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Oryza sativa
cluster # 8376 cluster # 8376       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8376#0 length = 1235 sequences # 5  

consensusID : consensus_8376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1235
fasta sequence
                              [CCGCCGTCGCCGCCGCCTCCACCTCCCGTACCCTCGTCCTCGCCCGCCACCGCTCGCCGCCGGCGTCTAGGGTCGCGGCGACAAGCCGCGGGCGTCCGTTCTCCTCCGGCCCCCATCCCCTCGCCGTCTCTCCCGCCACCCGCGCCCCCGCCATGGCCACCGACGGCGCCGCCGCCGCCGCCGCGGCAGGGTCGAAGAAGAAGAAGGAGGTGCTCATCTTCGACGCCGAGGAGGACCTCGCGGTGTCCCTGGCGAAGTACACGGCGGAGCTGTCCGCGAAGCTCGCCGCCGAGAGGGGCGCCTTCACCGTCGTGCTCTCCGGCGGATCCCTCATCAAGAACATCAGGAAGCTCGCGGAGCCACCGTACCTGGATTCGGTGGATTGGAGCAAGTGGCATGTGTTCTGGGTGGACGAGAGGGTGGTGCCCAAGGACCATGAGGATAGCAACTACAAGCTCGCCTTGGATGGGTTTCTCTCCAAGGTCCCAATTCCTACTGGCCAAGTTTATGCTATAAATGATGCCTTGTCAGCTGAGGGAGCAGCGGATGACTATGAAACTTGCTTGAAGCAACTTGTCAAGAATGGTGTGATTGCAATGTCGCAATCGACTGGGTTTCCTAGGTTTGATGTCATGCTCCTGGGAATGGGCCCTGATGGCCATATTGCATCTCTTTTCCCAGGCCACCCTCTTGTTAATGAAAACAAGAAGTGGGTCACCTACATCAAGGATTCTCCAAAGCCACCACCTGAGAGAATTACGTTTACATTTCCTGTGATCAACTCATCTGCGTATGTCGCAATGGTGGTCACTGGAGCTGGGAAAGCTGGTGCAGTGCAGAAAGCACTTTCAGATAAGCAGACTTCGTCTGATTTGCTGCCTGTAGAAATGGCTGTACTTCAAGATGGGGAATTCACTTGGTTCACTGACAAGCCAGCAGTGTCAATGTTACAGAACAAATGAGGTCCATGCCTGGATATTGTTTAAGCTTTCATCTTAAATAAAGATCCAGGGGCTAATCCCAGCCTGGATACTGTTTAAGCTTTCAATCCAAAGCTGGGTTGTAATGATCTTCAGTCTAAAAAAGGATCCAGGTGACTGCATAGTTGCATTCCTCTTTTATGCATCACTTGTAAGGAAAACATGAGCATGTATGTTGTATGTTGTTCAGAGTGATGTATCTGAGACACTCCTGGTTTCGGCTTAGTAAATAACCTTTCCTGGCCAAAAAAAAAA]

[+] EMBL AK069696             [CCGCCGTCGCCGCCGCCTCCACCTCCCGTACCCTCGTCCTCGCCCGCCACCGCTCGCCGCCGGCGTCTAGGGTCGCGGCGACAAGCCGCGGGCGTCCGTTCTCCTCCGGCCCCCATCCCCTCGCCGTCTCTCCCGCCACCCGCGCCCCCGCCATGGCCACCGACGGCGCCGCCGCCGCCGCCGCGGCAGGGTCGAAGAAGAAGAAGGAGGTGCTCATCTTCGACGCCGAGGAGGACCTCGCGGTGTCCCTGGCGAAGTACACGGCGGAGCTGTCCGCGAAGCTCGCCGCCGAGAGGGGCGCCTTCACCGTCGTGCTCTCCGGCGGATCCCTCATCAAGAACATCAGGAAGCTCGCGGAGCCACCGTACCTGGATTCGGTGGATTGGAGCAAGTGGCATGTGTTCTGGGTGGACGAGAGGGTGGTGCCCAAGGACCATGAGGATAGCAACTACAAGCTCGCCTTGGATGGGTTTCTCTCCAAGGTCCCAATTCCTACTGGCCAAGTTTATGCTATAAATGATGCCTTGTCAGCTGAGGGAGCAGCGGATGACTATGAAACTTGCTTGAAGCAACTTGTCAAGAATGGTGTGATTGCAATGTCGCAATCGACTGGGTTTCCTAGGTTTGATGTCATGCTCCTGGGAATGGGCCCTGATGGCCATATTGCATCTCTTTTCCCAGGCCACCCTCTTGTTAATGAAAACAAGAAGTGGGTCACCTACATCAAGGATTCTCCAAAGCCACCACCTGAGAGAATTACGTTTACATTTCCTGTGATCAACTCATCTGCGTATGTCGCAATGGTGGTCACTGGAGCTGGGAAAGCTGGTGCAGTGCAGAAAGCACTTTCAGATAAGCAGACTTCGTCTGATTTGCTGCCTGTAGAAATGGCTGTACTTCAAGATGGGGAATTCACTTGGTTCACTGACAAGCCAGCAGTGTCAATGTTACAGAACAAATGAGGTCCATGCCTGGATATTGTTTAAGCTTTCATCTTAAATAAAGATCCAGGGGCTAATCCCAGCCTGGATACTGCTTAAGCTTTCAATCCAAAGCTGGGTTGTAATGATCTTCTGTCTAAAAAAGGATCCAGGTGACTGCATAGTTGCATTCCTCTTTTATGCATCACTTGTAAGGAAAACATGAGCATGTATGTTGTATGTTGTTCAGAGTGATGTATCTGAGACACTCCTGGTTTCGACTTAGTAAATAACC                    ]
[+] EMBL CA748459             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTGTCAGCTGAGGGAGCAGCGGATGACTATGAAACTTGCTTGAAGCAACTTGTCAAGAATGGTGTGATTGCAATGTCGCAATCGACTGGGTTTCCTAGGTTTGATGTCATGTTCCTGGGAATGGGCCCTGATGGCCATATTGCATCTCTTTTCCCAGGCCACCCTCTTGTTAATGAAAACAAGAAGTGGGTCACCTACATCAAGGATTCTCCAAAGCCACCACCTGAGAGAGTTACGTTTACATTTCCTGTGATCAACTCATCTGCGTATGTCGCAATGGTGGTCACTGGAGCTGGGAAAGCTGGTGCAGTGCAGAAAGCACTTTCAGATAAGCAGACTTCGTCTGATTTGCTGCCTGTAG                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA753720             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AACTTGTCAAGAATGGTGTGATTGCAATGTCGCAATCGACTGGGTTTCCTAGGTTTGATGTCATGCTCCTGGGAATGGGCCCTGATGGCCATATTGCATCTCTTTTCCCAGGCCACCCTCTTGTTAATGAAAACAAGAAGTGGGTCACCTACATCAAGGATTCTCCAAAGCCACCACCTGAGAGAATNACGTNTACATTTCCTGTGATCAACTCATCTGCGTATGTCGCAATGGTGGTCACTGGAGCTGGGAAAGCTGGTGCAGTGCAGAAAGCACTTTCAGATAAGCAGACTTCGTCTGATTTGCTGCCTGTAGAAATGGCTGTACTTCAAGATGGGGAATNCACTTGGTTCACTGACAAGCCAGCAGTGTCAATGTTACAGAACAAATGAGGTCCATGCCTGGATATTGTTTAAGCTTTCATCTTAAATAAAGATCCAGGGGCCAATCCCAGCCTGGATACT                                                                                                                                                                                                         ]
[+] EMBL BI813764             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  cTGTTAATGAAAAC AGAAGTGGGTCA CTACATCAAGGATTCTCCAAAGCCACCACCTGAGAGAATTACGTTTACATTTCCTGTGATCAACTCATCTGCGTATGTCGCAATGGTGGTCACCCGAGCTGGGAAAGCTGGTGCAGTGCAGAAAGCACTTTCAGATAAGCAGACTTCGTCTGATTTGCTGCCTGTAGAAATGGCTGTACTTCAAGATGGGGAATTCACTTGGTTCACTGACAAGCCAGCAGTGTCAATGTTACAGAACAAATGAGGTCCATGCCTGGATATTGTTTAAGCTTTCATCTTAAATAAAGATCCAGGGGCTAATCCCAGCCTGGATACTGTTTAAGCTTTCAATCCCAAGCTGGGTTGTAATGATCTTCAGTCTAAAAAAGGATCCAGGTGACTGCATAGTTGCATTCCTCTTTTATGCATCACTTGTAAGGAAAACATGAGCATGTATGTTGTATGTTGTTCAGAGTGATGTATCTGAGACACTCCTGGTTTCGGCTTAGTAAATAACCTTTCCTGGCCAAAAAAAAAA]
