cluster # 8411

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Oryza sativa
cluster # 8411 cluster # 8411 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8411#0 length = 601 sequences # 3

consensus_8411#1 length = 439 sequences # 1
consensus_8411#2 length = 439 sequences # 1

consensusID : consensus_8411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 601
fasta sequence

                              [TGTGCCCTGAGCTTCAGATTTGCAGACCATACAAAGATGAAGGTCTCGACGGTGGCGGTGCTCGTTATGGTAGCGATGCTGATGATGTCGGTGGCTGTTTATTCTGACGATGCAAGTTCTCATGGAGTTACTGAAAAACAAGTTGCAGCTGCTGCAAACGCTCATGGAAGTAATGGAGGAAGCGTCGTCACAGAGGCAGCTAGTACTGATTCAACAGCTGGTGCCTCTGGTACTTCATCAGCTGGTGCCTCCGGTACTAATATTGATTCAAACTATTACGTGACTATGAAAGGGTACATGGAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCGTGTTTCTTCTGGGGCCTGCATATATATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTACCTAAATGTGCAAACAAAATGCGCATAGATGTATGCATTTCAGTATGGGGATGCGTTAAAGAGTGAGGTACCAAGTTTTTACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCTAAATAATCTCCAGCAGCCAACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGTTGTTGAATTAATATTATGC]

[+] EMBL AK060268             [TGTGCCCTGAGCTCAAAATTTGCAGACCATACAAAGATGAAGGTCTCGACGGTGGCGGTGCTCGTTATGGTGGCGATGCTGATGATGTCGGTGGCTGTTTATTCTGACGATGCAAGTTCTCATGGAGTTACTGAAAAACAAGTTGCAGCTGCTGCAAACGCTCATGGAAGTAATGGAGGAAGCGTCGTCACAGAGGCAGCTAGTACTGATTCAACAGCTGGTGCCTCTGGTACTTCATCAGCTGGTGCCTCCGGTACTAATATTGATTCAAACTATTACGTGACTATGAAAGGGTACATGGAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCGTGTTTCTTCTGGGGCCTGCATATATATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTACCTAAATGTGCAAACAAAATGCGCATAGACGTATGCATTTCAGTATGGGGATGCGTTGAAGAGTGAGGTACCAAG TTTTACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCTAAATAATCTCCAGCAGCCAACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGTTGTTGAATTAATATTATGC]
[-] EMBL CB965026             [       cGAGGTTCAGATTTTCAGACCATACTAAGATGAAGGTCTCGACGGTGTCGGTGCTCGTTATGGTATCGATGCTGATGATGTCGGTGTCTGTTTATTCTGACGATGCAAGTTCTCATGGAGTTACTGAAAAACAAGTTGCAGCTGCTGCAAACGCTCATGGAAGTAATGGAGGAAGCGTCGTCACAGAGGCAGCTAGTACTGATTCAACAGCTGGTGCCTCTGGTACTTCATCAGCTGGTGCCTCCGGTACTAATATTGATTCAAACTATTACGTGACTATGAAAGGGTACATGGAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCGTGTTTCTTCTGGGGCCTGCATATATATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTACCTAAATGTGCAAACAAAATGCGCATAGATGTATGCATTTCAGTATGGGGATGCGTTAAAGAGTGAGGTACCAAGTTTTTACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCTAAATAATCTCCAGCAGCCAACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGTTGTTGAATTAATATTA   ]
[-] EMBL BI306487             [             TCAGATTTGCAGACCATACAAAGATGAAGGTCTCGACGGTGGCGGTGCTCGTTATGGTAGCGATGCTGATGATGTCGGTGGCTGTTTATTCTGACGATGCAAGTTCTCATGGAGTTACTGAAAAACAAGTTGCAGCTGCTGCAAACGCTCATGGAAGTAATGGAGGAAGCGTCGTCACAGAGGCAGCTAGTACTGATTCAACAGCTGGTGCCTCTGGTACTTCATCAGCTGGTGCCTCCGGTACTAATATTGATTCAAACTATTACGTGACTATGAAAGGGTACATGGAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCGTGTTTCTTTTGGGGCCTGCAAAAAAATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTACCTAAATGTGCAAACAAAATGCGCATAGATGTATGCATTTCAGTATGGGGATGCGTTAAAGAGTGAGGTACCAAGTTTTTACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCTAAATAATCTCCAGCAGCCAACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGTTGTTGAATTAATATTA   ]




>consensus_8411#0
TGTGCCCTGAGCTTCAGATTTGCAGACCATACAAAGATGAAGGTCTCGACGGTGGCGGTG
CTCGTTATGGTAGCGATGCTGATGATGTCGGTGGCTGTTTATTCTGACGATGCAAGTTCT
CATGGAGTTACTGAAAAACAAGTTGCAGCTGCTGCAAACGCTCATGGAAGTAATGGAGGA
AGCGTCGTCACAGAGGCAGCTAGTACTGATTCAACAGCTGGTGCCTCTGGTACTTCATCA
GCTGGTGCCTCCGGTACTAATATTGATTCAAACTATTACGTGACTATGAAAGGGTACATG
GAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCGTGTTTCTTCTGGGGCCTGC
ATATATATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTACCTAAATGTGCAAACAAAAT
GCGCATAGATGTATGCATTTCAGTATGGGGATGCGTTAAAGAGTGAGGTACCAAGTTTTT
ACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCTAAATAATCTCCAGCAGCC
AACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGTTGTTGAATTAATATTATG
C

consensusID : consensus_8411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [TAGTGATTAGTGATCACTGATCAGTATCAGTACCATGTAAAAGAGTTTATGGAAGCTTAGCTTGATGCTCTCCTCGTGCCGAATTCGGCACGAGGCTAATATTGATTCAAACTATTACGTGACTATGAAAGGGTACATGGAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCGTGTTTCTTCTGGGGCCTGCATATATATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTACCTAAATGTGCAAACAAAATGCGCATAGATGTATGCATTTCAGTATGGGGATGCGTTGAAGAGTGAGGTACCAAGTTTTACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCTAAATAATCTCCAGCAGCCAACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGTTGTTGAATTAATATTATGC]

[+] EMBL CB680119             [TAGTGATTAGTGATCACTGATCAGTATCAGTACCATGTAAAAGAGTTTATGGAAGCTTAGCTTGATGCTCTCCTCGTGCCGAATTCGGCACGAGGCTAATATTGATTCAAACTATTACGTGACTATGAAAGGGTACATGGAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCGTGTTTCTTCTGGGGCCTGCATATATATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTACCTAAATGTGCAAACAAAATGCGCATAGATGTATGCATTTCAGTATGGGGATGCGTTGAAGAGTGAGGTACCAAGTTTTACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCTAAATAATCTCCAGCAGCCAACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGTTGTTGAATTAATATTATGC]




>consensus_8411#1
TAGTGATTAGTGATCACTGATCAGTATCAGTACCATGTAAAAGAGTTTATGGAAGCTTAG
CTTGATGCTCTCCTCGTGCCGAATTCGGCACGAGGCTAATATTGATTCAAACTATTACGT
GACTATGAAAGGGTACATGGAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCG
TGTTTCTTCTGGGGCCTGCATATATATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTAC
CTAAATGTGCAAACAAAATGCGCATAGATGTATGCATTTCAGTATGGGGATGCGTTGAAG
AGTGAGGTACCAAGTTTTACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCT
AAATAATCTCCAGCAGCCAACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGT
TGTTGAATTAATATTATGC

consensusID : consensus_8411#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [TAGTGATTAGTGATCACTGATCAGTATCAGTACCATGTAAAAGAGTTTATGGAAGCTTAGCTTGATGCTCTTCAGAAGTTGGCACCTCTTTTTACGGTCATCACTCTGATTCTCTGAATATCTTTGATCATCTAGTAGTTGTTCATTAGCATTTACTATCCCGCTACCTTTTCATGTCTTTGTTTTTGTCGTATTTTTTGCACCTTGTTTCTTAGGTAGTACTACTACTCTTAGCAAATTAAGAAATTGAAGTTAGTAAACGAATTTTCAGAGAACTTATCCAGGGTTGGCAAGGACATGATGGTTGAAATGGATCAGTGTTTGGTGGTTGGTGCATGCAGTGGTTTGTCTCGTGCTAGTATGTAGAACAGTAGAAGGNTGTATCTAGCAAGTTGGACTAGATTATTTTCTTTATAGACTATCAACTACCAATACCATT]

[+] EMBL CA766661             [TAGTGATTAGTGATCACTGATCAGTATCAGTACCATGTAAAAGAGTTTATGGAAGCTTAGCTTGATGCTCTTCAGAAGTTGGCACCTCTTTTTACGGTCATCACTCTGATTCTCTGAATATCTTTGATCATCTAGTAGTTGTTCATTAGCATTTACTATCCCGCTACCTTTTCATGTCTTTGTTTTTGTCGTATTTTTTGCACCTTGTTTCTTAGGTAGTACTACTACTCTTAGCAAATTAAGAAATTGAAGTTAGTAAACGAATTTTCAGAGAACTTATCCAGGGTTGGCAAGGACATGATGGTTGAAATGGATCAGTGTTTGGTGGTTGGTGCATGCAGTGGTTTGTCTCGTGCTAGTATGTAGAACAGTAGAAGGNTGTATCTAGCAAGTTGGACTAGATTATTTTCTTTATAGACTATCAACTACCAATACCATT]




