These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1333 fasta sequence [TCCTTTCTCCGTGACCCGAGCACCCTGTGCGGCGGTGGCCTTGCAGTGACGGCGGCGCCTCCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCCCGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAAATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGGGTAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGG-AGTAT-GGT-GGTTGCTGCAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTG-CTTTCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTGAAGATTTGGAATGTTGATGGCTTCAAATTGGAAAAAACTTTAGTAGGTCACCAGCGTTGGGTTTGGGACTGCGTATTCTCAGTAGATGGTGCTTATTTGATAACTGCTTCCTCTGACACTACGGCGAGATTGTGGACGATGTCAACCGGAGAGGCAATCAGGGTTTACACGTCGCATCACAAACCAGTTGTCTGCTGTGCTCTTCATGACGGAGCTGAATCAGCACCATCATAAGCAGCCCCGTGCCTCAGGCATTTTGTACATACTCCAGTTTGAAAACATGTGAAGCTCTGAAAAATTTCAGCACTCTTAGGACCTTGAGGCCAAAGCAGCTGGCTTCATGTTGCTGTAGCACCTGATTGACAAATAATGTGCATGCGCAAGGTGGACAATTGATATGATTTATTAAGCGTCTCGGTTTTTAACAAAGTGCTCT] [+] EMBL AK111767 [TCCTTTCTCCGTGACCCGAGCACCCTGTGCGGCGGTGGCCTTGCAGTGACGGCGGCGCCTCCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCCCGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAAATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGGGTAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGG AGTAT GGT GGTTGCTGCAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTG CTTTCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTGAAGATTTGGAATGTTGATGGCTTCAAATTGGAAAAAACTTTAGTAGGTCACCAGCGTTGGGTTTGGGACTGCGTATTCTCAGTAGATGGTGCTTATTTGATAACTGCTTCCTCTGACACTACGGCGAGATTGTGGACGATGTCAACCGGAGAGGCAATCAGGGTTTACACGTCGCATCACAAACCAGTTGTCTGCTGTGCTCTTCATGACGGAGCTGAATCAGCACCATCATAAGCAGCCCCGTGCCTCAGGCATTTTGTACATACTCCAGTTTGAAAACATGTGAAGCTCTGAAAAATTTCAGCACTCTTAGGACCTTGAGGCCAAAGCAGCTGGCTTCATGTTGCTGTAGCACCTGATTGACAAATAATGTGCATGCGCAAGGTGGACAATTGATATGATTTATTAAGCGTCTCGGTTTTTAACAAAGTGCTCT] [+] EMBL CA998355 [ ATCACTCAATAAAATTTTGGGAAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGGNAGTAT GGT GGTTGCTGNCAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTG CTTTCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTGAAGATTTGGA ] [+] EMBL C27645 [ GCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGG AGTAT GGT GGTTGCTGCAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTGNTTTTCCCCAGAGTTCTTTGACCCC ACAGGTACCTTGC ] [+] EMBL CF323907 [ TTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGG AGTATGGGTGGGTTGCTGCAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTG CTTTCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTGAAGATTTGGAATGTTGATGGCTTCAAATTGGAAAAAACTTTAGTAGGTCACCAGCGTTGGGTTTGGGACTGCGTATTCTCAGTAGATGGTGCTTATTTGATAACTGCTTCCTCTGACACTACGGCGAGATTGTGGACGATGTCAACCGGAGAGGCAATCAGGGTTTACACGTCGCATCACAAACCAGTTGTCTGCTGTGCTCTTCATGACGGAGCTGAATCAGCACC ] consensusID : consensus_8379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 851 fasta sequence [GGTGGCCTTGCAGTGACGGCGGCGCCTCCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCCCGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAAATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGGGAAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCCTGGAATTGCCGGTGGGTTATCTGACTTATTATTGCCTACTGGTTCTTGAATNTGCAGCTNNTATTTTTTTGGCCAGTGGAACTCGGTGGAAATTTTTTTTCTCGCATACTCTGATTAGACTAGCCTGCAGACAATCTCTAGCTGCTCTCATGCAGGTCACATATAGTCATCACCTGATNTCTCTATTCTGAATATCGATGCACATGGAAAGGTGAAAATCATATTTATAGTAACAGACCCATATACTGCTTAGCTAGGCTAATCTACGGTGGGGTGCGTATGCTCTATCAGACTATAAGGCTCCCCCACGAAAAGAAACGGCGGTGCCCCGCCACAGTTTTGTAGAAAAATTTGTTGATGGAATCGGTCAGGGCACAGGATGACACTCAT] [+] EMBL AW155173 [GGTGGCCTTGCAGTGACGGCGGCGCCTCCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCCCGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAAATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGGGAAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCCTGGAATTGCCGGTGGGTTATCTGACTTATTATTGCCTACTGGTTCTTGAATNTGCAGCTNNTATTTTTTTGGCCAGTGGAACTCGGTGGAAATTTTTTTTCTCGCATACTCTGATTAGACTAGCCTGCAGACAATCTCTAGCTGCTCTCATGCAGGTCACATATAGTCATCACCTGATNTCTCTATTCTGAATATCGATGCACATGGAAAGGTGAAAATCATATTTATAGTAACAGACCCATATACTGCTTAGCTAGGCTAATCTACGGTGGGGTGCGTATGCTCTATCAGACTATAAGGCTCCCCCACGAAAAGAAACGGCGGTGCCCCGCCACAGTTTTGTAGAAAAATTTGTTGATGGAATCGGTCAGGGCACAGGATGACACTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8379#0 TCCTTTCTCCGTGACCCGAGCACCCTGTGCGGCGGTGGCCTTGCAGTGACGGCGGCGCCT 60 consensus_8379#1 ---------------------------------GGTGGCCTTGCAGTGACGGCGGCGCCT 