|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 904 fasta sequence
[TTTTTTTTTTTTGCCGAAACATCATCACTTTTTATTCATTCGTTTGCCGTAAGGGATATATCTAAAAAAAAGGGCAGTTCTTCGCGATATGTCTTCCCACACATGGCAATGCAAAGAACCCAAAACCGGTCGGAAA-CCCCCAAGCATTGGTCATCGTCGGCGCATATAATGCGCCCTGAG-AATGCTCATCTTATCACTGAAA-CTGTGACTGGGCTTCGCAAACAAACAGATGCAAATCATGTCACAACTTTGATCATAGGCCGTCAACAAGCTCAAGTTTGCTTATTGACAAGCGTCTACAAGTCCAAGGTAATGAGTTGATCATTTAGGAGCCTCCTTAGCGTCGATAGCAGCCTCCTCACCCATAGCAGTGAGAACAATGACGTTTGTGTCCTTGCCATCGTCGACAAAAAGCTTCTTGATCTTGTCGCCAACCTCACCATCGGGAATCTTGACGTCGTCCTTTGTGGCTCCGTCGTCAGTCATGAGGGAAAGGAAACCGTCGTCGGAAAGGTCGAGAAGCTGGTATTCCTGGCGACNAACGTTGGGAACATCCATGTTGTGGGTGGAGGGGCCAGAGATCTTCCAACTTCTTGCCGGTGAAAATGTCGATGGCGACCAAATGGACCTTGGCGTGGCCGTGCTTGCCGGTCTTGGAGGTGGTCATTTCGACAATCTTGNCAGGGCGCTGCTTGATGACGACGAAGCCGTTCTTCCTCAGAGCAGAACACTGCATGGGGTAGGTCTGAGAGGCACCGGCATCGGCGCTATCGAAGGTGTGCTCATGCTGCGCGTCGTTGTCCGCCATGGTGTTGAATGAGAGTCGAAGCGACGGGTGAGGAAGACGGTGGTGTCGGGTGCTGGGCAAGGAGCGGTGGGGAGGTAGACAGTATTTGGATCCCCC]
[+] EMBL CA760321 [TTTTTTTTTTTTGCCGAAACATCATCACTTTTTATTCATTCGTTTGCCGTAAGGGATATATCTAAAAAAAAGGGCAGTTCTTCGCGATATGTCTTCCCACACATGGCAATGCAAAGAACCCAAAACCGGTCGGAAA CCCCCAAGCATTGGTCATCGTCGGCGCATATAATGCGCCCTGAG AATGCTCATCTTATCACTGAAA CTGTGACTGGGCTTCGCAAACAAACAGATGCAAATCATGTCACAACTTTGATCATAGGCCGTCAACAAGCTCAAGTTTGCTTATTGACAAGCGTCTACAAGTCCAAGGTAATGAGTTGATCATTTAGGAGCCTCCTTAGCGTCGATAGCAGCCTCCTCACCCATAGCAGTGAGAACAATGACGTTTGTGTCCTTGCCATCGTCGACAAAAAGCTTCTTGATCTTGTCGCCAACCTCACCATCGGGAATCTTGACGTCGTCCTTTGTGGCTCCGTCGTCAGTCATGAGGGAAAGGAAACCGTCGTCGGAAAGGTCGAGAAGCTGGTATTCCTGGCGACNAACGTTGGGAACATCCATGTTGTGGGTGGAGGGGCCAGAGATCTTCCAACTTCTTGCCGGTGAAAATGTCGATGGCGACCAAATGGACCTTGGCGTGGCCGTGCTTGCCGGTCTTGGAGGTGGTCATTTCGACAATCTTGNCAGGGCGCTGCTT ]
[-] EMBL CA766525 [ caAAAGANCCCAAAACCGNTCGGAAACCCCCCAAGCATTGGTCATCGTCGGCGCATATAATGCGCCCTTAGAAATGCTCATCTTATCACTGAAACCTGTGACTGGGCTTCGCAANCAANCAGATGCAAATCATGTCACANCTTTGATCATAGGCCGTCANCAAGCTCAAGTTTGCTTGTTGACAAGCGTCTACGAGTCCAAGGTAATGAGTTGATCATTTAGGAGCCTCCTTAGCGTCGATAGCAGCCTCCTCACCCATAGCAGTGAGAACAATGACGTTTGTGTCCTTGCCATCGTCGACGAAGAGCTTCTTGATCTTGTCGCCAACCTCACCATCGGGAATCTTGACGTCGTCCTTTGTGGCTCCGTCGTCAGTCATGAGGGAAAGGAAACCGTCGTCGGAAAGGTCGAGAAGCTGGTATTCCTGGCGACGAACGTTGGGAACATCCATGTTGTGGGTGGAGGGG