These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1902 fasta sequence [GGCGGCAGCGAGCTAGCCAGCGGAGAGCTCCTCCAAGTGCAGAGTAGGGGTCCCTTCTCCGCCGCTCTGCTCACCATTTCCTCTCTCGTAGCCATGGCTCTCCTCCGCTGCCTCTTCCTCCTCGCCGTCCTTCTTCCCCACCGCAATGCCGCCGTCGTCGCCGCCGCGTCGCCGCACCACGGCCCCGCGCCGCACGACTACAGGGACGCGCTCACCAAGTCCATCCTCTTCTTCGAGGGCCAGCGCTCCGGGAAGCTGCCGCCGTCGCAGCGCGTCTCCTGGCGGGGTGACTCCGGCCTCTCCGACGGCTCCTCCATCAAGGTGGACTTGGTGGGAGGGTACTACGACGCCGGCGACAACATGAAGTTCGGGTCCCCGCTGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAGTTCGGTGGACTCATGAAGGGTGAGCTCCAGCACGCCAGGGACGCCGTCCGCTGGGGCTCCGACTACCTCCTCAAGGCCACCGCCCACCCGGACACCGTCTACGTCCAGGTCGGTGATGCCAACAGGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACACCGAGGACCGTGTACAAGGTCGACCCGAGCACCCCGGGCACCGACGTCGCGGCCGAGACCGCCGCGGCGCTCGCCGCCGCCTCGCTCGTCTTCCGCAAGTCCGACCCGGCCTACGCCAGCCGCCTCGTCGCCAGGGCCAAGAGGGTGTTTGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCGCCATACGTCTGCCCATACTACTGCTCCTACTCCGGGTACCAGGATGAGCTGCTGTGGGGGGCGGCATGGCTACACAGGGCGACCAAGAACCCGACGTACCTGAGCTACATCCAGATGAACGGGCAGGTGCTGGGCGCGGACGAGCAGGACAACACGTTCGGGTGGGACAACAAGCACGCCGGGGCGAGGATCCTGATCGCCAAGGCGTTCCTGGTGCAGAAGGTGGCGGCGCTGCACGAGTACAAGGGCCACGCCGACAGCTTCATCTGCTCCATGGTGCCCGGCACCCCCACGGACCAGACGCAGTACACCCGCGGCGGCCTCCTCTTCAAGCTCAGCGACAGCAACATGCAGTACGTCACCTCCAGCTCCTTCCTGCTGCTCACCTACGCCAAGTACCTCGCCTTCTCCAAGACCACCGTCTCCTGCGGCGGCGCCGCCGTCACGCCGGCCCGCCTCCGCGCCATCGCGCGCCAGCAGGTGGACTACCTGCTGGGGAGCAACCCGATGGGGATGTCGTACATGGTCGGGTACGGCGCCAAGTACCCGCGGAGGATCCACCACCGCGCGTCGTCGCTGCCGTCGGTGGCGGCGCACCCCGCCAGGATCGGCTGCTCGCAGGGGTTCACCGCGCTCTACTCCGGCGTCGCCAACCCCAACGTCCTCGTCGGCGCCGTCGTCGGAGGGCCCAACCTGCAGGACCAGTTCCCCGACCAGCGCAGCGACCACGAGCACTCCGAGCCGGCCACCTACATCAACGCGCCGCTCGTCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAACTGATTGCGAAATCAACAAGTGT] [+] EMBL AK106887 [GGCGGCAGCGAGCTAGCCAGCGGAGAGCTCCTCCAAGTGCAGAGTAGGGGTCCCTTCTCCGCCGCTCTGCTCACCATTTCCTCTCTCGTAGCCATGGCTCTCCTCCGCTGCCTCTTCCTCCTCGCCGTCCTTCTTCCCCACCGCAATGCCGCCGTCGTCGCCGCCGCGTCGCCGCACCACGGCCCCGCGCCGCACGACTACAGGGACGCGCTCACCAAGTCCATCCTCTTCTTCGAGGGCCAGCGCTCCGGGAAGCTGCCGCCGTCGCAGCGCGTCTCCTGGCGGGGTGACTCCGGCCTCTCCGACGGCTCCTCCATCAAGGTGGACTTGGTGGGAGGGTACTACGACGCCGGCGACAACATGAAGTTCGGGTCCCCGCTGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAGTTCGGTGGACTCATGAAGGGTGAGCTCCAGCACGCCAGGGACGCCGTCCGCTGGGGCTCCGACTACCTCCTCAAGGCCACCGCCCACCCGGACACCGTCTACGTCCAGGTCGGTGATGCCAACAGGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACACCGAGGACCGTGTACAAGGTCGACCCGAGCACCCCGGGCACCGACGTCGCGGCCGAGACCGCCGCGGCGCTCGCCGCCGCCTCGCTCGTCTTCCGCAAGTCCGACCCGGCCTACGCCAGCCGCCTCGTCGCCAGGGCCAAGAGGGTGTTTGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCGCCATACGTCTGCCCATACTACTGCTCCTACTCCGGGTACCAGGATGAGCTGCTGTGGGGGGCGGCATGGCTACACAGGGCGACCAAGAACCCGACGTACCTGAGCTACATCCAGATGAACGGGCAGGTGCTGGGCGCGGACGAGCAGGACAACACGTTCGGGTGGGACAACAAGCACGCCGGGGCGAGGATCCTGATCGCCAAGGCGTTCCTGGTGCAGAAGGTGGCGGCGCTGCACGAGTACAAGGGCCACGCCGACAGCTTCATCTGCTCCATGGTGCCCGGCACCCCCACGGACCAGACGCAGTACACCCGCGGCGGCCTCCTCTTCAAGCTCAGCGACAGCAACATGCAGTACGTCACCTCCAGCTCCTTCCTGCTGCTCACCTACGCCAAGTACCTCGCCTTCTCCAAGACCACCGTCTCCTGCGGCGGCGCCGCCGTCACGCCGGCCCGCCTCCGCGCCATCGCGCGCCAGCAGGTGGACTACCTGCTGGGGAGCAACCCGATGGGGATGTCGTACATGGTCGGGTACGGCGCCAAGTACCCGCGGAGGATCCACCACCGCGCGTCGTCGCTGCCGTCGGTGGCGGCGCACCCCGCCAGGATCGGCTGCTCGCAGGGGTTCACCGCGCTCTACTCCGGCGTCGCCAACCCCAACGTCCTCGTCGGCGCCGTCGTCGGAGGGCCCAACCTGCAGGACCAGTTCCCCGACCAGCGCAGCGACCACGAGCACTCCGAGCCGGCCACCTACATCAACGCGCCGCTCGTCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAACTGATTGCGAAATCAACAAGTGT] [-] EMBL CB964684 [ ACGCGCCGCTCGTCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA ] [-] EMBL BU673277 [ TCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA ] [-] EMBL CB965563 [ TCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA ] consensusID : consensus_8421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [TGGGGGCCCAGGGTTAAAATTTTTAAAGTTGGGTTAGTAAATTTGTGAATTTTGGGGGAACCCCCCAGTGCCAAAGCAAAACCAAGGAGCACTTAGTGGGGTTCTAAGGTATTCATTAGGGGTACGTAATTAACGTGCTCGCATGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA] [-] EMBL BU673564 [TGGGGGCCCAGGGTTAAAATTTTTAAAGTTGGGTTAGTAAATTTGTGAATTTTGGGGGAACCCCCCAGTGCCAAAGCAAAACCAAGGAGCACTTAGTGGGGTTCTAAGGTATTCATTAGGGGTACGTAATTAACGTGCTCGCATGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8421#0 GGCGGCAGCGAGCTAGCCAGCGGAGAGCTCCTCCAAGTGCAGAGTAGGGGTCCCTTCTCC 60 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GCCGCTCTGCTCACCATTTCCTCTCTCGTAGCCATGGCTCTCCTCCGCTGCCTCTTCCTC 120 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 CTCGCCGTCCTTCTTCCCCACCGCAATGCCGCCGTCGTCGCCGCCGCGTCGCCGCACCAC 180 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GGCCCCGCGCCGCACGACTACAGGGACGCGCTCACCAAGTCCATCCTCTTCTTCGAGGGC 240 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 CAGCGCTCCGGGAAGCTGCCGCCGTCGCAGCGCGTCTCCTGGCGGGGTGACTCCGGCCTC 300 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 TCCGACGGCTCCTCCATCAAGGTGGACTTGGTGGGAGGGTACTACGACGCCGGCGACAAC 360 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 ATGAAGTTCGGGTCCCCGCTGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAG 420 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 TTCGGTGGACTCATGAAGGGTGAGCTCCAGCACGCCAGGGACGCCGTCCGCTGGGGCTCC 480 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GACTACCTCCTCAAGGCCACCGCCCACCCGGACACCGTCTACGTCCAGGTCGGTGATGCC 540 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 AACAGGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACACCGAGGACCGTGTAC 600 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 AAGGTCGACCCGAGCACCCCGGGCACCGACGTCGCGGCCGAGACCGCCGCGGCGCTCGCC 660 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GCCGCCTCGCTCGTCTTCCGCAAGTCCGACCCGGCCTACGCCAGCCGCCTCGTCGCCAGG 720 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GCCAAGAGGGTGTTTGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCG 780 