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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1220 fasta sequence
[TACTTCTCCACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAAGAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATTAGACGTATATTGGATTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTAATACTAAATTGGTTTTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTTATTTTTTCTATCTATATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTGTAATGAATTTCAGTTTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTCATTACGACGGGTGATATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCATCTATAGCTAAATTTATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTATCATACACACATTATGTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTGTTCTTCTCTTTTCCTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATTGTATCTGCTCTAAGGCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAGTAATGTGCACATGGCGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACCACACATAAATTTGCAAACAA]
[+] EMBL AK120463 [TACTTCTCCACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTC ]
[+] EMBL AK071612 [ ACTCACTCCCCTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAAGAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATTAGACGTATATTGGATTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTAATACTAAATTGGTTTTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTTATTTTTTCTATCTATATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTGTAATGAATTTCAGTTTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTCATTACGACGGGTGATATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCATCTATAGCTAAATTTATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTATCATACACACATTATGTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTGTTCTTCTCTTTTCCTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATTGTATCTGCTCTAAGGCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAGTAATGTGCACATGGCGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACCACACATAAATTTGCAAACAA]
[+] EMBL CB644352 [ ATCGGCGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATATATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAAGAAACACGTAG ]
consensusID : consensus_8375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 652 fasta sequence
[TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGACGGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCACGCAACAGAT-CTGTCGGTGTCGACGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTCGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATATGGTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT]
[+] EMBL CA765378 [TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGACGGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGCACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCACGCAACAGAT CTGTCGGTGTCGACGGCTTCCCACAACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGATCTGGGAGGGTTTTTTTCGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATATGGTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT]
[+] EMBL BI804330 [ TGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGACGGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGT CTGCCTCACCGCGAGCACCGGCGGCACTTCCC AACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCGGCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACGCCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGATGGCGACGCCACGTCGGCGGCTTCACGCAACAGATCCTGTCGGTGTCGACGGCTTCCCCCAACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGGATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGATTTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAAaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8375#0 ----------------------------------TACTTCTCCACTCACTCCCC------ 20
consensus_8375#1 TTCTGTCTCGTGGCTCTCTCCGTCTCCCCGTCTCTACTTCTCCACTCACTCCCCAGCGAC 60
********************
consensus_8375#0 ------------TCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGC 68
consensus_8375#1 GGCGGCGTCGCTTCTCTCTCTCACATCGGTGGGCGAGCGGGGTGCTGCCTCACCGCGAGC 120
************************************************
consensus_8375#0 ACCGGCGGCACTTCCCAAACCATGACAGCAACGACGGCGCCCTCCCCACCGTGAGCAGCG 128
consensus_8375#1 ACCGGCGGCACTTCCCAAACCATGACAACAACGACGGCGCCCTCCCCACCGTGAGCAGCG 180
*************************** ********************************
consensus_8375#0 GCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACG 188
consensus_8375#1 GCAGCGACGGCGCCCTCTCCACCCTCAAGATCACCACGAGCGGCAGCGGTGGCGGCGACG 240
************************************************************
consensus_8375#0 CCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGA 248
consensus_8375#1 CCCTCCCCCACCACGAGCGGCAGCGATGACGGCGTCAATGGCTTCCCCTGGTGGATCCGA 300
************************************************************
consensus_8375#0 TGGCGACGCCACGTCGGCGGCTTC-------------------------------CCACA 277
consensus_8375#1 TGGCGACGCCACGTCGGCGGCTTCACGCAACAGATCTGTCGGTGTCGACGGCTTCCCACA 360
************************ *****
consensus_8375#0 ACGAGATTGGATTTTTTTTTTCATG-----------------------AGATTGGATTGG 314
consensus_8375#1 ACGAGATTGGATTTTTTTTTTCATGGGATTTCAGTATTTTGTTTTTTGAGATTGGATTGG 420
************************* ************
consensus_8375#0 ATTTATTGGAGAGGAGTTTAGGATTTGTCTCGTGTGTCTTGAGATTGGATTTGGGGGGAT 374
consensus_8375#1 ATTTATTGGAGAGGAGTTTAGGATTTGTCCCGTGTGTCTTGAGATTGGATTTGGGGGGAT 480
***************************** ******************************
consensus_8375#0 TTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGAT 434
consensus_8375#1 TTTACGATTTTTCCGTGTGTGTTTGGGGAATCAGACTCGGATTGAACGCAACACAGCGAT 540
************************************************************
consensus_8375#0 CTGGGAGGGTTTTTTTTCGCGTCATTAAATCGGACTATCCTTTTTCTTTTCTTTTTATAT 494
consensus_8375#1 CTGGGAGGGTTTTTTT-CGCGTCATTGAATCGGACTATCCTTTTTCTTTTCTTTTTATA- 598
**************** ********* ********************************
consensus_8375#0 ATGTTTTTTCGCCCTTTTATTTTGTATAAATTTTGTGTGTATAAAACTTCAGTTTTTAAA 554
consensus_8375#1 -TGGTTTTTCGCCCTTTTATTTTGNATAAAATTTGGGNGTATAAAGCTTCAGTTT----- 652
** ******************** ***** **** * ******* *********
consensus_8375#0 GAAACACGTAGTCCCCCGTCCAAAAAACTCAACCTAATATTGGATTAGACGTATATTGGA 614
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 TTAGAAAGGACAACAAATTTAGGCATACTAGAAAACGTAATATCTAATACTAAATTGGTT 674
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 TTAAATAGAATATGAGGAAAGGTTGGGTCGTTGGTTCACATGGTTTATTTTTTCTATCTA 734
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 TATTATCTTATGCATACATTGGGATTATCAGTAGTTTCTCATTCTGTAATGAATTTCAGT 794
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 TTTGAAAACTACATACCAATTTAAAATGGAAGATGGTTCACCTCTCATTACGACGGGTGA 854
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 TATAAGAGCAAGTTTAATAGTATAGCTCACTACTAGCTCCAAATCATCTATAGCTAAATT 914
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 TATACAATAGTTGTTTACTATACTATTAATACTTAGTCCCACCTATCATACACACATTAT 974
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 GTCTTAAAGTCCGTGCTGTAGCTGGCTACAGATCTGTAGTCCACTGTTCTTCTCTTTTCC 1034
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 TTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGCCTACTATTGTATCTGCTCTAAG 1094
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 GCTATCTTTGCTGGTTCACTAGAAAATCAGTTGTCAGTACAGTCAGTAATGTGCACATGG 1154
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 CGATTGGATTGGTGGATGACATGTACGCGGGTATGCTGTTTTTACCACACATAAATTTGC 1214
consensus_8375#1 ------------------------------------------------------------
consensus_8375#0 AAACAA 1220
consensus_8375#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||