These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 904 fasta sequence [TTTTTTTTTTTTGCCGAAACATCATCACTTTTTATTCATTCGTTTGCCGTAAGGGATATATCTAAAAAAAAGGGCAGTTCTTCGCGATATGTCTTCCCACACATGGCAATGCAAAGAACCCAAAACCGGTCGGAAA-CCCCCAAGCATTGGTCATCGTCGGCGCATATAATGCGCCCTGAG-AATGCTCATCTTATCACTGAAA-CTGTGACTGGGCTTCGCAAACAAACAGATGCAAATCATGTCACAACTTTGATCATAGGCCGTCAACAAGCTCAAGTTTGCTTATTGACAAGCGTCTACAAGTCCAAGGTAATGAGTTGATCATTTAGGAGCCTCCTTAGCGTCGATAGCAGCCTCCTCACCCATAGCAGTGAGAACAATGACGTTTGTGTCCTTGCCATCGTCGACAAAAAGCTTCTTGATCTTGTCGCCAACCTCACCATCGGGAATCTTGACGTCGTCCTTTGTGGCTCCGTCGTCAGTCATGAGGGAAAGGAAACCGTCGTCGGAAAGGTCGAGAAGCTGGTATTCCTGGCGACNAACGTTGGGAACATCCATGTTGTGGGTGGAGGGGCCAGAGATCTTCCAACTTCTTGCCGGTGAAAATGTCGATGGCGACCAAATGGACCTTGGCGTGGCCGTGCTTGCCGGTCTTGGAGGTGGTCATTTCGACAATCTTGNCAGGGCGCTGCTTGATGACGACGAAGCCGTTCTTCCTCAGAGCAGAACACTGCATGGGGTAGGTCTGAGAGGCACCGGCATCGGCGCTATCGAAGGTGTGCTCATGCTGCGCGTCGTTGTCCGCCATGGTGTTGAATGAGAGTCGAAGCGACGGGTGAGGAAGACGGTGGTGTCGGGTGCTGGGCAAGGAGCGGTGGGGAGGTAGACAGTATTTGGATCCCCC] [+] EMBL CA760321 [TTTTTTTTTTTTGCCGAAACATCATCACTTTTTATTCATTCGTTTGCCGTAAGGGATATATCTAAAAAAAAGGGCAGTTCTTCGCGATATGTCTTCCCACACATGGCAATGCAAAGAACCCAAAACCGGTCGGAAA CCCCCAAGCATTGGTCATCGTCGGCGCATATAATGCGCCCTGAG AATGCTCATCTTATCACTGAAA CTGTGACTGGGCTTCGCAAACAAACAGATGCAAATCATGTCACAACTTTGATCATAGGCCGTCAACAAGCTCAAGTTTGCTTATTGACAAGCGTCTACAAGTCCAAGGTAATGAGTTGATCATTTAGGAGCCTCCTTAGCGTCGATAGCAGCCTCCTCACCCATAGCAGTGAGAACAATGACGTTTGTGTCCTTGCCATCGTCGACAAAAAGCTTCTTGATCTTGTCGCCAACCTCACCATCGGGAATCTTGACGTCGTCCTTTGTGGCTCCGTCGTCAGTCATGAGGGAAAGGAAACCGTCGTCGGAAAGGTCGAGAAGCTGGTATTCCTGGCGACNAACGTTGGGAACATCCATGTTGTGGGTGGAGGGGCCAGAGATCTTCCAACTTCTTGCCGGTGAAAATGTCGATGGCGACCAAATGGACCTTGGCGTGGCCGTGCTTGCCGGTCTTGGAGGTGGTCATTTCGACAATCTTGNCAGGGCGCTGCTT ] [-] EMBL CA766525 [ caAAAGANCCCAAAACCGNTCGGAAACCCCCCAAGCATTGGTCATCGTCGGCGCATATAATGCGCCCTTAGAAATGCTCATCTTATCACTGAAACCTGTGACTGGGCTTCGCAANCAANCAGATGCAAATCATGTCACANCTTTGATCATAGGCCGTCANCAAGCTCAAGTTTGCTTGTTGACAAGCGTCTACGAGTCCAAGGTAATGAGTTGATCATTTAGGAGCCTCCTTAGCGTCGATAGCAGCCTCCTCACCCATAGCAGTGAGAACAATGACGTTTGTGTCCTTGCCATCGTCGACGAAGAGCTTCTTGATCTTGTCGCCAACCTCACCATCGGGAATCTTGACGTCGTCCTTTGTGGCTCCGTCGTCAGTCATGAGGGAAAGGAAACCGTCGTCGGAAAGGTCGAGAAGCTGGTATTCCTGGCGACGAACGTTGGGAACATCCATGTTGTGGGTGGAGGGG