These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence [TTCGCCTGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGTATTTTGCAATGGTTAATTTACTTTTTCGTTGTTCGAGTGGGGGATTTGATTTGTGTTTTTGGTGTCGAGGACGGTGAAGATCGTATCTATTGGTCTCGTTCGTCGTAACTGGCAAATTGTTTTTGCCTTGCCGACCATCCTGATATATCACCACCCATATTCCGAGTCCTCTGTAACCAAATCAATTTTCGATTCCTCATGAGATCAGATCTTCTTTGGTGATTTTCTTTCGTTTGGCTCTTCTTTTGGATTCATTGTGCAGTTATATTGGCCGATGATTAGATTAAAATATAGACAAGCATATGTCTGAATTTTCATGTGGAAAAGCCTAATCTTCTCTATGAGGTCAGATTTATTGATGCATGTCATTGTGTTGTATTTTTCGTCATCTTTATCCTTTTCGTTTACTTTTGAGGCCTATGATGATCAATGTGGAAACCTTTCTCTCTGAAATCTTGTGAGGACATACCCTACTACTGCCTTCCTTCTGAGGTCTCTTATCATTGTTTGGATCTGACTAAAAATCTTATTTTGATTTTTGATATGGTTTTAAAAACTATGATTTTTTAAGAGGTTTGATGCCGATGTGGATGTAAATTGGTTGCAAGGTCGAGTGATGAGCAAAAATGCATAGTTCAGATGATCAAACCCTAGTGGTTATGATTACTTTGAATAAATAGTCTTTCGCTCCTAACTGACGGCCTTTACGCACCCATCTCAAAAACGGTTACTAAAGATTTATTTATTTT] [+] EMBL CB649568 [TTCGCCTGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGTATTTTGCAATGGTTAATTTACTTTTTCGTTGTTCGAGTGGGGGATTTGATTTGTGTTTTTGGTGTCGAGGACGGTGAAGATCGTATCTATTGGTCTCGTTCGTCGTAACTGGCAAATTGTTTTTGCCTTGCCGACCATCCTGATATATCACCACCCATATTCCGAGTCCTCTGTAACCAAATCAATTTTCGATTCCTCATGAGATCAGATCTTCTTTGGTGATTTTCTTTCGTTTGGCTCTTCTTTTGGATTCATTGTGCAGTTATATTGGCCGATGATTAGATTAAAATATAGACAAGCATATGTCTGAATTTTCATGTGGAAAAGCCTAATCTTCTCTATGAGGTCAGATTTATTGATGCATGTCATTGTGTTGTATTTTTCGTCATCTTTATCCTTTTCGTTTACTTTTGAGGCCTATGATGATCAATGTGGAAACCTTTCTCTCTGAAATCTTGTGAGGACATACCCTACTACTGCCTTCCTTCTGAGGTCTCTTATCATTGTTTGGATCTGACTAAAAATCTTATTTTGATTTTTGATATGGTTTTAAAAACTATGATTTTTTAAGAGGTTTGATGCCGATGTGGATGTAAATTGGTTGCAAGGTCGAGTGATGAGCAAAAATGCATAGTTCAGATGATCAAACCCTAGTGGTTATGATTACTTTGAATAAATAGTCTTTCGCTCCTAACTGACGGCCTTTACGCACCCATCTCAAAAACGGTTACTAAAGATTTATTTATTTT] [+] EMBL CB651064 [TTCGCATGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGTATTTTGCAATGGTTAATTTACTTTTTCGTTGTTCGAGTGGGGGATTTGATTTGTGTTTTTGGTGTCGAGGACGGTGAAGATCGTATCTATTGGTCTCGTTCGTCGTAACTGGCAAATTGTTTTTGCCTTGCCGACCATCCTGATATATCACCACCCATATTCCGAGTCCTCTGTAACCAAATCAATTTTCGATTCCTCATGAGATCAGATCTTCTTTGGTGATTTTCTTTCGTTTGGCTCTTCTTTTGGATTCATTGTGCAGTTATATTGGCCGATGATTAGATTAAAATATAGACAAGCATATGTCTGAATTTTCATGTGGAAAAGCCTAATCTTCTCTATGAGGTCAGATTTATTGATGCATGTCATTGTGTTGTATTTTTCGTCATCTTTATCCTTTTCGTTTACTTTTGAGGCCTATGATGATCAATGTGGAAACCTTTCTCTCTGAAATCTTGTGAGGACATACCCTACTACTGCCTTCCTTCTGAGGTCTCTTATCATTGTTTGGATCTGACTAAAAATCTTATTTTGATTTTTGATATGGTTTTAAAAACTATGATTTTTTAAGAGGTTTGATGCCGATGTGGATGTAAATTGGTTGCAAGGTCGAGTGATGAGCAAAAATGCATAGTTCAGATGATCAAACCCTAGTGGTTATGATTACTTTGAATAAATAGTCTTTCGCTCCTA ] consensusID : consensus_8399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [ACGCCGCTATCTACCTTCTTTCGCATGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGATCTAAATGCAGACTGGANGTGGATTGAAAATTGCGGCTGAAGAACGTGAACATTGAATGCAGACTGCTACATTCGCACTGTTTTGTATCAGTCCGTTAATTCTACAATATTTAGCTGTTTAGTAATTAAACAATGGTCCTGTCATCTTTTGTAACCTGTTAAGATTGATATTGAATAAATCATATTTGCGTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF298404 [ACGCCGCTATCTACCTTCTTTCGCATGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGATCTAAATGCAGACTGGANGTGGATTGAAAATTGCGGCTGAAGAACGTGAACATTGAATGCAGACTGCTACATTCGCACTGTTTTGTATCAGTCCGTTAATTCTACAATATTTAGCTGTTTAGTAATTAAACAATGGTCCTGTCATCTTTTGTAACCTGTTAAGATTGATATTGAATAAATCATATTTGCGTAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8399#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 241 fasta sequence [CTTAACAGGTTACAAAAGATGACAGGACCATTGTTTAATTACTAAACAGCTAAATATTGTAGAATTAACGGACTGATACAAAACAGTGCGAATGTAGCAGTCTGCATTCAATGTTCACGTTCTTCAGCCGCAATTTTCAATCCACAATCCAGTCTGCATTTAGATCCTGAAATTGAGAAAAAGTTTGACAGTTGGTAGTTTGAAAAAAAATTAAAGTTTATGTGATTGTGATGTGATGAAA] [+] EMBL CB651065 [CTTAACAGGTTACAAAAGATGACAGGACCATTGTTTAATTACTAAACAGCTAAATATTGTAGAATTAACGGACTGATACAAAACAGTGCGAATGTAGCAGTCTGCATTCAATGTTCACGTTCTTCAGCCGCAATTTTCAATCCACAATCCAGTCTGCATTTAGATCCTGAAATTGAGAAAAAGTTTGACAGTTGGTAGTTTGAAAAAAAATTAAAGTTTATGTGATTGTGATGTGATGAAA] [+] EMBL CB649569 [CTTAACAGGTTACAAAAGATGACAGGACCATTGTTTAATTACTAAACAGCTAAATATTGTAGAATTAACGGACTGATACAAAACAGTGCGAATGTAGCAGTCTGCATTCAATGTTCACGTTCTTCAGCCGCAATTTTCAATCCACAATCCAGTCTGCATTTAGATCCTGAAATTGAGAAAAAGTTTGACAGTTGGTAGTTTGAAAAAAAATTAGAGTTTATGTGATTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8399#0 -------------------TTCGCCTGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTC 41 consensus_8399#1 ACGCCGCTATCTACCTTCTTTCGCATGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTC 60 consensus_8399#2 ------------------------------------------------------------ consensus_8399#0 TCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGTA 101 consensus_8399#1 TCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGAT 120 consensus_8399#2 ----CTTAACAGGTTACAAAAGATGACAGGACCATTGTTTAATTACTAAACAGCTAAATA 56 ** * * * **** **** ** * ** * consensus_8399#0 TTTTGCAATGGTTAATTTACTTTTTCGTTGTTCGAGTGGGGGATTTGATTTGTGTTTTTG 161 consensus_8399#1 CTAAATGCAGACTGGANGTGGATTGAAAATTGCGGCTGAAGAACGTGAACATTGAA--TG 178 consensus_8399#2 TTGTAGAATTAACGGACTGATACAAAACAGTGCGAATGTAGCAGTCTGCATTCAATGTTC 116 * * ** ** * * * consensus_8399#0 GTGTCGAGGACGGTGAAGATCGTATCTATTGGTCTCGTTCGTCGTA-ACTGGCAAATTGT 220 consensus_8399#1 CAGACTGCTACATTCGCACTGTTTTGTATCAGTC-CGTTAATTCTACAATATTTAGCTGT 237 consensus_8399#2 ACGTTCTTCAGCCGCAATTTTCAATCCACAATCCAGTCTGCATTTAGATCCTGAAATTGA 176 * * * * * * * ** * * ** consensus_8399#0 