27 *************************** consensus_8379#0 CCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCC 120 consensus_8379#1 CCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCC 87 ************************************************************ consensus_8379#0 CGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAA 180 consensus_8379#1 CGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAA 147 ************************************************************ consensus_8379#0 ATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGG 240 consensus_8379#1 ATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGG 207 ************************************************************ consensus_8379#0 GTAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGC 300 consensus_8379#1 GAAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGC 267 * ********************************************************** consensus_8379#0 CTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTT 360 consensus_8379#1 CTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTT 327 ************************************************************ consensus_8379#0 TTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAAT 420 consensus_8379#1 TTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAAT 387 ************************************************************ consensus_8379#0 GTGATGGCTGTGGGATTCCATTG-TGATGGCAACTGGATGTATTCAGGTTCTGAGGATGG 479 consensus_8379#1 GTGATGGCTGTGGGATTCCATTGGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGG 447 *********************** ************************************ consensus_8379#0 TACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGC 539 consensus_8379#1 TACTGTGAGAATCCTGGAATTGC---CGGTGGGTTATC----------TGA----CTTAT 490 ************* *** **** * * ** ** *** * * consensus_8379#0 TGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAA 599 consensus_8379#1 TATTGCCTAC----TGGTTCT-----TGAATNTGC---AGCTNNTATTT----TTTTGGC 534 * ** ** ******* *** * **** *** * * * consensus_8379#0 CGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGA 659 consensus_8379#1 CAGTGGAACTCG---GTGGAAATT---TTTTTTCTCGCATA-CTCTGATT---------A 578 * * * ** **** * ** * * **** * ** *** * consensus_8379#0 GGTTGATACTGCTGTAAGATCCCTGACAG-TCATGTGGGATGGGAGTATGGTGGTTGCTG 718 consensus_8379#1 GACTAGC-CTGCAG-ACAATCTCTAGCTGCTCTCATGCAGGTCACATATAGTCATCACCT 636 * * **** * * *** ** * * ** ** *** ** * * consensus_8379#0 CAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCT 778 consensus_8379#1 GATNTCTCTATTCTGAATATC------GATGCACATGGAAAGGT-----GAAAATCATAT 685 * * * * ** * * ** ** *** ** *** * * consensus_8379#0 GCTTTG-AACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTGCTT 837 consensus_8379#1 TTATAGTAACAGACCCATATACTGCTTAGCTAGGCTAATC-TACGGTGGGGTGCGTATGC 744 * * *** ***** * *** * * * * * ** **** * consensus_8379#0 TCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTG 897 consensus_8379#1 TCTATCAGACTATAAGGCTCCCCCACGAAAA--GAAACGGCGGTGCCCCGCCACAGTTTT 802 ** * * * * ** ** * * * *** ** * ***** * * consensus_8379#0 AAGATTTGGAATGTTGATGGCTTCAAATTGGAAAAAACTTTAGTAGGTCACCAGCGTTGG 957 consensus_8379#1 GTAGAAAAATTTGTTGATGG-----AATCGGTCAGGGCAC-AGGATGACACTCAT----- 851 ********* *** ** * * ** * * *** consensus_8379#0 GTTTGGGACTGCGTATTCTCAGTAGATGGTGCTTATTTGATAACTGCTTCCTCTGACACT 1017 consensus_8379#1 ------------------------------------------------------------ consensus_8379#0 ACGGCGAGATTGTGGACGATGTCAACCGGAGAGGCAATCAGGGTTTACACGTCGCATCAC 1077 consensus_8379#1 ------------------------------------------------------------ consensus_8379#0 AAACCAGTTGTCTGCTGTGCTCTTCATGACGGAGCTGAATCAGCACCATCATAAGCAGCC 1137 consensus_8379#1 ------------------------------------------------------------ consensus_8379#0 CCGTGCCTCAGGCATTTTGTACATACTCCAGTTTGAAAACATGTGAAGCTCTGAAAAATT 1197 consensus_8379#1 ------------------------------------------------------------ consensus_8379#0 TCAGCACTCTTAGGACCTTGAGGCCAAAGCAGCTGGCTTCATGTTGCTGTAGCACCTGAT 1257 consensus_8379#1 ------------------------------------------------------------ consensus_8379#0 TGACAAATAATGTGCATGCGCAAGGTGGACAATTGATATGATTTATTAAGCGTCTCGGTT 1317 consensus_8379#1 ------------------------------------------------------------ consensus_8379#0 TTTAACAAAGTGCTCT 1333 consensus_8379#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||