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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1954 fasta sequence
[CACGCGCCTACCCGCACGCCGAGCTGTCGCCGCGTGTGCCCCCGCCTCGTTCCATCGCCTTCGCGTCGCGCTGTGCCCACTAAAACAATCCGGCCAGTTAACACTTCACACCCCCGCGCCCTCTCGTCCCCCTTCCTACGTGTCCCCCTCCCTGATCAAGAACGGATCACCGGCTCGGCGCCCCACTCTCTTCTTGGATCGGGGAGCGGGAGAGGGGGAGGAAGAGGCGGCGGATCAGAAGATTTGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGTGTGGGTGGGTGAGTGAGTGAGGAGTGATGGAGAAGGAGAGGAAGATGGAGGGGGAGAGGAGGGTGGAGGCGACGCGGCGGTGGGTGATCGCGGTGGGGTTCTGGGTGCAGGGGTTCCGGCTGTTCCCATGGCTGGGCGTCAACTTCTTCCTCAAGGACGGCATGGGCGTCGCCGCCTCCTCGCTGCAGATCCTCCAGGCGTCCGCCAACCTCCCCATGGTCGCCAAGCCGCTTCTCGGCCTCCTCTCCGACGCCGTCCCCATCCGCGGCCACCGCCGCCTCCCCTACGTCGCCATCGGCGCTCTCTTGCAGGCAATTTCATGGTTAGCAATTGCCCTCTGGCCAGCTATTTCTCTTCCAGTTCTTACCATTTTTCTCCTCTTGAGCAACTTTGGTGCATCCATATGTGAGGTTGCCAATGATGCCATTGTAGCAGAAGCTGGGAAGCAAGCAACCTTGTCCTCAGGGTCAGGTCAGCTTCAATCCTTTGCTTGGATGTTTGGTTCATCTGCTGGCGCTTTAGGAAATCTTGTTGGTGGCATTGCACTCAGTTACTTTTCTCCAAAAATCATGTTTCTGTTTTTTGCAATCCTTCTCGTGCTCCAGTTCTGCACTACTGTGGCTATACCTGAAAGCTCCCTCCAACTCCCAAAGGCAGATACTAATCTATCAGCTGTCTCCAGCGTCCGTAAGCAAATCAAAGAGCTGTCATATGCGCTGTGTATGCCTGAAATATTTTGGTCAGTCATTTGGTTTTCATTGTCCTATGCTGCCATACCATTTCTACTTGGGACCATGTTCTTCTATCAGACTGAAGTGTTAAGACTTGACTCATCAGTTATCGGTTTGTCCAAGGTTTTTGGACAAGTAACTCTATTAGCTTGGAGTGTGGCATACAACAAGTACTTCAAAACAACACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAGATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAATTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTCTTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTGCACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTT-TTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATCAAGTCTTGTTTCATGTAACTAGTATTC-TTTTGTGTATGCTAATCTGTTTTTTGTAGATGAAACAATATAAATGTTTTGTGCATCTTAAAAGTGTTGA]
[+] EMBL AK100484 [CACGCGCCTACCCGCACGCCGAGCTGTCGCCGCGTGTGCCCCCGCCTCGTTCCATCGCCTTCGCGTCGCGCTGTGCCCACTAAAACAATCCGGCCAGTTAACACTTCACACCCCCGCGCCCTCTCGTCCCCCTTCCTACGTGTCCCCCTCCCTGATCAAGAACGGATCACCGGCTCGGCGCCCCACTCTCTTCTTGGATCGGGGAGCGGGAGAGGGGGAGGAAGAGGCGGCGGATCAGAAGATTTGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGTGTGGGTGGGTGAGTGAGTGAGGAGTGATGGAGAAGGAGAGGAAGATGGAGGGGGAGAGGAGGGTGGAGGCGACGCGGCGGTGGGTGATCGCGGTGGGGTTCTGGGTGCAGGGGTTCCGGCTGTTCCCATGGCTGGGCGTCAACTTCTTCCTCAAGGACGGCATGGGCGTCGCCGCCTCCTCGCTGCAGATCCTCCAGGCGTCCGCCAACCTCCCCATGGTCGCCAAGCCGCTTCTCGGCCTCCTCTCCGACGCCGTCCCCATCCGCGGCCACCGCCGCCTCCCCTACGTCGCCATCGGCGCTCTCTTGCAGGCAATTTCATGGTTAGCAATTGCCCTCTGGCCAGCTATTTCTCTTCCAGTTCTTACCATTTTTCTCCTCTTGAGCAACTTTGGTGCATCCATATGTGAGGTTGCCAATGATGCCATTGTAGCAGAAGCTGGGAAGCAAGCAACCTTGTCCTCAGGGTCAGGTCAGCTTCAATCCTTTGCTTGGATGTTTGGTTCATCTGCTGGCGCTTTAGGAAATCTTGTTGGTGGCATTGCACTCAGTTACTTTTCTCCAAAAATCATGTTTCTGTTTTTTGCAATCCTTCTCGTGCTCCAGTTCTGCACTACTGTGGCTATACCTGAAAGCTCCCTCCAACTCCCAAAGGCAGATACTAATCTATCAGCTGTCTCCAGCGTCCGTAAGCAAATCAAAGAGCTGTCATATGCGCTGTGTATGCCTGAAATATTTTGGTCAGTCATTTGGTTTTCATTGTCCTATGCTGCCATACCATTTCTACTTGGGACCATGTTCTTCTATCAGACTGAAGTGTTAAGACTTGACTCATCAGTTATCGGTTTGTCCAAGGTTTTTGGACAAGTAACTCTATTAGCTTGGAGTGTGGCATACAACAAGTACTTCAAAACAACACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAGATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAATTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTCTTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTGCACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTT TTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATCAAGTCTTGTTTCATGTAACTAGTATTC TTTTGTGTATGCTAATCTGTTTTTTGTAGATGAAACAATATAAATGTTTTGTGCATCTTAAAAGTGTT ]