TTT-TGCCTTGCCGACCATC---CTGATATATCACCACCCATATTCCGAGTCCTCTGTAA 276 consensus_8399#1 TTAGTAATTAAACAATGGTC---CTGTCATCTTTTGTAACCTGTTAAGATTGATAT-TGA 293 consensus_8399#2 GAAAAAGTTTGACAGTTGGTAGTTTGAAAAAAAATTAAAGTTTATGTGATTGTGATGTGA 236 * * ** * * * ** * * * * consensus_8399#0 CCAAATCAATTTTCGATTCCTCATGAGATCAGATCTTCTTTGGTGATTTTCTTTCGTTTG 336 consensus_8399#1 ATAAATCATATTTGCGTAAAAAAAAAAAAAAAAAAAAA---------------------- 331 consensus_8399#2 TGAAA------------------------------------------------------- 241 *** consensus_8399#0 GCTCTTCTTTTGGATTCATTGTGCAGTTATATTGGCCGATGATTAGATTAAAATATAGAC 396 consensus_8399#1 ------------------------------------------------------------ consensus_8399#2 ------------------------------------------------------------ consensus_8399#0 AAGCATATGTCTGAATTTTCATGTGGAAAAGCCTAATCTTCTCTATGAGGTCAGATTTAT 456 consensus_8399#1 ------------------------------------------------------------ consensus_8399#2 ------------------------------------------------------------ consensus_8399#0 TGATGCATGTCATTGTGTTGTATTTTTCGTCATCTTTATCCTTTTCGTTTACTTTTGAGG 516 consensus_8399#1 ------------------------------------------------------------ consensus_8399#2 ------------------------------------------------------------ consensus_8399#0 CCTATGATGATCAATGTGGAAACCTTTCTCTCTGAAATCTTGTGAGGACATACCCTACTA 576 consensus_8399#1 ------------------------------------------------------------ consensus_8399#2 ------------------------------------------------------------ consensus_8399#0 CTGCCTTCCTTCTGAGGTCTCTTATCATTGTTTGGATCTGACTAAAAATCTTATTTTGAT 636 consensus_8399#1 ------------------------------------------------------------ consensus_8399#2 ------------------------------------------------------------ consensus_8399#0 TTTTGATATGGTTTTAAAAACTATGATTTTTTAAGAGGTTTGATGCCGATGTGGATGTAA 696 consensus_8399#1 ------------------------------------------------------------ consensus_8399#2 ------------------------------------------------------------ consensus_8399#0 ATTGGTTGCAAGGTCGAGTGATGAGCAAAAATGCATAGTTCAGATGATCAAACCCTAGTG 756 consensus_8399#1 ------------------------------------------------------------ consensus_8399#2 ------------------------------------------------------------ consensus_8399#0 GTTATGATTACTTTGAATAAATAGTCTTTCGCTCCTAACTGACGGCCTTTACGCACCCAT 816 consensus_8399#1 ------------------------------------------------------------ consensus_8399#2 ------------------------------------------------------------ consensus_8399#0 CTCAAAAACGGTTACTAAAGATTTATTTATTTT 849 consensus_8399#1 --------------------------------- consensus_8399#2 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||