cluster # 8428

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Oryza sativa
cluster # 8428 cluster # 8428 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8428#0 length = 1039 sequences # 3

consensus_8428#1 length = 450 sequences # 1
consensus_8428#2 length = 423 sequences # 1

consensusID : consensus_8428#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1039
fasta sequence

                              [TGCGATTGATTTTGTAGTAAGCAACAGAGTAAATTAAGAAAGCTGTGACTGCAATAGTGGATGGCTCGACCGGCAGCTCGCCGCGGCGCAAGGCGCAGCCGC-GCCCGCGGCCT-CCTGCTCCTCGCCGCCGCCGCCGCCGTGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGGTGAGGAGGAGCGCCACCAGCAGCAGCAGCAGCAGCCGGGAGGGACGTTCGAGTTCAACCTGCCTGGCCATGGCAACGTCAAGGCCTCGTGGAGCGTGGCCGACGACGAGGAGAGCCGGTGGCTCGACCGCTTGGCCGCCGACGCCGAGTCGTCGTCGTCCTCAGCCTCGGCGGCGGGCGGCGGCGGCGGCCACCGTATCCCCTTCGGCGACGACAGCGTCAAGTTCGGCAGCGACGCGTACGAGTTCATCGCCGACCTGCTCAGGCAAGGCACCGACGACGGCGAGGGTGAGAAGCCGACGGGTTACTGGGAGAAGGTTGACGAGGAGGGGAGCCGGATGCTGGACCGCATCGCCGCGAACGCGAGACACCGGGCAGAGGCCAACGGCGACGACGA---CATTGGTGGCTTTGTTCACAACGTCTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTCTCATGTCGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTGCTACTAAA-TTGATGTGGGTTTTTATTCAGGCATGATTAGAAGACAGTACTAGCATTTCACAGGATTTTAACTACAATAAGTATCT]

[+] EMBL AK107765             [TGCGATTGATTTTGTAGTAAGCAACAGAGTAAATTAAGAAAGCTGTGACTGCAATAGTGGATGGCTCGACCGGCAGCTCGCCGCGGCGCAAGGCGCAGCCGC GCCCGCGGCCT CCTGCTCCTCGCCGCCGCCGCCGCCGTGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGGTGAGGAGGAGCGCCACCAGCAGCAGCAGCAGCAGCCGGGAGGGACGTTCGAGTTCAACCTGCCTGGCCATGGCAACGTCAAGGCCTCGTGGAGCGTGGCCGACGACGAGGAGAGCCGGTGGCTCGACCGCTTGGCCGCCGACGCCGAGTCGTCGTCGTCCTCAGCCTCGGCGGCGGGCGGCGGCGGCGGCCACCGTATCCCCTTCGGCGACGACAGCGTCAAGTTCGGCAGCGACGCGTACGAGTTCATCGCCGACCTGCTCAGGCAAGGCACCGACGACGGCGAGGGTGAGAAGCCGACGGGTTACTGGGAGAAGGTTGACGAGGAGGGGAGCCGGATGCTGGACCGCATCGCCGCGAACGCGAGACACCGGGCAGAGGCCAACGGCGACGACGA   CATTGGTGGCTTTGTTCACAACGTCTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTCTCATGTCGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTGCTACTAAA TTGATGTGGGTTTTTATTCAGGCATGATTAGAAGACAGTACTAGCATTTCACAGGATTTTAACTACAATAAGTATCT]
[+] EMBL AU077604             [               AGTAAGCAACAGAGTAAATTAAGAAAGCTGTGACTGCAATAGTGGATGGCTCGACCGGCAGCTCGCCGCGGCGCAAGGCGCAG CGCNGCCCGCGGCCTGCCTGCTCCTNGCCGCCGCCGCCGCCGTGGC GTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGGTGAGGAGGAGCGCCACCAGCAGCAGCAGCAGCAGCCGGGAGGGACGTTCGAGTTCAACCTGCCTGGCCATGGCAACGTCAAGGCCTCGTGGAGCGTGGCCGACGACGAGGAGAGCCGGTGGCTCGACCGCTTGGCCGCCGACGCCGAGTCGTCGTCGTCCTCAGCCTCGGCGGCGGGNGGCGGCGGCGGCCACCGTATCCCCTTCGGCGACGACAGCGTCAAGTTCGGCAGCGACGCGTACGAGTTCATCGCCGACCTGCTCAGGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BI795454             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCTGGACCGCATC CC CGAACGCGAGACACCGGGCAGAGGCCAACGGCGACGACGACAGCATTGGTGGCTTTGTGCACAACGTCTTCTCTGGCAAGTCCAAGCAGCATGGCGAGGAGCCGTCTCATGTTGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGC AGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCAC ATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTC ATTTGCTTGCTACTAAACTTGATGTGGGTTTTTATTCAaaaaa                                                    ]