[-] EMBL CB679094 [ TATCAGACTGAAGTGTTAAGACTTGACTCATCAGTTATCGGTTTGTCCAAGGTTTTTGGACAAGTAACTCTATTAGCTTGGAGTGTGGCATACAACAAGTACTTCAAAACAACACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAGATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAATTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTCTTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTGCACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTT TTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTAGCATTCTTC ]
[-] EMBL CB679095 [ CGGTTTGTCCAAGGTTTTTGGACAAGTAACTCTATTAGCTGGGAGTGTGGCATACAACAAGTACTTCAAAACAACACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAGATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAATTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTCTTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTGCACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTT TTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATCAAGTCTTGTTTCATGTAACTAGTATTCTTTTTGTGTATGCTAATCTGTTTTTTGTAGATGAAACAATATAAATGTTTTGTGCATCTTAAAAaaaagga]
[+] EMBL BI801487 [ GCACTTGCCCTCGCAACTATCATCA CGGTTATCTT GGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTTGTTTCTCCTCATTGATAAAAGAGAGGAGAGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGA GTTGTACTGGTGCTCGTTATACTTTACAGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATAT AAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCATGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATTAAGTCTTGTTTCATGTAAaaaa ]
consensusID : consensus_8385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence
[ACGAGGCCGACTTGTCTGTNGATTGAAGCTGCATGCACAATGCTACCACTCTTTTTCTCCTCATTGATAAAAGAAAAGGAGACAAAAGGAGAAAAANGANNANTCCATTNCCCCTTTNGGATNCAANAAGGTTTTCCNGNTCCCCNTNNTCCTTNNCATNCNCCTTNGGNNTCNTTTGNATTNNCCAATATTCCGNTTCCNTATCCNAANCTTANTGNTG]
[+] EMBL BE228916 [ACGAGGCCGACTTGTCTGTNGATTGAAGCTGCATGCACAATGCTACCACTCTTTTTCTCCTCATTGATAAAAGAAAAGGAGACAAAAGGAGAAAAANGANNANTCCATTNCCCCTTTNGGATNCAANAAGGTTTTCCNGNTCCCCNTNNTCCTTNNCATNCNCCTTNGGNNTCNTTTGNATTNNCCAATATTCCGNTTCCNTATCCNAANCTTANTGNTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8385#0 CACGCGCCTACCCGCACGCCGAGCTGTCGCCGCGTGTGCCCCCGCCTCGTTCCATCGCCT 60
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TCGCGTCGCGCTGTGCCCACTAAAACAATCCGGCCAGTTAACACTTCACACCCCCGCGCC 120
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 CTCTCGTCCCCCTTCCTACGTGTCCCCCTCCCTGATCAAGAACGGATCACCGGCTCGGCG 180
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 CCCCACTCTCTTCTTGGATCGGGGAGCGGGAGAGGGGGAGGAAGAGGCGGCGGATCAGAA 240
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 GATTTGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGTGTGGGTGGGTGAGTG 300
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 AGTGAGGAGTGATGGAGAAGGAGAGGAAGATGGAGGGGGAGAGGAGGGTGGAGGCGACGC 360
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 GGCGGTGGGTGATCGCGGTGGGGTTCTGGGTGCAGGGGTTCCGGCTGTTCCCATGGCTGG 420
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 GCGTCAACTTCTTCCTCAAGGACGGCATGGGCGTCGCCGCCTCCTCGCTGCAGATCCTCC 480
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 AGGCGTCCGCCAACCTCCCCATGGTCGCCAAGCCGCTTCTCGGCCTCCTCTCCGACGCCG 540
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TCCCCATCCGCGGCCACCGCCGCCTCCCCTACGTCGCCATCGGCGCTCTCTTGCAGGCAA 600
