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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1183 fasta sequence
[GAAAACTCTTTCGCCGACCTTCCCCACACGGCTTCACCCTAAGCCAGTGAGCCCAGGCGGCGGCGGCGGCGGGGCGGAATGGCGGAGCCGGACTGGATCCTGGAGAGGGAGCGGAGGCAGGTGGAGCAGATCCTGGAGCTTGACATGGAGGAGCTCCAGGTCGAGGAGGTCGACGACGCCGGCTCATCCTCCTCCTCCGAAGTCGACACCTTTCTCAGAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTGAGGTTCATGATGCCCCAGGCAGATTTGCTTTCTTGGATGGTGGTGTGGTTCTCTGTTTACCAATGTTTTATCTTCAAGGTGTTGTTTTGTTTCCTGAAGCTATCCTGCCTATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATAGGTGTGGTTCATGTTTATCAACACACTAATGATGGACACCATGCTATTGCTTCAGTTGGGACAACAGCGGAGATACATCACATTAAACAACTTGATGATGGCTCATCAAATGTTGTCACACGTGGTCAGAACCGTTTTCGCCTTAGACGCCGTTGGATCGATGCTGATGACGTTCAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCAAGAGATGCATTTGGCCAGTTAGCTACAAATTATATTTTCAACCAGTGTGGCACATCGTTACTCAGTTTGGGTACATCTTGTTTCAGACAAGATGATCATGTGAACTCTGATCAAGATTGGGATTCTCTATCATCCACTAGTACTTCAAGTGAACATTCAGTAACAGATGCAAGAACATACTGTTCCTCAAATGAAGATGAAGATCTCATGCTTGAACAGTCTTGGCAGAAGTATGATTCTGTGAAAAGAAATGCTGAATTAGAGAATCCAGTCAAGCATAGCAACACAAGAGGCAAGGGTGAACCTTGCTTTCAATCCCCAAAATCTTTACCAACAAAAAACAAAGGTGCTGAACAACGCAGGCGGTTCTGTGCTGCTTATAGTTCAAAGCTGGCATTGCAGGCTCCATTGTCATTTTGGCCTCGCTGGGCTTATGAAATGTACGATTCATATTCCCTTGCTCGCAGAG]
[+] EMBL AK102317 [GAAAACTCTTTCGCCGACCTTCCCCACACGGCTTCACCCTAAGCCAGTGAGCCCAGGCGGCGGCGGCGGCGGGGCGGAATGGCGGAGCCGGACTGGATCCTGGAGAGGGAGCGGAGGCAGGTGGAGCAGATCCTGGAGCTTGACATGGAGGAGCTCCAGGTCGAGGAGGTCGACGACGCCGGCTCATCCTCCTCCTCCGAAGTCGACACCTTTCTCAGAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTGAGGTTCATGATGCCCCAGGCAGATTTGCTTTCTTGGATGGTGGTGTGGTTCTCTGTTTACCAATGTTTTATCTTCAAGGTGTTGTTTTGTTTCCTGAAGCTATCCTGCCTATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATAGGTGTGGTTCATGTTTATCAACACACTAATGATGGACACCATGCTATTGCTTCAGTTGGGACAACAGCGGAGATACATCACATTAAACAACTTGATGATGGCTCATCAAATGTTGTCACACGTGGTCAGAACCGTTTTCGCCTTAGACGCCGTTGGATCGATGCTGATGACGTTCAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCAAGAGATGCATTTGGCCAGTTAGCTACAAATTATATTTTCAACCAGTGTGGCACATCGTTACTCAGTTTGGGTACATCTTGTTTCAGACAAGATGATCATGTGAACTCTGATCAAGATTGGGATTCTCTATCATCCACTAGTACTTCAAGTGAACATTCAGTAACAGATGCAAGAACATACTGTTCCTCAAATGAAGATGAAGATCTCATGCTTGAACAGTCTTGGCAGAAGTATGATTCTGTGAAAAGAAATGCTGAATTAGAGAATCCAGTCAAGCATAGCAACACAAGAGGCAAGGGTGAACCTTGCTTTCAATCCCCAAAATCTTTACCAACAAAAAACAAAGGTGCTGAACAACGCAGGCGGTTCTGTGCTGCTTATAGTTCAAAGCTGGCATTGCAGGCTCCATTGTCATTTTGGCCTCGCTGGGCTTATGAAATGTACGATTCATATTCCCTTGCTCGCAGAG]