CAGAGATCTTCCAACTTCTTGCCGGTGAAAATGTCGATGGCGACCAAATGGACCTTGGCGTGGCCGTGCTTGCCGGTCTTGGAGGTGGTCATTTCGACGATCTTGCAAGGGCGCTGCTTGATGACGACGAAGCCGTTCTTCCTCAGAGCAGAACACTGCATGGGGTAGGTCTGAGAGGCACCGGCATCGGCGCTATCGAAGGTGTGCTCATGCTGCGCGTCGTTGTCCGCCATGGTGTTGAATGAGAGTCGAAGCGACGGGTGAGGAAGACGGTGGTGTCGGGTGCTGGGCAAGGAGCGGTGGGGAGGTAGACAGTATTTGGATCCCCC]
consensusID : consensus_8380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence
[AGAATTTTTTTTAGTCAGGGGCTGAGCCTGTTCCTTTGACTAGGACCTATATTACCCATGTTTGCGTCGGACAGATCACAATGGATAACACAAGGGACGCAATTGTGAACTTGTGCGTAACATGTCCCGTCGCAGTGATTTCTTTTCCTTTATCGTCGCTTCGTAGAATGACAAAGAACACGCCAGTGTCGTAGTAAAATTTCCTTCCCATTGGTACCAGCCTCAGCAACCCAGTTGAGTCACTCAAAGTTTGAGCTGGACGGCGTGGCCACTCGAAAATATCATGACAGGGAATCCGCGGATGCGCTGCTCAATTACTTGGCCTGGGTAGGAACCTCCTCACCCATAGCCTTGGTGACGACGATAAAGACTTCCTTGTTCTCGTCTTGCTGCTTAAGTTCGTGAAGGCGGCGAATCTCCTTGGCAACCTCCTCGGCCTTGTCAGATCCCTCGGGGAGCTTAATGTCCTCCCTCATCTCTCCGTTCGAGTCCATGAGCTGGAGGAAACCGTCACCCTCAATGTCGATAAGCTCAAAGGTCTCGTTGGTGACGTTGGGAACGTCCATGTTGTGGGTGGACGGGGAGAGATCTTCCAGCTTCTTGTTGGTGAAGATGTCGATGGCGACCAAGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTCGACATGTCGACGATCTTGCAAGGACGGCCCTTGATGACGACGTGACCACCCTTCCTCAGTGCAGAACACTGCAT-GGGGTAGGTCGTCGACGCGCCGGCGTCGGTCGAGTCGAAGGTGTGCTCATGCTGCTCGTCAGACATCTT]
[+] EMBL CB662529 [AGAATTTTTTTTAGTCAGGGGCTGAGCCTGTTCCTTTGACTAGGACCTATATTACCCATGTTTGCGTCGGACAGATCACAATGGATAACACAAGGGACGCAATTGTGAACTTGTGCGTAACATGTCCCGTCGCAGTGATTTCTTTTCCTTTATCGTCGCTTCGTAGAATGACAAAGAACACGCCAGTGTCGTAGTAAAATTTCCTTCCCATTGGTACCAGCCTCAGCAACCCAGTTGAGTCACTCAAAGTTTGAGCTGGACGGCGTGGCCACTCGAAAATATCATGACAGGGAATCCGCGGATGCGCTGCTCAATTACTTGGCCTGGGTAGGAACCTCCTCACCCATAGCCTTGGTGACGACGATAAAGACTTCCTTGTTCTCGTCTTGCTGCTTAAGTTCGTGAAGGCGGCGAATCTCCTTGGCAACCTCCTCGGCCTTGTCAGATCCCTCGGGGAGCTTAATGTCCTCCCTCATCTCTCCGTTCGAGTCCATGAGCTGGAGGAAACCGTCACCCTCAATGTCGATAAGCTCAAAGGTCTCGTTGGTGACGTTGGGAACGTCCATGTTGTGGGTGGACGGGGAGAGATCTTCCAGCTTCTTGTTGGTGAAGATGTCGATGGCGACCAAGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTCGACATGTCGACGATCTTGCAAGGACGGCCCTTGATGACGACGTGACCACCCTTCCTCAGTGCAGAACACTGCAT GGGGTAGGTCGTCGACGCGCCGGCGTCGGTCGAGTCGAAGGTGTGCTCATGCTGCTCGTCAGACATCTT]