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TTTCATGGTTAGCAATTGCCCTCTGGCCAGCTATTTCTCTTCCAGTTCTTACCATTTTTC 660
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TCCTCTTGAGCAACTTTGGTGCATCCATATGTGAGGTTGCCAATGATGCCATTGTAGCAG 720
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 AAGCTGGGAAGCAAGCAACCTTGTCCTCAGGGTCAGGTCAGCTTCAATCCTTTGCTTGGA 780
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TGTTTGGTTCATCTGCTGGCGCTTTAGGAAATCTTGTTGGTGGCATTGCACTCAGTTACT 840
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TTTCTCCAAAAATCATGTTTCTGTTTTTTGCAATCCTTCTCGTGCTCCAGTTCTGCACTA 900
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 CTGTGGCTATACCTGAAAGCTCCCTCCAACTCCCAAAGGCAGATACTAATCTATCAGCTG 960
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TCTCCAGCGTCCGTAAGCAAATCAAAGAGCTGTCATATGCGCTGTGTATGCCTGAAATAT 1020
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TTTGGTCAGTCATTTGGTTTTCATTGTCCTATGCTGCCATACCATTTCTACTTGGGACCA 1080
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TGTTCTTCTATCAGACTGAAGTGTTAAGACTTGACTCATCAGTTATCGGTTTGTCCAAGG 1140
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TTTTTGGACAAGTAACTCTATTAGCTTGGAGTGTGGCATACAACAAGTACTTCAAAACAA 1200
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 CACCTGCACAGAAGGTTTTATCAGTTCTGCAGTTTCTTACAGCACTCGTAATGCTGTCAG 1260
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 ATGTACTATTTGTTCAGGGAATATACAGAAACTTCGGAATACCGGATTCCATGTACACAA 1320
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TTGTTTTCTCAGGGTTGTTGGAGGGTCTTATGTTGTTCAAGGTGCTGCCCTTCAGTGTTC 1380
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 TTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTG 1440
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 CACTTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGG 1500
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 GAGTATCTGGAGGTGATTTCTCAGCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCA 1560
consensus_8385#1 -----------------------ACGAGGCCGACTTGTCTGTNGATTGAAGCTGCATGCA 37
** ************** ****** **********
consensus_8385#0 CAATGCTACCACTCTTTTTCTCCTCATTGATAAAAGAGA-GGAGAGAAAAGGAGAAGAAA 1619
consensus_8385#1 CAATGCTACCACTCTTTTTCTCCTCATTGATAAAAGAAAAGGAGACAAAAGGAGAAAAAN 97
************************************* * ***** ********** **
consensus_8385#0 GAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTAC 1679
consensus_8385#1 GANNANTCCATTNCCCCTTTNGGATNCAANAAGGTTTTCCNGNTCCCCNTNNTCCTTNNC 157
** * * * * * *** * **** * * ***** * * * * * * * * *** *
consensus_8385#0 AGTCATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCT 1739
consensus_8385#1 ATNCNCCTTNGGNNTCNTTTGNATTNNCCAATATTCCGNTTCCNTATCCNAANCTTAN-T 216
* * *** ** ** * ** *** ** *** * ** ** * ** * * * ** *
consensus_8385#0 GGTGGACACAATTTAAAAGACTAGGTTCCTCGAGAGGTTTTCAGTGTTTGTCGAGAATCA 1799
consensus_8385#1 GNTG-------------------------------------------------------- 220
* **
consensus_8385#0 TGTTCAGTGTAGATGGCATATTTGTACCTATATTTGTGTTACCATTCTTCTATAGATCAA 1859
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 GTCTTGTTTCATGTAACTAGTATTCTTTTGTGTATGCTAATCTGTTTTTTGTAGATGAAA 1919
consensus_8385#1 ------------------------------------------------------------
consensus_8385#0 CAATATAAATGTTTTGTGCATCTTAAAAGTGTTGA 1954
consensus_8385#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||