[+] EMBL AK103798 [GAAAACTCTTTCGCCGACCTTCCCCACACGGCTTCACCCTAAGCCAGTGAGCCCAGGCGGCGGCGGCGGCGGGGCGGAATGGCGGAGCCGGACTGGATCCTGGAGAGGGAGCGGAGGCAGGTGGAGCAGATCCTGGAGCTTGACATGGAGGAGCTCCAGGTCGAGGAGGTCGACGACGCCGGCTCATCCTCCTCCTCCGAAGTCGACACCTTTCTCAGAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTGAGGTTCATGATGCCCCAGGCAGATTTGCTTTCTTGGATGGTGGTGTGGTTCTCTGTTTACCAATGTTTTATCTTCAAGGTGTTGTTTTGTTTCCTGAAGCTATCCTGCCTATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATAGGTGTGGTTCATGTTTATCAACACACTAATGATGGACACCATGCTATTGCTTCAGTTGGGACAACAGCGGAGATACATCACATTAAACAACTTGATGATGGCTCATCAAATGTTGTCACACGTGGTCAGAACCGTTTTCGCCTTAGACGCCGTTGGATCGATGCTGATGACGTTCAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCAAGAGATGCATTTGGCCAGTTAGCTACAAATTATATTTTCAACCAGTGTGGCACATCGTTACTCAGTTTGGGTACATCTTGTTTCAGACAAGATGATCATGTGAACTCTGATCAAGATTGGGATTCTCTATCATCCACTAGTACTTCAAGTGAACATTCAGTAACAGATGCAAGAACATACTGTTCCTCAAATGAAGATGAAGATCTCATGCTTGAACAGTCTTGGCAGAAGTATGATTCTGTGAAAAGAAATGCTGAATTAGAGAATCCAGTCAAGCATAGCAACACAAGAGGCAAGGGTGAACCTTGCTTTCAATCCCCAAAATCTTTACCAACAAAAAACAAAGGTGCTGAACAACGCAGGCGGTTCTGTGCTGCTTATAGTTCAAAGCTGGCATTGCAGGCTCCATTGTCATTTTGGCCTCGCTGGGCTTATGAAATGTACGATTCATATTCCCTTGCTCGCAGAG]
[+] EMBL CB629271 [ CGCCCACCTTCCCCACACGGCTTCACCCTAAGCCAGTGAGCCCGGGCGGCGGCGGCGGCGGGGCGGAATGGCGGAGCCGGACTGGATCCTGGAGAGGGAGCGGAGGCAGGTGGAGCAGATCCTGGAGCTTGACATGGAGGAGCTCCAGGTCGAGGAGGTCGACGACGCCGGCTCATCCTCCTCCTCCGACGTCGACACCTTTCTCAGAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTGAGGTTCATGATGCCCCAGGCAGATTTGCTTTCTTGGATGGTGGTGTGGTTCTCTGTTTACCAATGTTTTATCTTCAAGGTGTTGTTTTGTTTCCTGAAGCTATCCTGCCTATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATA GGTTCATGTTTACCAACACACTAATGATGGACACCATGCTATTGCTTCAGTTGGGACAACAGCGGAGATACATCACATTAAACAACTTGATGATGGCTCATCAAATGTTGTCACACGTGGTCAGAACCGTTTTCGCCTTAGACACCGTTGGATCGATGCTGATGACGTTCAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCAAGAGATGCATTTGGCCAGTTAGCTACAAATTATATTTTCAACCAGTGTGGCACATCGTTACTCAGTTT ]
[+] EMBL CA765963 [ cgagaCAA GGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCAAGAGATGCATTTGGCCAGTTAGCTACAAATTATATTTTCAACCAGTGTGGCACATCGTTACTCAGTTTGGGTACATCTTGTTTCAGACAAGATGATCATGTGAACTCTGATCAAGATTGGGATTCTCTATCATCCACTAGTACTTCAAGTGAACATTCAGTAACAGATGCAAGAACATACTGTTCCTCAAATGAAGATGAAGATCTCATGCTTGAACAGTCTTGGCAGAAGTATGATTCTGTGAAAAGAAATGCTGAATTAGAGAATCCAGTCAAGCATAGCAACACAAGAGGCAAGGGTGAACCTTGCTTTCAATCCCCAAAATCTTTACCAACAAAAAACAAAGGTGCTGAACAACGCAGGCGGTTCTGTGCTGCTTATAGTTCAAAGCTGGCATTGCAGGCTCCATTGTCATTTTGGCCTCGCTGGGCTTATGAAGTGTACGATTCATATTCCCTTGCTCGCAGAG]
consensusID : consensus_8413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence
[GGCCGAAGCGAAAGCCCGGGAGGAGGTGGAGGCCGGAAAACTCTTTCGCCGACCTTCCCCACACGGCTTCACCCTAAGCCAGTGAGCCCGGGCGGCGGCGGCGGCGGGGCGGAATGGCGGAGCCGGACTGGATCCTGGAGAGGGAGCGGAGGCAGGTGGAGCAGATCCTGGAGCTTGACATGGAGGAGCTCCAGGTCGAGGAGGTCGACGACGCCGGCTCATCCTCCTCCTCCGACGTCGACACCTTTCTCAGAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTGAGGTTCATGATGCCCCAGGCAGATTTGCTTTCTTGGATGGTGGTGTGGTTCTCTGTTTACCAATGTTTTATCTTCAAGTGTTGTTAGCTGATCCATGTCGTGCCTAATATTGAATGCTGAACTTGCTAAAGTTGTGTCCTATTGCAAACCAACAAAGTATACATGACATGTGTTGTTTTGTTTCCTGAAGCTATCCTGCCTATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATAGGTTCATGTTTACCAACACACTAATGATGGACACCATGCTATTGCTTCAGTTGGGACAACAGCGGAGATACATCACATTAAACAACTTGATGATGGCTCATCAAATGTTGTCACACGTGGTCAGAACCGTTTTCGCCTTAGACACCGTTGGATCGATGCTGATGACGTTCAATGGGGGTGAAGTAC]
