cluster # 8393

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Oryza sativa
cluster # 8393 cluster # 8393 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8393#0 length = 983 sequences # 2
consensus_8393#1 length = 544 sequences # 1

consensus_8393#2 length = 323 sequences # 1
consensus_8393#3 length = 291 sequences # 1

consensusID : consensus_8393#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 983
fasta sequence

                              [TCTTTTTATTTTTTTTGGAAACACGATCATACTCGCAAGAACCTTCATTTCTACAAAAACTGACACACACCGAAGACATGCTCTCTTTTGTATTACACCTTCACAAGAATACTAAACTGGTCGTGTTGATCTGACTGGCAAGGTCTTCCTGGGGATGCTCATGAACTTGGCAACAAATTCTTCCAGTTTCAACAGTGCACTTGCGCCAACGGGCAATCTCTTATCATAGTAGGCATGCCAATAATAAACCTCCCTCTTTATACTAGATTGGATTCCCTTCAAAAATAGCTCTGCAAGCTTCTGGAGTATTAGTTTAGGAGGTACAAATTCAACCAAGAGTTTCTGAAGCTTGCCTCTCACCAAAAATAACCTTTTAGGAGAAGGGTCATCCAATATTTCTGCAGCAATTTCCTGCAGAACATTCTCCCATCCTAATGGTATAGCTTGTCCATCAATGAAGGGGTAATTGTTGGCTTTGCATGCCTCCAAGGCCAATATTGCCT-CCCTCATGTTTTGCCTAGATTGACTTGCGATGGTAGCAGCAAAACTTGAAGGAAGATCAAAACTTTCTTTCTTTGATATGTAAGTAAGAATATCCACAATCTCGCGTGTATTGGGTACACCAATGCAAATAAGCTTGCAACGGCTCTTCATTGAATCGAGAATATGGGACTCGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAGAGGATGAATCAATCATCCATTTTATCAAACGTTGATTACTCTCACTAACTTTGTCAACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAGATGGATCGGTGGTTTTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCAAAACATATCCAGCATTCTTCGAATAATACCTCAAATTAAGCTCCATATGGTGATCACTAGATGACAAAGGGACAAGAACGGGCATAGATGTAGAACCCTGGCCACTGCAGCTCTTTCTACTCCTTC]

[+] EMBL CB672772             [TCTTTTTATTTTTTTTGGAAACACGATCATACTCGCAAGAACCTTCATTTCTACAAAAACTGACACACACCGAAGACATGCTCTCTTTTGTATTACACCTTCACAAGAATACTAAACTGGTCGTGTTGATCTGACTGGCAAGGTCTTCCTGGGGATGCTCATGAACTTGGCAACAAATTCTTCCAGTTTCAACAGTGCACTTGCGCCAACGGGCAATCTCTTATCATAGTAGGCATGCCAATAATAAACCTCCCTCTTTATACTAGATTGGATTCCCTTCAAAAATAGCTCTGCAAGCTTCTGGAGTATTAGTTTAGGAGGTACAAATTCAACCAAGAGTTTCTGAAGCTTGCCTCTCACCAAAAATAACCTTTTAGGAGAAGGGTCATCCAATATTTCTGCAGCAATTTCCTGCAGAACATTCTCCCATCCTAATGGTATAGCTTGTCCATCAATGAAGGGGTAATTGTTGGCTTTGCATGCCTCCAAGGCCAATATTGCCT CCCTCATGTTTTGCCTAGATTGACTTGCGATGGTAGCAGCAAAACTTGAAGGAAGATCAAAACTTTCTTTCTTTGATATGTAAGTAAGAATATCCACAATCTCGCGTGTATTGGGTACACCAATGCAAATAAGCTTGCAACGGCTCTTCATTGAATCGAGAATATGGGACTCGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAGAGGATGAATCAATCATCCATTTTATCAAACGTTGATTACTCTCACTAACTTTGTCAACATCATAGAGAACAATTACTT                                                                                                                                                                                                   ]
[-] EMBL CF312129             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGTCCATCAATGAAGGGGTAATTGTTGGCTTTGCATGCCTCCAAGGCCAATATTGCCTCCCCTCATGTTTTGCCTAGATTGACTTGCGATGGTAGCAGCAAAACTTGAAGGAAGATCAAAACTTTCTTTCTTTGATATGTAAGTAAGAATATCCACAATCTCGCGTGTATTGGGTACACCAATGCAAATAAGCTTGCAACGGCTCTTCATTGAATCGAGAATATGGGACTCGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAGAGGATGAATCAATCATCCATTTTATCAAACGTTGATTACTCTCACTAACTTTGTCAACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAGATGGATCGGTGGTTTTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCAAAACATATCCAGCATTCTTCGAATAATACCTCAAATTAAGCTCCATATGGTGATCACTAGATGACAAAGGGACAAGAACGGGCATAGATGTAGAACCCTGGCCACTGCAGCTCTTTCTACTCCTTC]