CAGAGATCTTCCAACTTCTTGCCGGTGAAAATGTCGATGGCGACCAAATGGACCTTGGCGTGGCCGTGCTTGCCGGTCTTGGAGGTGGTCATTTCGACGATCTTGCAAGGGCGCTGCTTGATGACGACGAAGCCGTTCTTCCTCAGAGCAGAACACTGCATGGGGTAGGTCTGAGAGGCACCGGCATCGGCGCTATCGAAGGTGTGCTCATGCTGCGCGTCGTTGTCCGCCATGGTGTTGAATGAGAGTCGAAGCGACGGGTGAGGAAGACGGTGGTGTCGGGTGCTGGGCAAGGAGCGGTGGGGAGGTAGACAGTATTTGGATCCCCC] consensusID : consensus_8380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence [AGAATTTTTTTTAGTCAGGGGCTGAGCCTGTTCCTTTGACTAGGACCTATATTACCCATGTTTGCGTCGGACAGATCACAATGGATAACACAAGGGACGCAATTGTGAACTTGTGCGTAACATGTCCCGTCGCAGTGATTTCTTTTCCTTTATCGTCGCTTCGTAGAATGACAAAGAACACGCCAGTGTCGTAGTAAAATTTCCTTCCCATTGGTACCAGCCTCAGCAACCCAGTTGAGTCACTCAAAGTTTGAGCTGGACGGCGTGGCCACTCGAAAATATCATGACAGGGAATCCGCGGATGCGCTGCTCAATTACTTGGCCTGGGTAGGAACCTCCTCACCCATAGCCTTGGTGACGACGATAAAGACTTCCTTGTTCTCGTCTTGCTGCTTAAGTTCGTGAAGGCGGCGAATCTCCTTGGCAACCTCCTCGGCCTTGTCAGATCCCTCGGGGAGCTTAATGTCCTCCCTCATCTCTCCGTTCGAGTCCATGAGCTGGAGGAAACCGTCACCCTCAATGTCGATAAGCTCAAAGGTCTCGTTGGTGACGTTGGGAACGTCCATGTTGTGGGTGGACGGGGAGAGATCTTCCAGCTTCTTGTTGGTGAAGATGTCGATGGCGACCAAGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTCGACATGTCGACGATCTTGCAAGGACGGCCCTTGATGACGACGTGACCACCCTTCCTCAGTGCAGAACACTGCAT-GGGGTAGGTCGTCGACGCGCCGGCGTCGGTCGAGTCGAAGGTGTGCTCATGCTGCTCGTCAGACATCTT] [+] EMBL CB662529 [AGAATTTTTTTTAGTCAGGGGCTGAGCCTGTTCCTTTGACTAGGACCTATATTACCCATGTTTGCGTCGGACAGATCACAATGGATAACACAAGGGACGCAATTGTGAACTTGTGCGTAACATGTCCCGTCGCAGTGATTTCTTTTCCTTTATCGTCGCTTCGTAGAATGACAAAGAACACGCCAGTGTCGTAGTAAAATTTCCTTCCCATTGGTACCAGCCTCAGCAACCCAGTTGAGTCACTCAAAGTTTGAGCTGGACGGCGTGGCCACTCGAAAATATCATGACAGGGAATCCGCGGATGCGCTGCTCAATTACTTGGCCTGGGTAGGAACCTCCTCACCCATAGCCTTGGTGACGACGATAAAGACTTCCTTGTTCTCGTCTTGCTGCTTAAGTTCGTGAAGGCGGCGAATCTCCTTGGCAACCTCCTCGGCCTTGTCAGATCCCTCGGGGAGCTTAATGTCCTCCCTCATCTCTCCGTTCGAGTCCATGAGCTGGAGGAAACCGTCACCCTCAATGTCGATAAGCTCAAAGGTCTCGTTGGTGACGTTGGGAACGTCCATGTTGTGGGTGGACGGGGAGAGATCTTCCAGCTTCTTGTTGGTGAAGATGTCGATGGCGACCAAGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTCGACATGTCGACGATCTTGCAAGGACGGCCCTTGATGACGACGTGACCACCCTTCCTCAGTGCAGAACACTGCAT GGGGTAGGTCGTCGACGCGCCGGCGTCGGTCGAGTCGAAGGTGTGCTCATGCTGCTCGTCAGACATCTT] [+] EMBL CB662530 [AGAATTTTTTTTAGTCAGGGGCTGAGCCTGTTAAACTGACTAGGACCTATATTACCCATGTTTGCGTCGGACAGATCACAATGGATAACACAAGGGACGCAATTGTGAACTTGTGCGTAACATGTCCCGTCGCAGTGATTTCTTTTCCTTTATCGTCGCTTCGTAGAATGACAAAGAACACGCCAGTGTCGTAGTAAAATTTCCTTCCCATTGGTACCAGCCTCAGCAACCCAGTTGAGTCACTCAAAGTTTGAGCTGGACGGCGTGGCCACTCGAAAATATCATGACAGGGAATCCGCGGATGCGCTGCTCAATTACTTGGCCTGGGTAGGAACCTCCTCACCCATAGCCTTGGTGACGACGATAAAGACTTCCTTGTTCTCGTCTTGCTGCTTAAGTTCGTGAAGGCGGCGAATCTCCTTGGCAACCTCCTCGGCCTTGTCAGATCCCTCGGGGAGCTTAATGTCCTCCCTCATCTCTCCGTTCGAGTCCATGAGCTGGAGGAAACCGTCACCCTCAATGTCGATAAGCTCAAAGGTCTCGTTGGTGACGTTGGGAACGTCCATGTTGTGGGTGGACGGGGAGAGATCTTCCAGCTTCTTGTTGGTGAAGATGTCGATGGCGACCAAGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTCGACATGTCGACGATCTTGCAAGGACGGCCCTTGATGACGACGTGACCACCCTTCCTCAGTGCAGAACACTGCATGGGGGTAGGTCGTCAACGCGC ] consensusID : consensus_8380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [GTGTGTAGGATTGCGCATGCACGCTAAAAGGTCAAGCGTAGACAAACAAGACGATGCAAGATTCGTCGAACACGCTCACACGTGTGTGCGCGCGGACGAGTGCATCGCCCGCAAAGGCAGCGCGATGACAATTTTGGGGGACAAGATTTACTTGCCCTGGGGAGCATCCTTGAACGAGAGGCAGTGCTCCTCGCCCATGGCGGAGACGATGGTGACCATGAGGTCCTTGCCGTCGTCGAAGGCGGCCTGGATCTGCTCACCGAGCTCGCCGTCGGGGACACGGACGTCGTCCTTGGTGTCGCCGTCGTTGGTCATGAGGTTGAGGTAACCGTCGTCAATGTTGACGAGCTGGAACTCGTTACGGCTGACGTTGGGGACGTCCATGTTGTGGGTCGAGGGCGAGATGTCCTCGTACTTCTTCGAGGTGAAGATGTCGGTGGCGACAAGGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTGGACATGTCGATGATCTTGCAAGGGCGGCCCTTGATGACGACGTGACCGTTCTTACGCAGAGCAGAGCACTGCATGGGGAAGGTCAGCGAGGAGCCGGCATCGGCGGACTCGAAGGTGGCGTTGTGCTGCTCGTCGTCGGAGGCGGACATTTTGACTGATTAATCTACGG] [-] EMBL AK110635 [GTGTGTAGGATTGCGCATGCACGCTAAAAGGTCAAGCGTAGACAAACAAGACGATGCAAGATTCGTCGAACACGCTCACACGTGTGTGCGCGCGGACGAGTGCATCGCCCGCAAAGGCAGCGCGATGACAATTTTGGGGGACAAGATTTACTTGCCCTGGGGAGCATCCTTGAACGAGAGGCAGTGCTCCTCGCCCATGGCGGAGACGATGGTGACCATGAGGTCCTTGCCGTCGTCGAAGGCGGCCTGGATCTGCTCACCGAGCTCGCCGTCGGGGACACGGACGTCGTCCTTGGTGTCGCCGTCGTTGGTCATGAGGTTGAGGTAACCGTCGTCAATGTTGACGAGCTGGAACTCGTTACGGCTGACGTTGGGGACGTCCATGTTGTGGGTCGAGGGCGAGATGTCCTCGTACTTCTTCGAGGTGAAGATGTCGGTGGCGACAAGGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTGGACATGTCGATGATCTTGCAAGGGCGGCCCTTGATGACGACGTGACCGTTCTTACGCAGAGCAGAGCACTGCATGGGGAAGGTCAGCGAGGAGCCGGCATCGGCGGACTCGAAGGTGGCGTTGTGCTGCTCGTCGTCGGAGGCGGACATTTTGACTGATTAATCTACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8380#0 