>consensus_8428#0
TGCGATTGATTTTGTAGTAAGCAACAGAGTAAATTAAGAAAGCTGTGACTGCAATAGTGG
ATGGCTCGACCGGCAGCTCGCCGCGGCGCAAGGCGCAGCCGCGCCCGCGGCCTCCTGCTC
CTCGCCGCCGCCGCCGCCGTGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGGTGAG
GAGGAGCGCCACCAGCAGCAGCAGCAGCAGCCGGGAGGGACGTTCGAGTTCAACCTGCCT
GGCCATGGCAACGTCAAGGCCTCGTGGAGCGTGGCCGACGACGAGGAGAGCCGGTGGCTC
GACCGCTTGGCCGCCGACGCCGAGTCGTCGTCGTCCTCAGCCTCGGCGGCGGGCGGCGGC
GGCGGCCACCGTATCCCCTTCGGCGACGACAGCGTCAAGTTCGGCAGCGACGCGTACGAG
TTCATCGCCGACCTGCTCAGGCAAGGCACCGACGACGGCGAGGGTGAGAAGCCGACGGGT
TACTGGGAGAAGGTTGACGAGGAGGGGAGCCGGATGCTGGACCGCATCGCCGCGAACGCG
AGACACCGGGCAGAGGCCAACGGCGACGACGACATTGGTGGCTTTGTTCACAACGTCTTC
TCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTCTCATGTCGAGAGTGACAAGGAGTTC
AGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACT
TGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGC
CTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCT
GTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAAT
CTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTGCTACTA
AATTGATGTGGGTTTTTATTCAGGCATGATTAGAAGACAGTACTAGCATTTCACAGGATT
TTAACTACAATAAGTATCT

consensusID : consensus_8428#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [GACGACGACAGCATTGGTGGCTTTGTTCACAACGTCTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCNTCTCATGTCGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTNNTACTAAATTGATGTGGGTTTTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU077605             [GACGACGACAGCATTGGTGGCTTTGTTCACAACGTCTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCNTCTCATGTCGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTNNTACTAAATTGATGTGGGTTTTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8428#1
GACGACGACAGCATTGGTGGCTTTGTTCACAACGTCTTCTCTGGCAAGTCCAAGCAGCAC
GGCGAGGAGCCNTCTCATGTCGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCT
CATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGT
GTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAAGAAGG
TTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGC
AGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAATCTGGAACGAGTGAAACTTGCA
CAATCATATCACTGTGATATTTCAATTTGCTTNNTACTAAATTGATGTGGGTTTTTATTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8428#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [ACGACAGCATTGGTGGCTTTGTTCACAACGTNTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTNTCATGTCGAGAGTGACAAGGAGTTCAGTANCAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAANAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAANAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCNCAATCTGGAACGAGTGAAACTTGCNCAATCATATCNCTGTGATATTTCAATTTGCTTGCTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU172708             [ACGACAGCATTGGTGGCTTTGTTCACAACGTNTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTNTCATGTCGAGAGTGACAAGGAGTTCAGTANCAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAANAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAANAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCNCAATCTGGAACGAGTGAAACTTGCNCAATCATATCNCTGTGATATTTCAATTTGCTTGCTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8428#2
ACGACAGCATTGGTGGCTTTGTTCACAACGTNTTCTCTGGCAAGTCCAAGCAGCACGGCG
AGGAGCCGTNTCATGTCGAGAGTGACAAGGAGTTCAGTANCAGTAAGCTCCCTCCTCATG
ACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCA
ACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAANAAGGTTAA
CTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAANAATTGTAGCAGTC
TAGTTCATGTCTTAGCTTCCTCTAATTATCNCAATCTGGAACGAGTGAAACTTGCNCAAT
CATATCNCTGTGATATTTCAATTTGCTTGCTNCTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8428#1      ------------------------------------------------------------
consensus_8428#2      ------------------------------------------------------------
consensus_8428#0      TGCGATTGATTTTGTAGTAAGCAACAGAGTAAATTAAGAAAGCTGTGACTGCAATAGTGG 60
                                                                                  

