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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1659 fasta sequence
[TGCGCCGCGCTGCGCTGCGTACGTGACAGCAGAAGCGACGCGCGCGCGCGCGAGCGACACCAGATGTTGCCGTCCAGGCCGAGATCCGGGTCCTGGGGAGGCGGGACGCGGAGTTCTTCGGTGTCCACGCCGAGGTCTCGCCACGAGCGCAGCAAATCCGTCGCCACCATCTTCTCGCCGTCGTCTCCCGAGAGTTACGGCGGCGTCGTGATGGAGATGGAGGAGAAGAAGACGTCGTGCACGCTGCAAGAAGTCGATGGGTTGCGGCAGAGCGACGGTGGCGTGGACAAGGAAGTGGTGGGCGGCGGCGCGGCGTGCTCCGACGACCGGGTGCGGCTGCTGGAGCGGGAGGTGGCGACGGCGAAGGCGACGGAGATGAATATGCTGGAGTCGCTGATACAGCAGACGAAGGAGATGGAGCAGGCGAAGATCGCTCTCGAGGAGGCTAAGCTCGAGGTCGCCACGCTGCGGCAGCAGCAGGGACGCGCCCCTGCCGCCGAGCCAGCCGCCGCCGCCCAGTGGAGCGTCATGGACCTCATGTTC-GGCGGCGTCGACGA-GGAGATCAACGGGCTGAGGGCCAAGCT-CCGGGCGGCCGTGCAGGCGGAGGGAAGAGCAGGAAGGCGGCCGACGACCTCACCGCCGCGCTCTCCGCCGTCACCATGGAGGCCAAGCAGGTGAAGGCGTGGCTGTCCGACGCGCAGGCCGAGCTGGAGGACGCCAACGCCGAGGTCGACCGGCTCAGGGAGTCGCTGCACGCCGCCGAGGCGGAGCTGTGGTCGACGACCGAGCAGCTCGACGGCCTCACGTCGGACTGGAAGGAGGCCGCCGTTTCGTGGCGCGCCAGGGAGAAGGTGCTTCTCGCGCGCGTCCGGGCGGCCGAGGACGAGGCCCACGCGGCCGGGCAAGAGAACGTCGAGCTCGCCGAGCTGCACCGGGTGGTCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGGAGGTCAACGCGGCGAACGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGA-GGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCAC-AAGTGGAGGGGCGACATGCAT-GGCAAGC-TCAGCGCCACA-TTCCT-GGACTCCAACAGGGTGAT-GGCGGGCAGGAA-GGA-CCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGCGGCGGCCGCGGCGGCCATGGACGACTTCGACTACGAGTTCGACCACTTCGACGGCGGGCAGTACGGCGACCTGGACCACGCCATGAAGCAGAAGAAGAGGAGGTCGATCCTAAGGAAGTTCGGGGATTTCTTCCGGAGGAGAAGCTTGTACAAGCGCAACCTAGCGCCGGTGATTCACTACTAGTAGATTTTTACTACTTAGGTTGATCTAGATTAGATGCTTTAATGTTTTCGCGTGATGCTTTGTATGGTACGTGTTTGATTGAAATGATTAGCAAAAAAAAAAACGCCCA]
[+] EMBL AK102182 [TGCGCCGCGCTGCGCTGCGTACGTGACAGCAGAAGCGACGCGCGCGCGCGCGAGCGACACCAGATGTTGCCGTCCAGGCCGAGATCCGGGTCCTGGGGAGGCGGGACGCGGAGTTCTTCGGTGTCCACGCCGAGGTCTCGCCACGAGCGCAGCAAATCCGTCGCCACCATCTTCTCGCCGTCGTCTCCCGAGAGTTACGGCGGCGTCGTGATGGAGATGGAGGAGAAGAAGACGTCGTGCACGCTGCAAGAAGTCGATGGGTTGCGGCAGAGCGACGGTGGCGTGGACAAGGAAGTGGTGGGCGGCGGCGCGGCGTGCTCCGACGACCGGGTGCGGCTGCTGGAGCGGGAGGTGGCGACGGCGAAGGCGACGGAGATGAATATGCTGGAGTCGCTGATACAGCAGACGAAGGAGATGGAGCAGGCGAAGATCGCTCTCGAGGAGGCTAAGCTCGAGGTCGCCACGCTGCGGCAGCAGCAGGGACGCGCCCCTGCCGCCGAGCCAGCCGCCGCCGCCCAGTGGAGCGTCATGGACCTCATGTTC GGCGGCGTCGACGA GGAGATCAACGGGCTGAGGGCCAAGCT