TTTTTTTTTTTTGCCGAAACATCATCACTTTTTATTCATTCGTTTGCCGTAAGGGATATA 60 consensus_8380#2 ------------------------------------------------------------ consensus_8380#1 ----------------------------AGAATTTTTTTTAGTCAGGGGCTGAGCCTGTT 32 consensus_8380#0 TCTAAAAAAAAGGGCAGTTCTTCGCGATATGTCTTCCCACACATGGCAATGCAAAGAACC 120 consensus_8380#2 ------------------------------------------------------------ consensus_8380#1 CCTTTGACTAGGACCTATATTACCCATGTTTGCGTCGGACAGATCACAATGGATAACACA 92 consensus_8380#0 CAAAAC-CGGTCGGAAACCCCCAAGCATTGGTCATCGTCGGCGC-ATATAATGCGCCCTG 178 consensus_8380#2 --------------------------------------------------GTGTG---TA 7 consensus_8380#1 AGGGACGCAATTGTGAACTTGTGCGTAACATGTCCCGTCGCAGTGATTTCTTTTCCTTTA 152 * * consensus_8380#0 AGAATGCTCATCTTATCACTGAAACTGTGACTGGGCTTCG-CAAACAAACAGATGCAAAT 237 consensus_8380#2 GGATTGCGCATGC--ACGCTAAAA----GGTCAAGCGTAGACAAACAAGACGATGCAAGA 61 consensus_8380#1 TCGTCGCTTCGTAGAATGACAAAG----AACACGCCAGTGTCGTAGTAAAATTTCCTTCC 208 ** ** * * * * * * * consensus_8380#0 CATGTC--ACAACTTTGATCATAGGC---CGTCAA-CAAGCTCAAGTTTGCTTATTGACA 291 consensus_8380#2 TTCGTCGAACACGCTCACACGTGTGTGCGCGCGGA-CGAGTGCATCGCCCGCAAAGGCAG 120 consensus_8380#1 CATTGGTACCAGCCTCAGCAACCCAGTTGAGTCACTCAAAGTTTGAGCTGGACGGCGTGG 268 ** * * * * * consensus_8380#0 AGCGTCTACAAGTCCAAGGTAATGAGTTGAT---CAT-TTAGGAGCCTCCTTAGCGTCGA 347 consensus_8380#2 CGCGATGACAATTTTGGGGGACAAGATTTACTTGCCC-TGGGGAGCATCCTT-GAACGAG 178 consensus_8380#1 CCACTCGAAAATATCATGACAGGGAATCCGCGGATGCGCTGCTCAATTACTTGGCCTGGG 328 * ** * * * * *** * consensus_8380#0 TAGCAGC-CTCCTCACCCATAGCAGTGAGAACAATGACGTTTGTGTCCTTGCCATCGTCG 406 consensus_8380#2 AGGCAGTGCTCCTCGCCCATGGCGGAGACGATGGTGACCATGAGGTCCTTGCCGTCGTCG 238 consensus_8380#1 TAGGAAC-CTCCTCACCCATAGCCTTGGTGACGACGATAAAGACTTCCTTGTTCTCGTCT 387 * * ****** ***** ** * * ** ****** ***** consensus_8380#0 ----------------ACAAAAAGCT-----TCTTGATCTTGTCGCCAACCTCACCA--- 442 consensus_8380#2 ----------------A-AGGCGGC-------CTGGATCTGCTCACCGAGCTCGCCG--- 271 consensus_8380#1 TGCTGCTTAAGTTCGTGAAGGCGGCGAATCTCCTTGGCAACCTCCTCGGCCTTGTCAGAT 447 * ** ** * ** * ** * consensus_8380#0 ---TCGGGAATCTTGACGTCGTCCTTTGTGGCTCCGTCGTCAGTCATGAGGGAAAGGAAA 