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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1853 fasta sequence
[AGCTTTCCCCTCCCAATTAATTAAGTTTAGCTCTTATCAGAGCGAGAGAGAGAGAGAGAGAGGGAAGAAGAAGAAGTGGAAGTGGTATGTATGTGCCCATGTCCATTGCCGCAGAAACAAACTGTAGCAGCAGCAGCAGCAGCTAGTGAAGTACTACAGTACAGTAGTGAGGACTTAATCAAACGGGGCGCGCGGGGTGCCCCCTAGCTCTCCTCATTCCACCACCATGCCCACCCCGCCATCGCCATGCCTCTTCTTCCTCTTCCTCCTCTTCTTCATGTGGTCGTCTCACTCTCACCTTGGCGCCGCCTCCGACGCGGACGCGCTGCTCGCCCTCAAGTCCGCCCTCGACCGCTCCGACCGCCTCCCCTGGCGCCGCGACACCGCCCCCGCCTTGTGCTCCTCCTGGCTCGGCGTGCGCCAGTGCTCCCAACCTCCCCGGGACAGGAGGGTCACCAAGCTCGTCCTCGAGAACCTCAACCTCACCGGCGTCCTCACCGCCACCCTCCTCGCCCCGCTCTCCGAGCTGCGCGTCCTCAGCCTCAAGTCCAACGCCCTCACCGGCCCCATCCCCGACGCCCTCCCCGCCGCCCTCCCTAACCTCAAGCTGCTCTACCTCTCCGCCAACCGCCTCCAGGGCCGCATCCCGCCCACCCTCGCCCTCCTCCACCGCGCCACCGTCCTCGTCCTCTCCTCCAACCTCCTCCATGGCGCTGAGGGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAGCCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGCACTGGACGTCGTGCATGAAGATCGCGGAGGATGTCGCCGCCGGGCTGGTGCACCTGCACCAGTCGCCGCCGGCTGGCATCGTGCACGGCAACCTCAAGCCCTCCAACGTCCTCCTCGGCCCCGACTTCGAATCGTGCCTCACCGATTACGGTCTGGTGCCCACGCTGCTCCCCTCCCACGCCGATCTCGCCTCCTCCACGTCCGTCCTATACCGAGCGCCGGAAACTCGCACCGCCCATGCCTTCACGCCGGCGTCCGACGTGTACAGCTTCGGCGTGCTCCTCCTGGAGCTGCTCACCGGGAAGGCGCCGTTCCAGGACCTGATGGAGATGCACAGCGATGACATCCCGAGCTGGGTGCGGGCAGTGCGTGAGGAAGAGACGGAGTCCGGCGGGGAGTCCGCGTCCGCTGGCGGCACGGAGGAGAAGCTCGGTGCGCTGATCAGCATTGCGGCGGCCTGCGTGGTGGCGGACCCGGCGAGGCGGCCAACCACACCGGAGGTGCTACGGATGGTGAGGGAGGCAAGGGCGGAGGCAATGTCGTCGTCGAACAGCAGCGACCGGTCACCAGCGCGGTGGTCAGACGCCGTGCAGGTGCAGATGGGCATGGGGGTGCCG-CGAGATCAGGGAGAGCT-AGGAGGACTCA-CCTG-ATCG-ATCGATCAGC-AGC-TG-ATC-TCATCCTGATC-AGC-AGCTGATC-ATCGCCTGGC-TGGCCGGCTTGTTGTTACTTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTCAAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGACTTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGGTTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAAACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGGTTTATGTGTCAAAAA]
[+] EMBL AK101172 [AGCTTTCCCCTCCCAATTAATTAAGTTTAGCTCTTATCAGAGCGAGAGAGAGAGAGAGAGAGGGAAGAAGAAGAAGTGGAAGTGGTATGTATGTGCCCATGTCCATTGCCGCAGAAACAAACTGTAGCAGCAGCAGCAGCAGCTAGTGAAGTACTACAGTACAGTAGTGAGGACTTAATCAAACGGGGCGCGCGGGGTGCCCCCTAGCTCTCCTCATTCCACCACCATGCCCACCCCGCCATCGCCATGCCTCTTCTTCCTCTTCCTCCTCTTCTTCATGTGGTCGTCTCACTCTCACCTTGGCGCCGCCTCCGACGCGGACGCGCTGCTCGCCCTCAAGTCCGCCCTCGACCGCTCCGACCGCCTCCCCTGGCGCCGCGACACCGCCCCCGCCTTGTGCTCCTCCTGGCTCGGCGTGCGCCAGTGCTCCCAACCTCCCCGGGACAGGAGGGTCACCAAGCTCGTCCTCGAGAACCTCAACCTCACCGGCGTCCTCACCGCCACCCTCCTCGCCCCGCTCTCCGAGCTGCGCGTCCTCAGCCTCAAGTCCAACGCCCTCACCGGCCCCATCCCCGACGCCCTCCCCGCCGCCCTCCCTAACCTCAAGCTGCTCTACCTCTCCGCCAACCGCCTCCAGGGCCGCATCCCGCCCACCCTCGCCCTCCTCCACCGCGCCACCGTCCTCGTCCTCTCCTCCAACCTCCTCCATGGCGCTGAGGGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAGCCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGCACTGGACGTCGTGCATGAAGATCGCGGAGGATGTCGCCGCCGGGCTGGTGCACCTGCACCAGTCGCCGCCGGCTGGCATCGTGCACGGCAACCTCAAGCCCTCCAACGTCCTCCTCGGCCCCGACTTCGAATCGTGCCTCACCGATTACGGTCTGGTGCCCACGCTGCTCCCCTCCCACGCCGATCTCGCCTCCTCCACGTCCGTCCTATACCGAGCGCCGGAAACTCGCACCGCCCATGCCTTCACGCCGGCGTCCGACGTGTACAGCTTCGGCGTGCTCCTCCTGGAGCTGCTCACCGGGAAGGCGCCGTTCCAGGACCTGATGGAGATGCACAGCGATGACATCCCGAGCTGGGTGCGGGCAGTGCGTGAGGAAGAGACGGAGTCCGGCGGGGAGTCCGCGTCCGCTGGCGGCACGGAGGAGAAGCTCGGTGCGCTGATCAGCATTGCGGCGGCCTGCGTGGTGGCGGACCCGGCGAGGCGGCCAACCACACCGGAGGTGCTACGGATGGTGAGGGAGGCAAGGGCGGAGGCAATGTCGTCGTCGAACAGCAGCGACCGGTCACCAGCGCGGTGGTCAGACGCCGTGCAGGTGCAGATGGGCATGGGGGTGCCG