>consensus_8393#0
TCTTTTTATTTTTTTTGGAAACACGATCATACTCGCAAGAACCTTCATTTCTACAAAAAC
TGACACACACCGAAGACATGCTCTCTTTTGTATTACACCTTCACAAGAATACTAAACTGG
TCGTGTTGATCTGACTGGCAAGGTCTTCCTGGGGATGCTCATGAACTTGGCAACAAATTC
TTCCAGTTTCAACAGTGCACTTGCGCCAACGGGCAATCTCTTATCATAGTAGGCATGCCA
ATAATAAACCTCCCTCTTTATACTAGATTGGATTCCCTTCAAAAATAGCTCTGCAAGCTT
CTGGAGTATTAGTTTAGGAGGTACAAATTCAACCAAGAGTTTCTGAAGCTTGCCTCTCAC
CAAAAATAACCTTTTAGGAGAAGGGTCATCCAATATTTCTGCAGCAATTTCCTGCAGAAC
ATTCTCCCATCCTAATGGTATAGCTTGTCCATCAATGAAGGGGTAATTGTTGGCTTTGCA
TGCCTCCAAGGCCAATATTGCCTCCCTCATGTTTTGCCTAGATTGACTTGCGATGGTAGC
AGCAAAACTTGAAGGAAGATCAAAACTTTCTTTCTTTGATATGTAAGTAAGAATATCCAC
AATCTCGCGTGTATTGGGTACACCAATGCAAATAAGCTTGCAACGGCTCTTCATTGAATC
GAGAATATGGGACTCGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAGAGGATGAATC
AATCATCCATTTTATCAAACGTTGATTACTCTCACTAACTTTGTCAACATCATAGAGAAC
AATTACTTTGAATTTCTTTCTCACAGATGGATCGGTGGTTTTCTTCTTATTTGTAATTTC
ATTTGCCAAATCCATCAAAACATATCCAGCATTCTTCGAATAATACCTCAAATTAAGCTC
CATATGGTGATCACTAGATGACAAAGGGACAAGAACGGGCATAGATGTAGAACCCTGGCC
ACTGCAGCTCTTTCTACTCCTTC

consensusID : consensus_8393#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [TTTTTTTTGTACCATAAAAAGAAACGTTGGGCATTTTTTCTGGTCAAACACAAAAGGTACGTACACTTATTTCTTCCCGTACGTTACATTTCGAAGCCAGCTATGCATGGTTCGGTTCGTCGACTGTACCATACGTAGCATAAGTCCATAATTTGGTTTAAATTTGCTTTGCTCCGGATCCCACACTTCCAAAATGTAAACACGATCATACTCGCAAGAAACTTCATTTCTACAAAAACTGACACACACCGAAGACATGCTCTCTTTTGTATTACACCTTCACAAGAATACTAGACTGGTCGTGTTGATCTGACTGGCAAGGTCTTCCTGTGGATGCTCATGAACTTGGCAACAAATTCTTCCAGTTTCAACAGTGCACTTGCGCCAACGGGCAATCTCTTATCATAGTAGGCATGCCAATAATAAACCTCCCTCTTTATACTAGATTGGATTCCCTTCAGAAATAGCTCTGCAAGCTTCTGGAGTATTAGTGTTAGGAGGTACAAATTCAACCAAGAGTTTCTGAAGCTTGCCTCTCACCAAA]