[+] EMBL CB621200 [GGCCGAAGCGAAAGCCCGGGAGGAGGTGGAGGCCGGAAAACTCTTTCGCCGACCTTCCCCACACGGCTTCACCCTAAGCCAGTGAGCCCGGGCGGCGGCGGCGGCGGGGCGGAATGGCGGAGCCGGACTGGATCCTGGAGAGGGAGCGGAGGCAGGTGGAGCAGATCCTGGAGCTTGACATGGAGGAGCTCCAGGTCGAGGAGGTCGACGACGCCGGCTCATCCTCCTCCTCCGACGTCGACACCTTTCTCAGAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCATTCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTGAGGTTCATGATGCCCCAGGCAGATTTGCTTTCTTGGATGGTGGTGTGGTTCTCTGTTTACCAATGTTTTATCTTCAAGTGTTGTTAGCTGATCCATGTCGTGCCTAATATTGAATGCTGAACTTGCTAAAGTTGTGTCCTATTGCAAACCAACAAAGTATACATGACATGTGTTGTTTTGTTTCCTGAAGCTATCCTGCCTATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATAGGTTCATGTTTACCAACACACTAATGATGGACACCATGCTATTGCTTCAGTTGGGACAACAGCGGAGATACATCACATTAAACAACTTGATGATGGCTCATCAAATGTTGTCACACGTGGTCAGAACCGTTTTCGCCTTAGACACCGTTGGATCGATGCTGATGACGTTCAATGGGGGTGAAGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8413#0 -----------------------------------GAAAACTCTTTCGCCGACCTTCCCC 25
consensus_8413#1 GGCCGAAGCGAAAGCCCGGGAGGAGGTGGAGGCCGGAAAACTCTTTCGCCGACCTTCCCC 60
*************************
consensus_8413#0 ACACGGCTTCACCCTAAGCCAGTGAGCCCAGGCGGCGGCGGCGGCGGGGCGGAATGGCGG 85
consensus_8413#1 ACACGGCTTCACCCTAAGCCAGTGAGCCCGGGCGGCGGCGGCGGCGGGGCGGAATGGCGG 120
***************************** ******************************
consensus_8413#0 AGCCGGACTGGATCCTGGAGAGGGAGCGGAGGCAGGTGGAGCAGATCCTGGAGCTTGACA 145
consensus_8413#1 AGCCGGACTGGATCCTGGAGAGGGAGCGGAGGCAGGTGGAGCAGATCCTGGAGCTTGACA 180
************************************************************
consensus_8413#0 TGGAGGAGCTCCAGGTCGAGGAGGTCGACGACGCCGGCTCATCCTCCTCCTCCGAAGTCG 205
consensus_8413#1 TGGAGGAGCTCCAGGTCGAGGAGGTCGACGACGCCGGCTCATCCTCCTCCTCCGACGTCG 240
******************************************************* ****
consensus_8413#0 ACACCTTTCTCAGAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCAT 265
consensus_8413#1 ACACCTTTCTCAGAAACACTCATGGGGATGGAGGATCTAGAACTTCTGAAGCACTTGCAT 300
************************************************************
consensus_8413#0 TCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTGAGGTTCATGATGCCCCAGGCA 325
consensus_8413#1 TCAATACGTCTGTGGTTTCGCTGCCCACCTGTGATGGTGAGGTTCATGATGCCCCAGGCA 360
************************************************************
consensus_8413#0 GATTTGCTTTCTTGGATGGTGGTGTGGTTCTCTGTTTACCAATGTTTTATCTTCAAG--- 382
consensus_8413#1 GATTTGCTTTCTTGGATGGTGGTGTGGTTCTCTGTTTACCAATGTTTTATCTTCAAGTGT 420