499 consensus_8380#2 ---TCGGGGACACGGACGTCGTCCTTGGTGTCGCCGTCGTTGGTCATGAGGTTGAGGTAA 328 consensus_8380#1 CCCTCGGGGAGCTTAATGTCCTCCCTCATCTCTCCGTTCGAGTCCATGAGCTGGAGGAAA 507 ***** * * *** *** * * * **** ****** *** ** consensus_8380#0 CCGTCGTCGGAAAGGTCGAGAAGCTGGTATTCCTGGCGACNAACGTTGGGAACATCCATG 559 consensus_8380#2 CCGTCGTC---AATGTTGACGAGCTGGAACTCGTTACGGCTGACGTTGGGGACGTCCATG 385 consensus_8380#1 CCGTCACCCTCAATGTCGATAAGCTCAAAGGTCTCGTTGGTGACGTTGGGAACGTCCATG 567 ***** * ** ** ** **** * * ******** ** ****** consensus_8380#0 TTGTGGGTGGAGGGGCCAGAGATCTTCCAACTTCTTGCCGGTGAAAATGTCGATGGCGAC 619 consensus_8380#2 TTGTGGGTCGAGGG-CGAGATGTCCTCGTACTTCTTCGAGGTGAAGATGTCGGTGGCGAC 444 consensus_8380#1 TTGTGGGTGGACGG-GGAGAGATCTTCCAGCTTCTTGTTGGTGAAGATGTCGATGGCGAC 626 ******** ** ** *** ** ** ****** ****** ****** ******* consensus_8380#0 CAAATGGACCTTGGCGTGGCCGTGCTTGCCGGTCTTGGAGGTGGTCATTTCGACAATCTT 679 consensus_8380#2 AAGGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTGGACATGTCGATGATCTT 504 consensus_8380#1 CAAGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTCGACATGTCGACGATCTT 686 * ************** ***************** ***** * *** **** ***** consensus_8380#0 GNCAGGGCGCTGCTTGATGACGACGAAGCCGTTCTTCCTCAGAGCAGAACACTGCATGGG 739 consensus_8380#2 GCAAGGGCGGCCCTTGATGACGACGTGACCGTTCTTACGCAGAGCAGAGCACTGCATGGG 564 consensus_8380#1 GCAAGGACGGCCCTTGATGACGACGTGACCACCCTTCCTCAGTGCAGAACACTGCATGGG 746 * *** ** ************* ** *** * *** ***** *********** consensus_8380#0 GTAGGTCTGAGAGGCACCGGCATCGGCGCTATCGAAGGTGTGCTCATGCTGCGCGTCGTT 799 consensus_8380#2 GAAGGTCAGCGAGGAGCCGGCATCGGCGGACTCGAAGGTGGCGTTGTGCTGCTCGTCGTC 624 consensus_8380#1 GTAGGTCGTCGACGCGCCGGCGTCGGTCGAGTCGAAGGTGTGCTCATGCTGCTCGTCAGA 806 * ***** ** * ***** **** ********* * ****** **** consensus_8380#0 GTCCGCCATGGTGTTGAATGAGAGTCGAAGCGACGGGTGAGGAAGACGGTGGTGTCGGGT 859 consensus_8380#2 GGAGGCGGACATTTTGACTGA----TTAATCTACGG------------------------ 656 consensus_8380#1 CATCTT------------------------------------------------------ 812 consensus_8380#0 GCTGGGCAAGGAGCGGTGGGGAGGTAGACAGTATTTGGATCCCCC 904 consensus_8380#2 --------------------------------------------- consensus_8380#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||