTTCGATCGCGTCCTCCAAGCCCCAGCACCTACGCGTCGTCGCGCCATGGCCGGCTTCGGCTTGGACCAGCACCTCGACCTCATCCGCGCCCACCTCCTCGAAGACGCCCACCACCACGTCCTCGCGCCATCGCCGTCGCCCTCGCCACCGGGTACTGGGCGTGTCAGGCCGGCGCCCGTGTCGCTGCCCCCGAGGCCGCCGCTCCTGTGGGCGGCGGCGTCGGCGGCGCCGCGGCAGCAGGAGGAGTGCTTCGAGCTCGGCGGCGGCTACGCGGGGGAGGGGGAGGGGGAGGAGGAGGACGACTTCCGGCGGTACCGCGGGGTGCGGCAGCGGCCGTGGGGCAAGTACGCGGCGGAGATCCGGGACCCGGCGAGGAAGGGCGCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGCGCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCCGACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCCGGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAGAGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCAGCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTGTCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGAACACGTGATTTTGCTTTTGACTATGCTATTTGATGATTAAACAGAGAAGAAATATTCGTCTTACAAGATCATATCACCGAAAAGACTAGCTAGGCGCATGGAGTAGTACTGGAAACAAGCTCTGCTAAGGCCCTCTTTGTTTAGGCTTAAGCTTATTGGACTAGACTTTTAAGCCAGCTGTGGTTAATCTAGGCCCATTTTGGAAAAAAAAACATTAGCTGTAATTTTTCTCGAAGTTATATATTTCTTGCAC] [+] EMBL CB657912 [ TCCAAGCCCCAGCACCTACGCGTCGTCGCGCCATGGCCGGCTTCGGCTTGGACCAGCACCTCGACCTCATCCGCGCCCACCTCCTCGAAGACGCCCACCACCACGTCCTCGCGCCATCGCCGTCGCCCTCGCCACCGGGTACTGGGCGTGTCAGGCCGGCGCCCGTGTCGCTGCCCCCGAGGCCGCCGCTCCTGTGGGCGGCGGCGTCGGCGGCGCCGCGGCAGCAGGAGGAGTGCTTCGAGCTCGGCGGCGGCTACGCGGGGGAGGGG ] consensusID : consensus_8368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 793 fasta sequence [AGATCCGGGACCCGCGAGGGAAGGGCGCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGCGCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCCGACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCCGGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAGAGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCAGCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTGTCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAAGCTGATCGATCGCTAGCTCCGGCCATGGACGGCGCCGTGGCGAGCTTGGAGTGCAGCCATGGCGCGCGCCCGGCGCGGTACACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAATCCTGAATTAGATAGGGTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATGATCATAGTAGCTTCATTGCGATTTGTCAATGAAATGATATAAATATGTATTAATTACAAGTTGAAGAGTACTAATGAAGAACATCAGAGGCTCAGAGCAATTGAGCGC] [-] EMBL CB657913 [AGATCCGGGACCCGCGAGGGAAGGGCGCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGCGCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCCGACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCCGGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAGAGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCAGCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTGTCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAAGCTGATCGATCGCTAGCTCCGGCCATGGACGGCGCCGTGGCGAGCTTGGAGTGCAGCCATGGCGCGCGCCCGGCGCGGTACACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAATCCTGAATTAGATAGGGTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATGATCATAGTAGCTTCATTGCGATTTGTCAATGAAATGATATAAATATGTATTAATTACAAGTTGAAGAGTACTAATGAAGAACATCAGAGGCTCAGAGCAATTGAGCG ] [+] EMBL AK107989 [ ATCGATCGCTAGCTCCGGCCATGGACGGCGCCGTGGCGAGCTTGGAGTGCAGCCATGGCGCGCGCCCGGCGCGGTACACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAATCCTGAATTAGATAGGGTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATGATCATAGTAGCTTCATTGCGATTTGTCAATGAAATGATATAAATATGTATTAATTACAAGTTGAAGAGTACTAATGAAGAACATCAGAGGCTCAGAGCAATTGAGCGC] [-] EMBL AW070010 [ gcCGAGGTACACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAATCCTGAATTAGATAGGGTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATGATCATAGTAGCTTCATTGCGATTTGTCAATGAAATCATATAAATATGTATTAATTACAAGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8368#0 GCGCCACACTCCTCGAACCACCACCACCACCACCACGTGTTCGATCGCGTCCTCCAAGCC 60 consensus_8368#1 ------------------------------------------------------------ consensus_8368#0 