[+] EMBL CF312130             [TTTTTTTTGTACCATAAAAAGAAACGTTGGGCATTTTTTCTGGTCAAACACAAAAGGTACGTACACTTATTTCTTCCCGTACGTTACATTTCGAAGCCAGCTATGCATGGTTCGGTTCGTCGACTGTACCATACGTAGCATAAGTCCATAATTTGGTTTAAATTTGCTTTGCTCCGGATCCCACACTTCCAAAATGTAAACACGATCATACTCGCAAGAAACTTCATTTCTACAAAAACTGACACACACCGAAGACATGCTCTCTTTTGTATTACACCTTCACAAGAATACTAGACTGGTCGTGTTGATCTGACTGGCAAGGTCTTCCTGTGGATGCTCATGAACTTGGCAACAAATTCTTCCAGTTTCAACAGTGCACTTGCGCCAACGGGCAATCTCTTATCATAGTAGGCATGCCAATAATAAACCTCCCTCTTTATACTAGATTGGATTCCCTTCAGAAATAGCTCTGCAAGCTTCTGGAGTATTAGTGTTAGGAGGTACAAATTCAACCAAGAGTTTCTGAAGCTTGCCTCTCACCAAA]




>consensus_8393#1
TTTTTTTTGTACCATAAAAAGAAACGTTGGGCATTTTTTCTGGTCAAACACAAAAGGTAC
GTACACTTATTTCTTCCCGTACGTTACATTTCGAAGCCAGCTATGCATGGTTCGGTTCGT
CGACTGTACCATACGTAGCATAAGTCCATAATTTGGTTTAAATTTGCTTTGCTCCGGATC
CCACACTTCCAAAATGTAAACACGATCATACTCGCAAGAAACTTCATTTCTACAAAAACT
GACACACACCGAAGACATGCTCTCTTTTGTATTACACCTTCACAAGAATACTAGACTGGT
CGTGTTGATCTGACTGGCAAGGTCTTCCTGTGGATGCTCATGAACTTGGCAACAAATTCT
TCCAGTTTCAACAGTGCACTTGCGCCAACGGGCAATCTCTTATCATAGTAGGCATGCCAA
TAATAAACCTCCCTCTTTATACTAGATTGGATTCCCTTCAGAAATAGCTCTGCAAGCTTC
TGGAGTATTAGTGTTAGGAGGTACAAATTCAACCAAGAGTTTCTGAAGCTTGCCTCTCAC
CAAA

consensusID : consensus_8393#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [AGATCAANNNTTNNNNNNNNNGATNNNNNAGTAAGAATATCCACAANCNCGCGTGTATTGGGTANNNCAATGCAAATANNNNNNCNACGGCNNNTCATTGAATCGAGAATATGGGACTCGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAGAGGATGAATCAATCATCCATTTTATCAAACGTTGATTACTCTCACTAACTTTGTCAACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAGATGGATCGGTGGTTTTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCAAAACATATCCAGCATTCTTCGA]

[-] EMBL CF196721             [AGATCAANNNTTNNNNNNNNNGATNNNNNAGTAAGAATATCCACAANCNCGCGTGTATTGGGTANNNCAATGCAAATANNNNNNCNACGGCNNNTCATTGAATCGAGAATATGGGACTCGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAGAGGATGAATCAATCATCCATTTTATCAAACGTTGATTACTCTCACTAACTTTGTCAACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAGATGGATCGGTGGTTTTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCAAAACATATCCAGCATTCTTCGA]