CCGGGCGGCCGTGCAGGCGGAGGGAAGAGCAGGAAGGCGGCCGACGACCTCACCGCCGCGCTCTCCGCCGTCACCATGGAGGCCAAGCAGGTGAAGGCGTGGCTGTCCGACGCGCAGGCCGAGCTGGAGGACGCCAACGCCGAGGTCGACCGGCTCAGGGAGTCGCTGCACGCCGCCGAGGCGGAGCTGTGGTCGACGACCGAGCAGCTCGACGGCCTCACGTCGGACTGGAAGGAGGCCGCCGTTTCGTGGCGCGCCAGGGAGAAGGTGCTTCTCGCGCGCGTCCGGGCGGCCGAGGACGAGGCCCACGCGGCCGGGCAAGAGAACGTCGAGCTCGCCGAGCTGCACCGGGTGGTCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGGAGGTCAACGCGGCGAACGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGA GGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCAC AAGTGGAGGGGCGACATGCAT GGCAAGC TCAGCGCCACA TTCCT GGACTCCAACAGGGTGAT GGCGGGCAGGAA GGA CCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGCGGCGGCCGCGGCGGCCATGGACGACTTCGACTACGAGTTCGACCACTTCGACGGCGGGCAGTACGGCGACCTGGACCACGCCATGAAGCAGAAGAAGAGGAGGTCGATCCTAAGGAAGTTCGGGGATTTCTTCCGGAGGAGAAGCTTGTACAAGCGCAACCTAGCGCCGGTGATTCACTACTAGTAGATTTTTACTACTTAGGTTGATCTAGATTAGATGCTTTAATGTTTTCGCGTGATGCTTTGTATGGTACGTGTTTGATTGAAATGATTAGCAAAAAAAAAAACGCCCA]
[+] EMBL CA756122 [ GCGCTGCGTACGTGACAGCAGAAGCGACGCGCGCGCGCGCGAGCGACACCAGATGTTGCCGTCCAGGCCGAGATCCGGGTCCTGGGGAGGCGGGACGCGGAGTTCTCCGGTGTCCACGCCGAGGTCTCGCCACGAGCGCAGCAAATCCGTCGCCACCATCTTCTCGCCGTCGTCTCCCGAGAGTTACGGCGGCGTCGTGATGGAGATGGAGGAGAAGAAGACGTCGTGCACGCTGCAAGAAGTCGATGGGTTGCGGCAGAGCGACGGTGGCGTGGACAAGGAAGTGGTGGGCGGCGGCGCGGCGTGCTCCGACGACCGGGTGCGGCTGCTGGAGCGGGAGGTGGCGACGACCAAGGCGACGGAGATGAATATGCTGGAGTCGCTGATACAGCAGACGAAGGAGATGGAGCAGGCGAAGATCGCTCTCGAGGAGGCTAAGCTCGAGGTCGCCACGCTGCGGCAGCAGCAGGGACGCGCCCCTGCCGTCGAGCCAGCCGCCGCCGCCCAGTGGAGCGTCATGGACCTCATGTTCTGGCGGCGTCGACGAGGGAGATCAACGGGCTGAGGGCCAAGCTCCCGGGCGGCCGGGCtagc ]
[+] EMBL AU070717 [ CGAGCTCGCCGAGCTGCACCGGGTGGTCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGGAGGTCAACGCGGCGAACGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGA GGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAACACGGAAGGCCGCCGATCACGGTCATNGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAAGTGGAGGGGCGANATGCATGGGCAAGCTTCAGCGCCANATTTCCTGGGACTCCAACAGGGTGATGGGCGGGCAAGAANGGANCGGGATGTTCGCGTCGC ]
[+] EMBL AU163459 [ CCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGATGGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCAC AAGTGGAGGGGCGACATGCAT GGCAAGC TCAGCGCCACA TTCCT GGACTCCAACAGGGTGAT GGCGGGCAGGAA GGA CCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTC ]
consensusID : consensus_8435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[TCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGAGGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAGTGGAGGGGCGACATGCATGGCAAGCTCAGCGCCACATTCCTGGACTCCAACAGGGTGATGGCGGGCAGGAAGGACCCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGC]
