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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1902 fasta sequence
[GGCGGCAGCGAGCTAGCCAGCGGAGAGCTCCTCCAAGTGCAGAGTAGGGGTCCCTTCTCCGCCGCTCTGCTCACCATTTCCTCTCTCGTAGCCATGGCTCTCCTCCGCTGCCTCTTCCTCCTCGCCGTCCTTCTTCCCCACCGCAATGCCGCCGTCGTCGCCGCCGCGTCGCCGCACCACGGCCCCGCGCCGCACGACTACAGGGACGCGCTCACCAAGTCCATCCTCTTCTTCGAGGGCCAGCGCTCCGGGAAGCTGCCGCCGTCGCAGCGCGTCTCCTGGCGGGGTGACTCCGGCCTCTCCGACGGCTCCTCCATCAAGGTGGACTTGGTGGGAGGGTACTACGACGCCGGCGACAACATGAAGTTCGGGTCCCCGCTGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAGTTCGGTGGACTCATGAAGGGTGAGCTCCAGCACGCCAGGGACGCCGTCCGCTGGGGCTCCGACTACCTCCTCAAGGCCACCGCCCACCCGGACACCGTCTACGTCCAGGTCGGTGATGCCAACAGGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACACCGAGGACCGTGTACAAGGTCGACCCGAGCACCCCGGGCACCGACGTCGCGGCCGAGACCGCCGCGGCGCTCGCCGCCGCCTCGCTCGTCTTCCGCAAGTCCGACCCGGCCTACGCCAGCCGCCTCGTCGCCAGGGCCAAGAGGGTGTTTGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCGCCATACGTCTGCCCATACTACTGCTCCTACTCCGGGTACCAGGATGAGCTGCTGTGGGGGGCGGCATGGCTACACAGGGCGACCAAGAACCCGACGTACCTGAGCTACATCCAGATGAACGGGCAGGTGCTGGGCGCGGACGAGCAGGACAACACGTTCGGGTGGGACAACAAGCACGCCGGGGCGAGGATCCTGATCGCCAAGGCGTTCCTGGTGCAGAAGGTGGCGGCGCTGCACGAGTACAAGGGCCACGCCGACAGCTTCATCTGCTCCATGGTGCCCGGCACCCCCACGGACCAGACGCAGTACACCCGCGGCGGCCTCCTCTTCAAGCTCAGCGACAGCAACATGCAGTACGTCACCTCCAGCTCCTTCCTGCTGCTCACCTACGCCAAGTACCTCGCCTTCTCCAAGACCACCGTCTCCTGCGGCGGCGCCGCCGTCACGCCGGCCCGCCTCCGCGCCATCGCGCGCCAGCAGGTGGACTACCTGCTGGGGAGCAACCCGATGGGGATGTCGTACATGGTCGGGTACGGCGCCAAGTACCCGCGGAGGATCCACCACCGCGCGTCGTCGCTGCCGTCGGTGGCGGCGCACCCCGCCAGGATCGGCTGCTCGCAGGGGTTCACCGCGCTCTACTCCGGCGTCGCCAACCCCAACGTCCTCGTCGGCGCCGTCGTCGGAGGGCCCAACCTGCAGGACCAGTTCCCCGACCAGCGCAGCGACCACGAGCACTCCGAGCCGGCCACCTACATCAACGCGCCGCTCGTCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAACTGATTGCGAAATCAACAAGTGT]
[+] EMBL AK106887 [GGCGGCAGCGAGCTAGCCAGCGGAGAGCTCCTCCAAGTGCAGAGTAGGGGTCCCTTCTCCGCCGCTCTGCTCACCATTTCCTCTCTCGTAGCCATGGCTCTCCTCCGCTGCCTCTTCCTCCTCGCCGTCCTTCTTCCCCACCGCAATGCCGCCGTCGTCGCCGCCGCGTCGCCGCACCACGGCCCCGCGCCGCACGACTACAGGGACGCGCTCACCAAGTCCATCCTCTTCTTCGAGGGCCAGCGCTCCGGGAAGCTGCCGCCGTCGCAGCGCGTCTCCTGGCGGGGTGACTCCGGCCTCTCCGACGGCTCCTCCATCAAGGTGGACTTGGTGGGAGGGTACTACGACGCCGGCGACAACATGAAGTTCGGGTCCCCGCTGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAGTTCGGTGGACTCATGAAGGGTGAGCTCCAGCACGCCAGGGACGCCGTCCGCTGGGGCTCCGACTACCTCCTCAAGGCCACCGCCCACCCGGACACCGTCTACGTCCAGGTCGGTGATGCCAACAGGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACACCGAGGACCGTGTACAAGGTCGACCCGAGCACCCCGGGCACCGACGTCGCGGCCGAGACCGCCGCGGCGCTCGCCGCCGCCTCGCTCGTCTTCCGCAAGTCCGACCCGGCCTACGCCAGCCGCCTCGTCGCCAGGGCCAAGAGGGTGTTTGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCGCCATACGTCTGCCCATACTACTGCTCCTACTCCGGGTACCAGGATGAGCTGCTGTGGGGGGCGGCATGGCTACACAGGGCGACCAAGAACCCGACGTACCTGAGCTACATCCAGATGAACGGGCAGGTGCTGGGCGCGGACGAGCAGGACAACACGTTCGGGTGGGACAACAAGCACGCCGGGGCGAGGATCCTGATCGCCAAGGCGTTCCTGGTGCAGAAGGTGGCGGCGCTGCACGAGTACAAGGGCCACGCCGACAGCTTCATCTGCTCCATGGTGCCCGGCACCCCCACGGACCAGACGCAGTACACCCGCGGCGGCCTCCTCTTCAAGCTCAGCGACAGCAACATGCAGTACGTCACCTCCAGCTCCTTCCTGCTGCTCACCTACGCCAAGTACCTCGCCTTCTCCAAGACCACCGTCTCCTGCGGCGGCGCCGCCGTCACGCCGGCCCGCCTCCGCGCCATCGCGCGCCAGCAGGTGGACTACCTGCTGGGGAGCAACCCGATGGGGATGTCGTACATGGTCGGGTACGGCGCCAAGTACCCGCGGAGGATCCACCACCGCGCGTCGTCGCTGCCGTCGGTGGCGGCGCACCCCGCCAGGATCGGCTGCTCGCAGGGGTTCACCGCGCTCTACTCCGGCGTCGCCAACCCCAACGTCCTCGTCGGCGCCGTCGTCGGAGGGCCCAACCTGCAGGACCAGTTCCCCGACCAGCGCAGCGACCACGAGCACTCCGAGCCGGCCACCTACATCAACGCGCCGCTCGTCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAACTGATTGCGAAATCAACAAGTGT]
[-] EMBL CB964684 [ ACGCGCCGCTCGTCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA ]
[-] EMBL BU673277 [ TCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA ]
[-] EMBL CB965563 [ TCGGAGCGCTCGCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAACAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA ]
consensusID : consensus_8421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence
[TGGGGGCCCAGGGTTAAAATTTTTAAAGTTGGGTTAGTAAATTTGTGAATTTTGGGGGAACCCCCCAGTGCCAAAGCAAAACCAAGGAGCACTTAGTGGGGTTCTAAGGTATTCATTAGGGGTACGTAATTAACGTGCTCGCATGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA]
[-] EMBL BU673564 [TGGGGGCCCAGGGTTAAAATTTTTAAAGTTGGGTTAGTAAATTTGTGAATTTTGGGGGAACCCCCCAGTGCCAAAGCAAAACCAAGGAGCACTTAGTGGGGTTCTAAGGTATTCATTAGGGGTACGTAATTAACGTGCTCGCATGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8421#0 GGCGGCAGCGAGCTAGCCAGCGGAGAGCTCCTCCAAGTGCAGAGTAGGGGTCCCTTCTCC 60
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GCCGCTCTGCTCACCATTTCCTCTCTCGTAGCCATGGCTCTCCTCCGCTGCCTCTTCCTC 120
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 CTCGCCGTCCTTCTTCCCCACCGCAATGCCGCCGTCGTCGCCGCCGCGTCGCCGCACCAC 180
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GGCCCCGCGCCGCACGACTACAGGGACGCGCTCACCAAGTCCATCCTCTTCTTCGAGGGC 240
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 CAGCGCTCCGGGAAGCTGCCGCCGTCGCAGCGCGTCTCCTGGCGGGGTGACTCCGGCCTC 300
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 TCCGACGGCTCCTCCATCAAGGTGGACTTGGTGGGAGGGTACTACGACGCCGGCGACAAC 360
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 ATGAAGTTCGGGTCCCCGCTGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAG 420
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 TTCGGTGGACTCATGAAGGGTGAGCTCCAGCACGCCAGGGACGCCGTCCGCTGGGGCTCC 480
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GACTACCTCCTCAAGGCCACCGCCCACCCGGACACCGTCTACGTCCAGGTCGGTGATGCC 540
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 AACAGGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACACCGAGGACCGTGTAC 600
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 AAGGTCGACCCGAGCACCCCGGGCACCGACGTCGCGGCCGAGACCGCCGCGGCGCTCGCC 660
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GCCGCCTCGCTCGTCTTCCGCAAGTCCGACCCGGCCTACGCCAGCCGCCTCGTCGCCAGG 720
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GCCAAGAGGGTGTTTGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCG 780