*********************************************************
consensus_8413#0 ------------------------------------------------------------
consensus_8413#1 TGTTAGCTGATCCATGTCGTGCCTAATATTGAATGCTGAACTTGCTAAAGTTGTGTCCTA 480
consensus_8413#0 ----------------------------GTGTTGTTTTGTTTCCTGAAGCTATCCTGCCT 414
consensus_8413#1 TTGCAAACCAACAAAGTATACATGACATGTGTTGTTTTGTTTCCTGAAGCTATCCTGCCT 540
********************************
consensus_8413#0 ATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGAC 474
consensus_8413#1 ATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGAC 600
************************************************************
consensus_8413#0 GCTCCATGCATGATAGGTGTGGTTCATGTTTATCAACACACTAATGATGGACACCATGCT 534
consensus_8413#1 GCTCCATGCATGATAGGT-----TCATGTTTACCAACACACTAATGATGGACACCATGCT 655
****************** ********* ***************************
consensus_8413#0 ATTGCTTCAGTTGGGACAACAGCGGAGATACATCACATTAAACAACTTGATGATGGCTCA 594
consensus_8413#1 ATTGCTTCAGTTGGGACAACAGCGGAGATACATCACATTAAACAACTTGATGATGGCTCA 715
************************************************************
consensus_8413#0 TCAAATGTTGTCACACGTGGTCAGAACCGTTTTCGCCTTAGACGCCGTTGGATCGATGCT 654
consensus_8413#1 TCAAATGTTGTCACACGTGGTCAGAACCGTTTTCGCCTTAGACACCGTTGGATCGATGCT 775
******************************************* ****************
consensus_8413#0 GATGACGTTCAATGGGG-TGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCC 713
consensus_8413#1 GATGACGTTCAATGGGGGTGAAGTAC---------------------------------- 801
***************** ********
consensus_8413#0 AAGAGATGCATTTGGCCAGTTAGCTACAAATTATATTTTCAACCAGTGTGGCACATCGTT 773
consensus_8413#1 ------------------------------------------------------------
consensus_8413#0 ACTCAGTTTGGGTACATCTTGTTTCAGACAAGATGATCATGTGAACTCTGATCAAGATTG 833
consensus_8413#1 ------------------------------------------------------------
consensus_8413#0 GGATTCTCTATCATCCACTAGTACTTCAAGTGAACATTCAGTAACAGATGCAAGAACATA 893
consensus_8413#1 ------------------------------------------------------------
consensus_8413#0 CTGTTCCTCAAATGAAGATGAAGATCTCATGCTTGAACAGTCTTGGCAGAAGTATGATTC 953
consensus_8413#1 ------------------------------------------------------------
consensus_8413#0 TGTGAAAAGAAATGCTGAATTAGAGAATCCAGTCAAGCATAGCAACACAAGAGGCAAGGG 1013
consensus_8413#1 ------------------------------------------------------------
consensus_8413#0 TGAACCTTGCTTTCAATCCCCAAAATCTTTACCAACAAAAAACAAAGGTGCTGAACAACG 1073
consensus_8413#1 ------------------------------------------------------------
consensus_8413#0 CAGGCGGTTCTGTGCTGCTTATAGTTCAAAGCTGGCATTGCAGGCTCCATTGTCATTTTG 1133
consensus_8413#1 ------------------------------------------------------------
consensus_8413#0 GCCTCGCTGGGCTTATGAAATGTACGATTCATATTCCCTTGCTCGCAGAG 1183
consensus_8413#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||