>consensus_8411#2
TAGTGATTAGTGATCACTGATCAGTATCAGTACCATGTAAAAGAGTTTATGGAAGCTTAG
CTTGATGCTCTTCAGAAGTTGGCACCTCTTTTTACGGTCATCACTCTGATTCTCTGAATA
TCTTTGATCATCTAGTAGTTGTTCATTAGCATTTACTATCCCGCTACCTTTTCATGTCTT
TGTTTTTGTCGTATTTTTTGCACCTTGTTTCTTAGGTAGTACTACTACTCTTAGCAAATT
AAGAAATTGAAGTTAGTAAACGAATTTTCAGAGAACTTATCCAGGGTTGGCAAGGACATG
ATGGTTGAAATGGATCAGTGTTTGGTGGTTGGTGCATGCAGTGGTTTGTCTCGTGCTAGT
ATGTAGAACAGTAGAAGGNTGTATCTAGCAAGTTGGACTAGATTATTTTCTTTATAGACT
ATCAACTACCAATACCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8411#0      TGTGCCCTGAGCTTCAGATTTGCAGACCATACAAAGATGAAGGTCTCGACGGTGGCGGTG 60
consensus_8411#1      ------------------------------------------------------------
consensus_8411#2      ------------------------------------------------------------
                                                                                  

consensus_8411#0      CTCGTTATGGTAGCGATGCTGATGATGTCGGTGGCTGTTTATTCTGACGATGCAAGTTCT 120
consensus_8411#1      ------------------------------------------------------------
consensus_8411#2      ------------------------------------------------------------
                                                                                  

consensus_8411#0      CATGGAGTTACTGAAAAACAAGTTGCAGCTGCTGCAAACGCTCATGGAAGTAATGGAGGA 180
consensus_8411#1      ----------------------------TAGTGATTAGTGATCACTGA----TCAGTATC 28
consensus_8411#2      ----------------------------TAGTGATTAGTGATCACTGA----TCAGTATC 28
                                                    *     *  * ***  **       *    

consensus_8411#0      AGCGTCGTCACAGAGGCAGCTAGTACTGATTCAACAGCTGGTGCCTCTGGTACTTC-ATC 239
consensus_8411#1      AGTACCATGTAAAAG--AGTTTATGGAAGCTTAGCTTGATGCTCTCCTCGTGCCGA-ATT 85
consensus_8411#2      AGTACCATGTAAAAG--AGTTTATGGAAGCTTAGCTTGATGCTCTTCAGAAGTTGGCACC 86
                      **   * *   * **  ** *  *      * * *     *  *  *          *  

consensus_8411#0      AGCTGGTGCCTCCGGTACTAATATTGATTCAAACTATTACGTGACTATGAAAGGGTACAT 299
consensus_8411#1      CGGCA-------CGAGGCTAATATTGATTCAAACTATTACGTGACTATGAAAGGGTACAT 138
consensus_8411#2      TCTTTTTACGGTCATCACTCTGATTCTCTGAATATCTTTGATCATCTAGTAGTTGTTCAT 146
                                  *    **   ***   * **  * **   * *    * *   ** ***

consensus_8411#0      -GGAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCGTGTTTCTTCTGGGGCCT 358
consensus_8411#1      -GGAGTACATGAGGAAGTATGGCGGTAAACAACCCTGAGTTCGTGTTTCTTCTGGGGCCT 197
consensus_8411#2      TAGCATTTACTATCCCGC-TACCTTTTCATGTCTTTGTTTTTGTCGTATTTTTTGCACCT 205
                        *  *  *  *    *  *  *  *  *   *  **  ** **  *  ** * *  ***

consensus_8411#0      GCATATATATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTACCTAAATGTGCAAACAAA 418
consensus_8411#1      GCATATATATGTGTGTGCTTTCTATGTGTGTAAACCTTGGTACCTAAATGTGCAAACAAA 257
consensus_8411#2      TGTTTCTTAGGTA-GTACTACTACTCTTAGCAAATTAAGAAATTGAAGTTAGTAAACGAA 264
                         *   ** **  ** **     * *  * ***    *  *   ** *  * **** **

consensus_8411#0      ATGCGCATAGATGTATGCATTTCAGTATGGGGATGCGTTAAAGAGTGAGGTAC-CAAGTT 477
consensus_8411#1      ATGCGCATAGATGTATGCATTTCAGTATGGGGATGCGTTGAAGAGTGAGGTAC-CAAGTT 316
consensus_8411#2      -TTTTCAGAGA---ACTTATCCAGGGTTGGCAAGGACATGATGGTTGAAATGGATCAGTG 320
                       *   ** ***   *   **    *  ***  * *   * * *  ***  *     *** 

consensus_8411#0      TTTACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCTAAATAATCTCCAGCA 537
consensus_8411#1      TT-ACTGGTTGAAATCGTAAAACAACCTAAGTATTTCTCACATCTAAATAATCTCCAGCA 375
consensus_8411#2      TTTGGTGGTTGGTG-CATGCAGTGGTTTGTCTCGTGCTAGTATGTAGAACAGTAGAAGGN 379
                      **   ******    * *  *      *   *  * **   ** ** *  *     **  

consensus_8411#0      GCCAACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGTTGTTGAATTAATATT 597
consensus_8411#1      GCCAACTGTCATCATGTAATAATGCAGTGTAATGGTATTCTATGTTGTTGAATTAATATT 435
consensus_8411#2      TGTATCTAGCAAGTTGGACTAGATTATTTTCTTTATAGACTATCAACTACCAATACCATT 439
                         * **  **   ** * **    * * *  *  **  ****    *   * **  ***

consensus_8411#0      ATGC 601
consensus_8411#1      ATGC 439
consensus_8411#2      ----