CCAGCACCTACGCGTCGTCGCGCCATGGCCGGCTTCGGCTTGGACCAGCACCTCGACCTC 120 consensus_8368#1 ------------------------------------------------------------ consensus_8368#0 ATCCGCGCCCACCTCCTCGAAGACGCCCACCACCACGTCCTCGCGCCATCGCCGTCGCCC 180 consensus_8368#1 ------------------------------------------------------------ consensus_8368#0 TCGCCACCGGGTACTGGGCGTGTCAGGCCGGCGCCCGTGTCGCTGCCCCCGAGGCCGCCG 240 consensus_8368#1 ------------------------------------------------------------ consensus_8368#0 CTCCTGTGGGCGGCGGCGTCGGCGGCGCCGCGGCAGCAGGAGGAGTGCTTCGAGCTCGGC 300 consensus_8368#1 ------------------------------------------------------------ consensus_8368#0 GGCGGCTACGCGGGGGAGGGGGAGGGGGAGGAGGAGGACGACTTCCGGCGGTACCGCGGG 360 consensus_8368#1 ------------------------------------------------------------ consensus_8368#0 GTGCGGCAGCGGCCGTGGGGCAAGTACGCGGCGGAGATCCGGGACCCGGCGAGGAAGGGC 420 consensus_8368#1 ----------------------------------AGATCCGGGACCCGCGAGGGAAGGGC 26 ************** ******** consensus_8368#0 GCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGC 480 consensus_8368#1 GCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGC 86 ************************************************************ consensus_8368#0 GCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCC 540 consensus_8368#1 GCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCC 146 ************************************************************ consensus_8368#0 GACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCC 600 consensus_8368#1 GACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCC 206 ************************************************************ consensus_8368#0 GGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAG 660 consensus_8368#1 GGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAG 266 ************************************************************ consensus_8368#0 AGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCA 720 consensus_8368#1 AGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCA 326 ************************************************************ consensus_8368#0 GCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTG 780 consensus_8368#1 GCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTG 386 ************************************************************ consensus_8368#0 TCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAATCGATTTGGCT------TTC 834 consensus_8368#1 TCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAAGCTGATCGATCGCTAGCTCC 446 **************************************** * * * * * consensus_8368#0 GGCCAAATATTGAATTCTTTCGTTCTATTGCTGC--TCAGAACACGTGATTT-TGCTTTT 891 consensus_8368#1 GGCCATGGACGGCGCCGTGGCGAGCTTGGAGTGCAGCCATGGCGCGCGCCCGGCGCGGTA 506 ***** * * * ** ** *** ** * ** * ** * consensus_8368#0 GAC-TATG-CTATTTGATGATTAAA-CAGAGAAGAAATATTCGTCTTACAAGATCATATC 948 consensus_8368#1 CACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAAT 566 ** *** ** ** * * * ** * * * ** * * * * ** consensus_8368#0 ACCGAAAAGACTAGCTAGGCGCATGGAGTAGTACTGGAAACAAGCTCTGCTAAGGCCCTC 1008 consensus_8368#1 CCTGAATTAGATAGG-GTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATC 625 * *** *** * * * ** ** * * **** * * *** ** consensus_8368#0 --TTTG--TTTAGGCTTAAGCTTA-------TTGGACTA--GACTTTTAAGCCAGCTGTG 1055 consensus_8368#1 GATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATG 685 **** *** *** ** ** * * *** * * * * * * ** consensus_8368#0 GTTAATCTAGGCCCATT-----TTGGAAAAAAAAACAT-TAGCTGTAATTTTTCTCGAAG 1109 consensus_8368#1 ATCATAGTAGCTTCATTGCGATTTGTCAATGAAATGATATAAATATGTATTAATTACAAG 745 * * *** **** *** ** *** ** ** * * ** * *** consensus_8368#0 TTATATATTTCTTGCAC------------------------------- 1126 consensus_8368#1 TTGAAGAGTACTAATGAAGAACATCAGAGGCTCAGAGCAATTGAGCGC 793 ** * * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||