[+] EMBL CB662530 [AGAATTTTTTTTAGTCAGGGGCTGAGCCTGTTAAACTGACTAGGACCTATATTACCCATGTTTGCGTCGGACAGATCACAATGGATAACACAAGGGACGCAATTGTGAACTTGTGCGTAACATGTCCCGTCGCAGTGATTTCTTTTCCTTTATCGTCGCTTCGTAGAATGACAAAGAACACGCCAGTGTCGTAGTAAAATTTCCTTCCCATTGGTACCAGCCTCAGCAACCCAGTTGAGTCACTCAAAGTTTGAGCTGGACGGCGTGGCCACTCGAAAATATCATGACAGGGAATCCGCGGATGCGCTGCTCAATTACTTGGCCTGGGTAGGAACCTCCTCACCCATAGCCTTGGTGACGACGATAAAGACTTCCTTGTTCTCGTCTTGCTGCTTAAGTTCGTGAAGGCGGCGAATCTCCTTGGCAACCTCCTCGGCCTTGTCAGATCCCTCGGGGAGCTTAATGTCCTCCCTCATCTCTCCGTTCGAGTCCATGAGCTGGAGGAAACCGTCACCCTCAATGTCGATAAGCTCAAAGGTCTCGTTGGTGACGTTGGGAACGTCCATGTTGTGGGTGGACGGGGAGAGATCTTCCAGCTTCTTGTTGGTGAAGATGTCGATGGCGACCAAGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTCGACATGTCGACGATCTTGCAAGGACGGCCCTTGATGACGACGTGACCACCCTTCCTCAGTGCAGAACACTGCATGGGGGTAGGTCGTCAACGCGC ]
consensusID : consensus_8380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[GTGTGTAGGATTGCGCATGCACGCTAAAAGGTCAAGCGTAGACAAACAAGACGATGCAAGATTCGTCGAACACGCTCACACGTGTGTGCGCGCGGACGAGTGCATCGCCCGCAAAGGCAGCGCGATGACAATTTTGGGGGACAAGATTTACTTGCCCTGGGGAGCATCCTTGAACGAGAGGCAGTGCTCCTCGCCCATGGCGGAGACGATGGTGACCATGAGGTCCTTGCCGTCGTCGAAGGCGGCCTGGATCTGCTCACCGAGCTCGCCGTCGGGGACACGGACGTCGTCCTTGGTGTCGCCGTCGTTGGTCATGAGGTTGAGGTAACCGTCGTCAATGTTGACGAGCTGGAACTCGTTACGGCTGACGTTGGGGACGTCCATGTTGTGGGTCGAGGGCGAGATGTCCTCGTACTTCTTCGAGGTGAAGATGTCGGTGGCGACAAGGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTGGACATGTCGATGATCTTGCAAGGGCGGCCCTTGATGACGACGTGACCGTTCTTACGCAGAGCAGAGCACTGCATGGGGAAGGTCAGCGAGGAGCCGGCATCGGCGGACTCGAAGGTGGCGTTGTGCTGCTCGTCGTCGGAGGCGGACATTTTGACTGATTAATCTACGG]
[-] EMBL AK110635 [GTGTGTAGGATTGCGCATGCACGCTAAAAGGTCAAGCGTAGACAAACAAGACGATGCAAGATTCGTCGAACACGCTCACACGTGTGTGCGCGCGGACGAGTGCATCGCCCGCAAAGGCAGCGCGATGACAATTTTGGGGGACAAGATTTACTTGCCCTGGGGAGCATCCTTGAACGAGAGGCAGTGCTCCTCGCCCATGGCGGAGACGATGGTGACCATGAGGTCCTTGCCGTCGTCGAAGGCGGCCTGGATCTGCTCACCGAGCTCGCCGTCGGGGACACGGACGTCGTCCTTGGTGTCGCCGTCGTTGGTCATGAGGTTGAGGTAACCGTCGTCAATGTTGACGAGCTGGAACTCGTTACGGCTGACGTTGGGGACGTCCATGTTGTGGGTCGAGGGCGAGATGTCCTCGTACTTCTTCGAGGTGAAGATGTCGGTGGCGACAAGGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTGGACATGTCGATGATCTTGCAAGGGCGGCCCTTGATGACGACGTGACCGTTCTTACGCAGAGCAGAGCACTGCATGGGGAAGGTCAGCGAGGAGCCGGCATCGGCGGACTCGAAGGTGGCGTTGTGCTGCTCGTCGTCGGAGGCGGACATTTTGACTGATTAATCTACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8380#0 TTTTTTTTTTTTGCCGAAACATCATCACTTTTTATTCATTCGTTTGCCGTAAGGGATATA 60