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 CCATACGTCTGCCCATACTACTGCTCCTACTCCGGGTACCAGGATGAGCTGCTGTGGGGG 840 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GCGGCATGGCTACACAGGGCGACCAAGAACCCGACGTACCTGAGCTACATCCAGATGAAC 900 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GGGCAGGTGCTGGGCGCGGACGAGCAGGACAACACGTTCGGGTGGGACAACAAGCACGCC 960 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GGGGCGAGGATCCTGATCGCCAAGGCGTTCCTGGTGCAGAAGGTGGCGGCGCTGCACGAG 1020 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 TACAAGGGCCACGCCGACAGCTTCATCTGCTCCATGGTGCCCGGCACCCCCACGGACCAG 1080 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 ACGCAGTACACCCGCGGCGGCCTCCTCTTCAAGCTCAGCGACAGCAACATGCAGTACGTC 1140 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 ACCTCCAGCTCCTTCCTGCTGCTCACCTACGCCAAGTACCTCGCCTTCTCCAAGACCACC 1200 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GTCTCCTGCGGCGGCGCCGCCGTCACGCCGGCCCGCCTCCGCGCCATCGCGCGCCAGCAG 1260 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GTGGACTACCTGCTGGGGAGCAACCCGATGGGGATGTCGTACATGGTCGGGTACGGCGCC 1320 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 AAGTACCCGCGGAGGATCCACCACCGCGCGTCGTCGCTGCCGTCGGTGGCGGCGCACCCC 1380 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GCCAGGATCGGCTGCTCGCAGGGGTTCACCGCGCTCTACTCCGGCGTCGCCAACCCCAAC 1440 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GTCCTCGTCGGCGCCGTCGTCGGAGGGCCCAACCTGCAGGACCAGTTCCCCGACCAGCGC 1500 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 AGCGACCACGAGCACTCCGAGCCGGCCACCTACATCAACGCGCCGCTCGTCGGAGCGCTC 1560 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 GCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTG 1620 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 ATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAG 1680 consensus_8421#1 ------------------------------------------------------------ consensus_8421#0 TCGGTGGATTTGGGGGCAGGTT----AAATTTAGTGGGTAGTAATTGTGA--TTTGGGGA 1734 consensus_8421#1 -TGGGGGCCCAGGGTTAAAATTTTTAAAGTTGGGTTAGTAA-ATTTGTGAATTTTGGGGG 58 ** ** *** * ** ** ** ** *** * ****** ******* consensus_8421#0 ----CCCCAGTGC--AAGCAAAAC--AAGAGCACT-AGTGGG--TCTAAG-TATTCATTA 1782 consensus_8421#1 AACCCCCCAGTGCCAAAGCAAAACCAAGGAGCACTTAGTGGGGTTCTAAGGTATTCATTA 118 ********* ********* * ******* ****** ****** ********* consensus_8421#0 GGG-TACGTAATTAACGTGCTCGC-TGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACG 1840 consensus_8421#1 GGGGTACGTAATTAACGTGCTCGCATGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACG 178 *** ******************** *********************************** consensus_8421#0 GATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAACTGATTGCGAAATCAACAAGT 1900 consensus_8421#1 GATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA--------------------- 217 *************************************** consensus_8421#0 GT 1902 consensus_8421#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||