[+] EMBL CA764164             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TACATCAAGGATTCTCCAAAGCCACCACCTGAGAGAATTACGTTTACATTTCCTGTGATCAACTCATCTGCGTATGTCGCAATGGTGGTCACTGGAGCTGGGAAAGCTGGTGCAGTGCAGAAAGCACTTTCAGATAAGCAGACTTCGTCTGATTTGCTGCCTGTAGAAATGGCTGTACTTCAAGATGGGGAATTCACTTGGTTCACTGACAAGCCAGCAGTGTCAATGTTACAGAACAAATGAGGTCCATGCCTGGATATTGTTTAAGCTTTCATCTTAAATAAAGATCCAGGGGCTAATCCCAGCCTGGATACTGTTTAAGCTTTCAATCCAAAGCTGGGTTGTAATGATCTTCAGTCTAAAAAAGGATCCAGGTGACTGCATAGTTGCATTCCTCTTTTATGCATCACTTGTAAGGAAAACATGAGCATGTATGTTGTATGTTGTTCAGAGTGATGTATCTGAGACACTCCTGGTTTCGGCTTAGTAAATAACCTTTCCTGGCCc         ]


>consensus_8376#0 CCGCCGTCGCCGCCGCCTCCACCTCCCGTACCCTCGTCCTCGCCCGCCACCGCTCGCCGC CGGCGTCTAGGGTCGCGGCGACAAGCCGCGGGCGTCCGTTCTCCTCCGGCCCCCATCCCC TCGCCGTCTCTCCCGCCACCCGCGCCCCCGCCATGGCCACCGACGGCGCCGCCGCCGCCG CCGCGGCAGGGTCGAAGAAGAAGAAGGAGGTGCTCATCTTCGACGCCGAGGAGGACCTCG CGGTGTCCCTGGCGAAGTACACGGCGGAGCTGTCCGCGAAGCTCGCCGCCGAGAGGGGCG CCTTCACCGTCGTGCTCTCCGGCGGATCCCTCATCAAGAACATCAGGAAGCTCGCGGAGC CACCGTACCTGGATTCGGTGGATTGGAGCAAGTGGCATGTGTTCTGGGTGGACGAGAGGG TGGTGCCCAAGGACCATGAGGATAGCAACTACAAGCTCGCCTTGGATGGGTTTCTCTCCA AGGTCCCAATTCCTACTGGCCAAGTTTATGCTATAAATGATGCCTTGTCAGCTGAGGGAG CAGCGGATGACTATGAAACTTGCTTGAAGCAACTTGTCAAGAATGGTGTGATTGCAATGT CGCAATCGACTGGGTTTCCTAGGTTTGATGTCATGCTCCTGGGAATGGGCCCTGATGGCC ATATTGCATCTCTTTTCCCAGGCCACCCTCTTGTTAATGAAAACAAGAAGTGGGTCACCT ACATCAAGGATTCTCCAAAGCCACCACCTGAGAGAATTACGTTTACATTTCCTGTGATCA ACTCATCTGCGTATGTCGCAATGGTGGTCACTGGAGCTGGGAAAGCTGGTGCAGTGCAGA AAGCACTTTCAGATAAGCAGACTTCGTCTGATTTGCTGCCTGTAGAAATGGCTGTACTTC AAGATGGGGAATTCACTTGGTTCACTGACAAGCCAGCAGTGTCAATGTTACAGAACAAAT GAGGTCCATGCCTGGATATTGTTTAAGCTTTCATCTTAAATAAAGATCCAGGGGCTAATC CCAGCCTGGATACTGTTTAAGCTTTCAATCCAAAGCTGGGTTGTAATGATCTTCAGTCTA AAAAAGGATCCAGGTGACTGCATAGTTGCATTCCTCTTTTATGCATCACTTGTAAGGAAA ACATGAGCATGTATGTTGTATGTTGTTCAGAGTGATGTATCTGAGACACTCCTGGTTTCG GCTTAGTAAATAACCTTTCCTGGCCAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)