CGAGATCAGGGAGAGCT AGGAGGACTCA CCTG ATCG ATCGATCAGC AGC TG ATC TCATCCTGATC AGC AGCTGATC ATCGCCTGGC TGGCCGGCTTGTTGTTACTTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTCAAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGACTTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGGTTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAAACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGG ]
[+] EMBL OSS4050A [ agnGAGAGAGAGAGAGAGAGAGAGAGGGAAGAAGAAGAAGTGGNAGTGGTATGTATGTNCCCATGNCCATTGCCGCAGNAACAAACTNTAGCAGCAGCAGCAGCAGCTAGTGAAGTACTACAGTACAGTAGTGAGGACTTAATCAAACGGGGNGCGCGGGGTGCCCCCTAGCTCTCCTCATTCCACCACC ]
[+] EMBL AU030457 [ ACACCGGAGGTGCTACGGATGGTGAGGGAGGCAAGGGCGGAGGCAATGTCGTCGTCGAACAGCAGCGACCGGTCACCAGCGCGGTGGTCAGACGCCGTGCAGGTGCAGATGGGCATGGGGGTGCCG CGAGATCAGGGAGAGCT AGGAGGACTCA CCTG ATCG ATCGATCAGC AGC TG ATC TCATCCTGATC AGC AGCTGATC ATCNCCTGGC TGGCCGGCTTGTTGTTACTTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTCAAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGACTTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGGTTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAAACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGGTTTATGTGTCAAAAA]
[+] EMBL AU161666 [ GGTTCCGCCGAGATCAGGGAGAGCTAAGGAGGACTCANCCTGAATCGAATCGATCAGCAAGCTTGAATCTTCATCCTGATCAAGCAAGCTGATCAATCGCCTGGCTTGGCCGGCTTGTTGTTACTTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTCAAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGACTTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGGTTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAAACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGGTTTATGTGTCAAA ]
consensusID : consensus_8417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence
[TNACNGTGAAGNGNATGCGNGAACCGGCGGCGNGGGCGGCGGACTTNGGCGGCGAGCGGAGGAGCTGGGCCGCCTCCGCCACCCAAACGTGGTGGCGCTGAGGGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAGCCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGC]
[+] EMBL AU065706 [TNACNGTGAAGNGNATGCGNGAACCGGCGGCGNGGGCGGCGGACTTNGGCGGCGAGCGGAGGAGCTGGGCCGCCTCCGCCACCCAAACGTGGTGGCGCTGAGGGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAGCCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8417#0 AGCTTTCCCCTCCCAATTAATTAAGTTTAGCTCTTATCAGAGCGAGAGAGAGAGAGAGAG 60
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 AGGGAAGAAGAAGAAGTGGAAGTGGTATGTATGTGCCCATGTCCATTGCCGCAGAAACAA 120
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 ACTGTAGCAGCAGCAGCAGCAGCTAGTGAAGTACTACAGTACAGTAGTGAGGACTTAATC 180
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 AAACGGGGCGCGCGGGGTGCCCCCTAGCTCTCCTCATTCCACCACCATGCCCACCCCGCC 240
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 ATCGCCATGCCTCTTCTTCCTCTTCCTCCTCTTCTTCATGTGGTCGTCTCACTCTCACCT 300
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 TGGCGCCGCCTCCGACGCGGACGCGCTGCTCGCCCTCAAGTCCGCCCTCGACCGCTCCGA 360
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 CCGCCTCCCCTGGCGCCGCGACACCGCCCCCGCCTTGTGCTCCTCCTGGCTCGGCGTGCG 420
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 CCAGTGCTCCCAACCTCCCCGGGACAGGAGGGTCACCAAGCTCGTCCTCGAGAACCTCAA 480