>consensus_8393#2
AGATCAANNNTTNNNNNNNNNGATNNNNNAGTAAGAATATCCACAANCNCGCGTGTATTG
GGTANNNCAATGCAAATANNNNNNCNACGGCNNNTCATTGAATCGAGAATATGGGACTCG
TCCTGGCAAGTCATTAATATCTTGTGTGTGTCAGAGGATGAATCAATCATCCATTTTATC
AAACGTTGATTACTCTCACTAACTTTGTCAACATCATAGAGAACAATTACTTTGAATTTC
TTTCTCACAGATGGATCGGTGGTTTTCTTCTTATTTGTAATTTCATTTGCCAAATCCATC
AAAACATATCCAGCATTCTTCGA

consensusID : consensus_8393#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [TGANAAGGTAAAGTAAAGAAATATCCCCCAATCTCGGCGTGTATTGGGGTNCACCAATGCCAAATAAGCTTGCAACGGCTCTTCATTGAATCGAGAATATGGGACTCGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAGAGGATGAATCAAATCATNCCATTTTATCAAACGTTGATTACTCTCACTAACTTTGTCAACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAGATGGATCGGTGGTTTTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCA]

[-] EMBL CA765904             [TGANAAGGTAAAGTAAAGAAATATCCCCCAATCTCGGCGTGTATTGGGGTNCACCAATGCCAAATAAGCTTGCAACGGCTCTTCATTGAATCGAGAATATGGGACTCGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAGAGGATGAATCAAATCATNCCATTTTATCAAACGTTGATTACTCTCACTAACTTTGTCAACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAGATGGATCGGTGGTTTTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCA]




>consensus_8393#3
TGANAAGGTAAAGTAAAGAAATATCCCCCAATCTCGGCGTGTATTGGGGTNCACCAATGC
CAAATAAGCTTGCAACGGCTCTTCATTGAATCGAGAATATGGGACTCGTCCTGGCAAGTC
ATTAATATCTTGTGTGTGTCAGAGGATGAATCAAATCATNCCATTTTATCAAACGTTGAT
TACTCTCACTAACTTTGTCAACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAG
ATGGATCGGTGGTTTTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      TCTTTTTATTTTTTTTGGAAACACGATCATACTCGCAAGAACCTTCATTTCTACAAAAAC 60
consensus_8393#1      ------------------------------------------------------------
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      TGACACACACCGAAGACATGCTCTCTTTTGTATTACACCTTCACAAGAATACTAAACTGG 120
consensus_8393#1      ------------------------------------------------------------
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      TCGTGTTGATCTGACTGGCAAGGTCTTCCTGGGGATGCTCATGAACTTGGCAACAAATTC 180
consensus_8393#1      ------------------------------------------------------------
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      TTCCAGTTTCAACAGTGCACTTGCGCCAACGGGCAATCTCTTATCATAGTAGGCATGCCA 240
consensus_8393#1      ------------------------------------------------------------
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      ATAATAAACCTCCCTCTTTATACTAGATTGGATTCCCTTCAAAAATAGCTCTGCAAGCTT 300
consensus_8393#1      ------------------------------------------------------------
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      CTGGAGTATTAGTTTAGGAGGTACAAATTCAACCAAGAGTTTCTGAAGCTTGCCTCTCAC 360
consensus_8393#1      ------------------------------------------------------------
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      CAAAAATAACCTTTTAGGAGAAGGGTCATCCAATATTTCTGCAGCAATTTCCTGCAGAAC 420
consensus_8393#1      ------------------------------------------------------------
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      ATTCTCCCATCCTAATGGTATAGCTTGTCCATCAATGAAGGGGTAATTGTTGGCTTTGCA 480
consensus_8393#1      ------------------------------------------------------------
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      TGCCTCCAAGGCCAATATTGCCTCCCTCATGTTTTGCCTAGATTGACTTGCGATGGTAGC 540
consensus_8393#1      --------------------------------------------------------TTTT 4
                                                                                  

consensus_8393#2      ----------------AGATCAANNNTTNNNNNNNNNGATNNNNNAGTAAGAATATCCAC 44
consensus_8393#3      -------------------------------TGANAAGGTAAAGTAAAGAAATATCCCCC 29
consensus_8393#0      AGCAAAACTTGAAGGAAGATCAAAACTTTCTTTCTTTGATATGTAAGTAAGAATATCCAC 600
consensus_8393#1      TTTTGTACCATAAAAAGAAACGTTGGGCATTTTTTCTGGTCAAACACAAAAGGTACGTAC 64
                                                           * *     *   *         *