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 CCATACGTCTGCCCATACTACTGCTCCTACTCCGGGTACCAGGATGAGCTGCTGTGGGGG 840
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GCGGCATGGCTACACAGGGCGACCAAGAACCCGACGTACCTGAGCTACATCCAGATGAAC 900
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GGGCAGGTGCTGGGCGCGGACGAGCAGGACAACACGTTCGGGTGGGACAACAAGCACGCC 960
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GGGGCGAGGATCCTGATCGCCAAGGCGTTCCTGGTGCAGAAGGTGGCGGCGCTGCACGAG 1020
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 TACAAGGGCCACGCCGACAGCTTCATCTGCTCCATGGTGCCCGGCACCCCCACGGACCAG 1080
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 ACGCAGTACACCCGCGGCGGCCTCCTCTTCAAGCTCAGCGACAGCAACATGCAGTACGTC 1140
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 ACCTCCAGCTCCTTCCTGCTGCTCACCTACGCCAAGTACCTCGCCTTCTCCAAGACCACC 1200
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GTCTCCTGCGGCGGCGCCGCCGTCACGCCGGCCCGCCTCCGCGCCATCGCGCGCCAGCAG 1260
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GTGGACTACCTGCTGGGGAGCAACCCGATGGGGATGTCGTACATGGTCGGGTACGGCGCC 1320
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 AAGTACCCGCGGAGGATCCACCACCGCGCGTCGTCGCTGCCGTCGGTGGCGGCGCACCCC 1380
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GCCAGGATCGGCTGCTCGCAGGGGTTCACCGCGCTCTACTCCGGCGTCGCCAACCCCAAC 1440
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GTCCTCGTCGGCGCCGTCGTCGGAGGGCCCAACCTGCAGGACCAGTTCCCCGACCAGCGC 1500
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 AGCGACCACGAGCACTCCGAGCCGGCCACCTACATCAACGCGCCGCTCGTCGGAGCGCTC 1560
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 GCCTACCTCGCCCACTCCTACGGCCAGCTCTAGGCTCTACTACCTTCTTTGGGAGATTTG 1620
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 ATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAATCTAATTAG 1680
consensus_8421#1 ------------------------------------------------------------
consensus_8421#0 TCGGTGGATTTGGGGGCAGGTT----AAATTTAGTGGGTAGTAATTGTGA--TTTGGGGA 1734
consensus_8421#1 -TGGGGGCCCAGGGTTAAAATTTTTAAAGTTGGGTTAGTAA-ATTTGTGAATTTTGGGGG 58
** ** *** * ** ** ** ** *** * ****** *******
consensus_8421#0 ----CCCCAGTGC--AAGCAAAAC--AAGAGCACT-AGTGGG--TCTAAG-TATTCATTA 1782
consensus_8421#1 AACCCCCCAGTGCCAAAGCAAAACCAAGGAGCACTTAGTGGGGTTCTAAGGTATTCATTA 118
********* ********* * ******* ****** ****** *********
consensus_8421#0 GGG-TACGTAATTAACGTGCTCGC-TGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACG 1840
consensus_8421#1 GGGGTACGTAATTAACGTGCTCGCATGGTGTTAAACCCTGTGTTCGTAAAGCGGTCGACG 178
*** ******************** ***********************************
consensus_8421#0 GATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAACTGATTGCGAAATCAACAAGT 1900
consensus_8421#1 GATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA--------------------- 217
***************************************
consensus_8421#0 GT 1902
consensus_8421#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||