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 CCTCACCGGCGTCCTCACCGCCACCCTCCTCGCCCCGCTCTCCGAGCTGCGCGTCCTCAG 540
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 CCTCAAGTCCAACGCCCTCACCGGCCCCATCCCCGACGCCCTCCCCGCCGCCCTCCCTAA 600
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 CCTCAAGCTGCTCTACCTCTCCGCCAACCGCCTCCAGGGCCGCATCCCGCCCACCCTCGC 660
consensus_8417#1 -----------------TNACNGTGAAGNGNATGCGNGAACCGGCGGCGNGGGCGG-CGG 42
* * * ** * * * * * ** * **
consensus_8417#0 CCTCCTCCACCGCGCCACCGTCCTCGTCCTCTCCTCCAACCTC--CTCCATGGCGCTGAG 718
consensus_8417#1 ACTTNGGCGGCGAGCGGAGGAGCTGGGCCGCCTCCGCCACCCAAACGTGGTGGCGCTGAG 102
** * ** ** * ** * ** * * * *** * **********
consensus_8417#0 GGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAG 778
consensus_8417#1 GGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAG 162
************************************************************
consensus_8417#0 CCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGCA 838
consensus_8417#1 CCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGC- 221
***********************************************************
consensus_8417#0 CTGGACGTCGTGCATGAAGATCGCGGAGGATGTCGCCGCCGGGCTGGTGCACCTGCACCA 898
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 GTCGCCGCCGGCTGGCATCGTGCACGGCAACCTCAAGCCCTCCAACGTCCTCCTCGGCCC 958
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 CGACTTCGAATCGTGCCTCACCGATTACGGTCTGGTGCCCACGCTGCTCCCCTCCCACGC 1018
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 CGATCTCGCCTCCTCCACGTCCGTCCTATACCGAGCGCCGGAAACTCGCACCGCCCATGC 1078
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 CTTCACGCCGGCGTCCGACGTGTACAGCTTCGGCGTGCTCCTCCTGGAGCTGCTCACCGG 1138
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 GAAGGCGCCGTTCCAGGACCTGATGGAGATGCACAGCGATGACATCCCGAGCTGGGTGCG 1198
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 GGCAGTGCGTGAGGAAGAGACGGAGTCCGGCGGGGAGTCCGCGTCCGCTGGCGGCACGGA 1258
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 GGAGAAGCTCGGTGCGCTGATCAGCATTGCGGCGGCCTGCGTGGTGGCGGACCCGGCGAG 1318
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 GCGGCCAACCACACCGGAGGTGCTACGGATGGTGAGGGAGGCAAGGGCGGAGGCAATGTC 1378
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 GTCGTCGAACAGCAGCGACCGGTCACCAGCGCGGTGGTCAGACGCCGTGCAGGTGCAGAT 1438
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 GGGCATGGGGGTGCCGCGAGATCAGGGAGAGCTAGGAGGACTCACCTGATCGATCGATCA 1498
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 GCAGCTGATCTCATCCTGATCAGCAGCTGATCATCGCCTGGCTGGCCGGCTTGTTGTTAC 1558
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 TTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTC 1618
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 AAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGAC 1678
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 TTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGG 1738
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 TTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAA 1798
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 ACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGGTTTATGTGTCAAAAA 1853
consensus_8417#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||