consensus_8380#2 ------------------------------------------------------------
consensus_8380#1 ----------------------------AGAATTTTTTTTAGTCAGGGGCTGAGCCTGTT 32
consensus_8380#0 TCTAAAAAAAAGGGCAGTTCTTCGCGATATGTCTTCCCACACATGGCAATGCAAAGAACC 120
consensus_8380#2 ------------------------------------------------------------
consensus_8380#1 CCTTTGACTAGGACCTATATTACCCATGTTTGCGTCGGACAGATCACAATGGATAACACA 92
consensus_8380#0 CAAAAC-CGGTCGGAAACCCCCAAGCATTGGTCATCGTCGGCGC-ATATAATGCGCCCTG 178
consensus_8380#2 --------------------------------------------------GTGTG---TA 7
consensus_8380#1 AGGGACGCAATTGTGAACTTGTGCGTAACATGTCCCGTCGCAGTGATTTCTTTTCCTTTA 152
* *
consensus_8380#0 AGAATGCTCATCTTATCACTGAAACTGTGACTGGGCTTCG-CAAACAAACAGATGCAAAT 237
consensus_8380#2 GGATTGCGCATGC--ACGCTAAAA----GGTCAAGCGTAGACAAACAAGACGATGCAAGA 61
consensus_8380#1 TCGTCGCTTCGTAGAATGACAAAG----AACACGCCAGTGTCGTAGTAAAATTTCCTTCC 208
** ** * * * * * * *
consensus_8380#0 CATGTC--ACAACTTTGATCATAGGC---CGTCAA-CAAGCTCAAGTTTGCTTATTGACA 291
consensus_8380#2 TTCGTCGAACACGCTCACACGTGTGTGCGCGCGGA-CGAGTGCATCGCCCGCAAAGGCAG 120
consensus_8380#1 CATTGGTACCAGCCTCAGCAACCCAGTTGAGTCACTCAAAGTTTGAGCTGGACGGCGTGG 268
** * * * * *
consensus_8380#0 AGCGTCTACAAGTCCAAGGTAATGAGTTGAT---CAT-TTAGGAGCCTCCTTAGCGTCGA 347
consensus_8380#2 CGCGATGACAATTTTGGGGGACAAGATTTACTTGCCC-TGGGGAGCATCCTT-GAACGAG 178
consensus_8380#1 CCACTCGAAAATATCATGACAGGGAATCCGCGGATGCGCTGCTCAATTACTTGGCCTGGG 328
* ** * * * * *** *
consensus_8380#0 TAGCAGC-CTCCTCACCCATAGCAGTGAGAACAATGACGTTTGTGTCCTTGCCATCGTCG 406
consensus_8380#2 AGGCAGTGCTCCTCGCCCATGGCGGAGACGATGGTGACCATGAGGTCCTTGCCGTCGTCG 238
consensus_8380#1 TAGGAAC-CTCCTCACCCATAGCCTTGGTGACGACGATAAAGACTTCCTTGTTCTCGTCT 387
* * ****** ***** ** * * ** ****** *****
consensus_8380#0 ----------------ACAAAAAGCT-----TCTTGATCTTGTCGCCAACCTCACCA--- 442
consensus_8380#2 ----------------A-AGGCGGC-------CTGGATCTGCTCACCGAGCTCGCCG--- 271
consensus_8380#1 TGCTGCTTAAGTTCGTGAAGGCGGCGAATCTCCTTGGCAACCTCCTCGGCCTTGTCAGAT 447
* ** ** * ** * ** *
consensus_8380#0 ---TCGGGAATCTTGACGTCGTCCTTTGTGGCTCCGTCGTCAGTCATGAGGGAAAGGAAA 499