consensus_8393#2      AANCNCG-CGTGTATTGGG-TANNN--CAATGC-AAATANNNNNNCNACGGCNNNTC-AT 98
consensus_8393#3      AATCTCGGCGTGTATTGGGGTNCAC--CAATGCCAAATAAGCTTGCAACGGCTCTTC-AT 86
consensus_8393#0      AATCTCG-CGTGTATTGGG-TACAC--CAATGC-AAATAAGCTTGCAACGGCTCTTC-AT 654
consensus_8393#1      ACTTATTTCTTCCCGTACGTTACATTTCGAAGCCAGCTATGCATGGTTCGGTTCGTCGAC 124
                      *       * *    *  * *      * * ** *  **         ***    ** * 

consensus_8393#2      TGAATCGAG---AATATGGGACT-CGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAG 154
consensus_8393#3      TGAATCGAG---AATATGGGACT-CGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAG 142
consensus_8393#0      TGAATCGAG---AATATGGGACT-CGTCCTGGCAAGTCATTAATATCTTGTGTGTGTCAG 710
consensus_8393#1      TGTACCATACGTAGCATAAGTCCATAATTTGGTTTAAATTTGCTTTGCTCCGGATCCCAC 184
                      ** * *      *  **  * *       ***       **  * *  *  *  *  ** 

consensus_8393#2      AGGATGAATCAA-TCATCC-ATTTTA-TCAAACGTTGATT-ACTCTCACTAACTTTGTCA 210
consensus_8393#3      AGGATGAATCAAATCATNCCATTTTA-TCAAACGTTGATT-ACTCTCACTAACTTTGTCA 200
consensus_8393#0      AGGATGAATCAA-TCATCC-ATTTTA-TCAAACGTTGATT-ACTCTCACTAACTTTGTCA 766
consensus_8393#1      ACTTCCAAAATGTAAACACGATCATACTCGCAAGAAACTTCATTTCTACAAAAACTGACA 244
                      *     **       *  * **  ** **  * *    ** * *   ** **   ** **

consensus_8393#2      -ACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAGA-----TGGATCGGTGGTT 264
consensus_8393#3      -ACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAGA-----TGGATCGGTGGTT 254
consensus_8393#0      -ACATCATAGAGAACAATTACTTTGAATTTCTTTCTCACAGA-----TGGATCGGTGGTT 820
consensus_8393#1      CACACCGAAGACATGCTCTCTTTTGTATTACACCTTCACAAGAATACTAGACTGGTCGTG 304
                       *** *  *** *     *  **** *** *    *****       * **  *** ** 

consensus_8393#2      TTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCAAAACATATCCA-GCATTCTTCGA 323
consensus_8393#3      TTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCA----------------------- 291
consensus_8393#0      TTCTTCTTATTTGTAATTTCATTTGCCAAATCCATCAAAACATATCCA-GCATTCTTCGA 879
consensus_8393#1      TTGATCTGACTGGCAAGGTCTTCCTGTGGATGCTCATGAACTTGGCAACAAATTCTTCCA 364
                      **  *** * * * **  ** *       ** *                           

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      ATAATACCTCAAATTAAGCTCCATATGGTGATCACTAGATGACAAAGGGACAAGAACGGG 939
consensus_8393#1      GTTTCAACAGTGCACTTGCGCCAACGGGCAATCTCTTATCATAGTAGGCATGCCAATAAT 424
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      CATAGATGTAGAACCCTGGCCACTGCAGCTCTTTCTACTCCTTC---------------- 983
consensus_8393#1      AAACCTCCCTCTTTATACTAGATTGGATTCCCTTCAGAAATAGCTCTGCAAGCTTCTGGA 484
                                                                                  

consensus_8393#2      ------------------------------------------------------------
consensus_8393#3      ------------------------------------------------------------
consensus_8393#0      ------------------------------------------------------------
consensus_8393#1      GTATTAGTGTTAGGAGGTACAAATTCAACCAAGAGTTTCTGAAGCTTGCCTCTCACCAAA 544