consensus_8428#1      ------------------------------------------------------------
consensus_8428#2      ------------------------------------------------------------
consensus_8428#0      ATGGCTCGACCGGCAGCTCGCCGCGGCGCAAGGCGCAGCCGCGCCCGCGGCCTCCTGCTC 120
                                                                                  

consensus_8428#1      ------------------------------------------------------------
consensus_8428#2      ------------------------------------------------------------
consensus_8428#0      CTCGCCGCCGCCGCCGCCGTGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGGTGAG 180
                                                                                  

consensus_8428#1      ------------------------------------------------------------
consensus_8428#2      ------------------------------------------------------------
consensus_8428#0      GAGGAGCGCCACCAGCAGCAGCAGCAGCAGCCGGGAGGGACGTTCGAGTTCAACCTGCCT 240
                                                                                  

consensus_8428#1      ------------------------------------------------------------
consensus_8428#2      ------------------------------------------------------------
consensus_8428#0      GGCCATGGCAACGTCAAGGCCTCGTGGAGCGTGGCCGACGACGAGGAGAGCCGGTGGCTC 300
                                                                                  

consensus_8428#1      ------------------------------------------------------------
consensus_8428#2      ------------------------------------------------------------
consensus_8428#0      GACCGCTTGGCCGCCGACGCCGAGTCGTCGTCGTCCTCAGCCTCGGCGGCGGGCGGCGGC 360
                                                                                  

consensus_8428#1      ------------------------------------------------------------
consensus_8428#2      ------------------------------------------------------------
consensus_8428#0      GGCGGCCACCGTATCCCCTTCGGCGACGACAGCGTCAAGTTCGGCAGCGACGCGTACGAG 420
                                                                                  

consensus_8428#1      ------------------------------------------------------------
consensus_8428#2      ------------------------------------------------------------
consensus_8428#0      TTCATCGCCGACCTGCTCAGGCAAGGCACCGACGACGGCGAGGGTGAGAAGCCGACGGGT 480
                                                                                  

consensus_8428#1      ------------------------------------------------------------
consensus_8428#2      ------------------------------------------------------------
consensus_8428#0      TACTGGGAGAAGGTTGACGAGGAGGGGAGCCGGATGCTGGACCGCATCGCCGCGAACGCG 540
                                                                                  

consensus_8428#1      ---------------------GACGACGACAGCATTGGTGGCTTTGTTCACAACGTCTTC 39
consensus_8428#2      -------------------------ACGACAGCATTGGTGGCTTTGTTCACAACGTNTTC 35
consensus_8428#0      AGACACCGGGCAGAGGCCAACGGCGACGACGACATTGGTGGCTTTGTTCACAACGTCTTC 600
                                               *****  ************************ ***

consensus_8428#1      TCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCNTCTCATGTCGAGAGTGACAAGGAGTTC 99
consensus_8428#2      TCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTNTCATGTCGAGAGTGACAAGGAGTTC 95
consensus_8428#0      TCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTCTCATGTCGAGAGTGACAAGGAGTTC 660
                      ******************************** * *************************

consensus_8428#1      AGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACT 159
consensus_8428#2      AGTANCAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACT 155
consensus_8428#0      AGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACT 720
                      **** *******************************************************

consensus_8428#1      TGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGC 219
consensus_8428#2      TGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGC 215
consensus_8428#0      TGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGC 780
                      ************************************************************

consensus_8428#1      CTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCT 279
consensus_8428#2      CTATCTACTAAAGCAANAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCT 275
consensus_8428#0      CTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCT 840
                      **************** *******************************************

consensus_8428#1      GTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAAT 339
consensus_8428#2      GTCAAGCTGAANAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCNCAAT 335
consensus_8428#0      GTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAAT 900
                      *********** ******************************************* ****

consensus_8428#1      CTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTNNTACTA 399
consensus_8428#2      CTGGAACGAGTGAAACTTGCNCAATCATATCNCTGTGATATTTCAATTTGCTTGCTNCTA 395
consensus_8428#0      CTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTGCTACTA 960
                      ******************** ********** *********************  * ***

consensus_8428#1      AATTGATGTGGGTTTTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- 450
consensus_8428#2      AA-------------------AAAAAAAAAAAAAAAAAAAAAAAAAA------------- 423
consensus_8428#0      AATTGATGTGGGTTTTTATTCAGGCATGATTAGAAGACAGTACTAGCATTTCACAGGATT 1020
                      **                   *   *  *  * ** * *  *  *               

consensus_8428#1      -------------------
consensus_8428#2      -------------------
consensus_8428#0      TTAACTACAATAAGTATCT 1039