consensus_8380#2 ---TCGGGGACACGGACGTCGTCCTTGGTGTCGCCGTCGTTGGTCATGAGGTTGAGGTAA 328
consensus_8380#1 CCCTCGGGGAGCTTAATGTCCTCCCTCATCTCTCCGTTCGAGTCCATGAGCTGGAGGAAA 507
***** * * *** *** * * * **** ****** *** **
consensus_8380#0 CCGTCGTCGGAAAGGTCGAGAAGCTGGTATTCCTGGCGACNAACGTTGGGAACATCCATG 559
consensus_8380#2 CCGTCGTC---AATGTTGACGAGCTGGAACTCGTTACGGCTGACGTTGGGGACGTCCATG 385
consensus_8380#1 CCGTCACCCTCAATGTCGATAAGCTCAAAGGTCTCGTTGGTGACGTTGGGAACGTCCATG 567
***** * ** ** ** **** * * ******** ** ******
consensus_8380#0 TTGTGGGTGGAGGGGCCAGAGATCTTCCAACTTCTTGCCGGTGAAAATGTCGATGGCGAC 619
consensus_8380#2 TTGTGGGTCGAGGG-CGAGATGTCCTCGTACTTCTTCGAGGTGAAGATGTCGGTGGCGAC 444
consensus_8380#1 TTGTGGGTGGACGG-GGAGAGATCTTCCAGCTTCTTGTTGGTGAAGATGTCGATGGCGAC 626
******** ** ** *** ** ** ****** ****** ****** *******
consensus_8380#0 CAAATGGACCTTGGCGTGGCCGTGCTTGCCGGTCTTGGAGGTGGTCATTTCGACAATCTT 679
consensus_8380#2 AAGGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTGGACATGTCGATGATCTT 504
consensus_8380#1 CAAGTGGACCTTGGCGTGACCGTGCTTGCCGGTCTTCGAGGTCGACATGTCGACGATCTT 686
* ************** ***************** ***** * *** **** *****
consensus_8380#0 GNCAGGGCGCTGCTTGATGACGACGAAGCCGTTCTTCCTCAGAGCAGAACACTGCATGGG 739
consensus_8380#2 GCAAGGGCGGCCCTTGATGACGACGTGACCGTTCTTACGCAGAGCAGAGCACTGCATGGG 564
consensus_8380#1 GCAAGGACGGCCCTTGATGACGACGTGACCACCCTTCCTCAGTGCAGAACACTGCATGGG 746
* *** ** ************* ** *** * *** ***** ***********
consensus_8380#0 GTAGGTCTGAGAGGCACCGGCATCGGCGCTATCGAAGGTGTGCTCATGCTGCGCGTCGTT 799
consensus_8380#2 GAAGGTCAGCGAGGAGCCGGCATCGGCGGACTCGAAGGTGGCGTTGTGCTGCTCGTCGTC 624
consensus_8380#1 GTAGGTCGTCGACGCGCCGGCGTCGGTCGAGTCGAAGGTGTGCTCATGCTGCTCGTCAGA 806
* ***** ** * ***** **** ********* * ****** ****
consensus_8380#0 GTCCGCCATGGTGTTGAATGAGAGTCGAAGCGACGGGTGAGGAAGACGGTGGTGTCGGGT 859
consensus_8380#2 GGAGGCGGACATTTTGACTGA----TTAATCTACGG------------------------ 656
consensus_8380#1 CATCTT------------------------------------------------------ 812
consensus_8380#0 GCTGGGCAAGGAGCGGTGGGGAGGTAGACAGTATTTGGATCCCCC 904
consensus_8380#2 ---------------------------------------------
consensus_8380#1 ---------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||