[+] EMBL AU184820 [TCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGAGGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAGTGGAGGGGCGACATGCATGGCAAGCTCAGCGCCACATTCCTGGACTCCAACAGGGTGATGGCGGGCAGGAAGGACCCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8435#0 TGCGCCGCGCTGCGCTGCGTACGTGACAGCAGAAGCGACGCGCGCGCGCGCGAGCGACAC 60
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 CAGATGTTGCCGTCCAGGCCGAGATCCGGGTCCTGGGGAGGCGGGACGCGGAGTTCTTCG 120
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 GTGTCCACGCCGAGGTCTCGCCACGAGCGCAGCAAATCCGTCGCCACCATCTTCTCGCCG 180
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 TCGTCTCCCGAGAGTTACGGCGGCGTCGTGATGGAGATGGAGGAGAAGAAGACGTCGTGC 240
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 ACGCTGCAAGAAGTCGATGGGTTGCGGCAGAGCGACGGTGGCGTGGACAAGGAAGTGGTG 300
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 GGCGGCGGCGCGGCGTGCTCCGACGACCGGGTGCGGCTGCTGGAGCGGGAGGTGGCGACG 360
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 GCGAAGGCGACGGAGATGAATATGCTGGAGTCGCTGATACAGCAGACGAAGGAGATGGAG 420
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 CAGGCGAAGATCGCTCTCGAGGAGGCTAAGCTCGAGGTCGCCACGCTGCGGCAGCAGCAG 480
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 GGACGCGCCCCTGCCGCCGAGCCAGCCGCCGCCGCCCAGTGGAGCGTCATGGACCTCATG 540
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 TTCGGCGGCGTCGACGAGGAGATCAACGGGCTGAGGGCCAAGCTCCGGGCGGCCGTGCAG 600
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 GCGGAGGGAAGAGCAGGAAGGCGGCCGACGACCTCACCGCCGCGCTCTCCGCCGTCACCA 660
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 TGGAGGCCAAGCAGGTGAAGGCGTGGCTGTCCGACGCGCAGGCCGAGCTGGAGGACGCCA 720
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 ACGCCGAGGTCGACCGGCTCAGGGAGTCGCTGCACGCCGCCGAGGCGGAGCTGTGGTCGA 780
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 CGACCGAGCAGCTCGACGGCCTCACGTCGGACTGGAAGGAGGCCGCCGTTTCGTGGCGCG 840
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 CCAGGGAGAAGGTGCTTCTCGCGCGCGTCCGGGCGGCCGAGGACGAGGCCCACGCGGCCG 900
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 GGCAAGAGAACGTCGAGCTCGCCGAGCTGCACCGGGTGGTCGACGACGAGAACGGCAGCC 960
consensus_8435#1 ---------------------------------------TCGACGACGAGAACGGCAGCC 21
*********************
consensus_8435#0 TGCGTCGCGCTCTGGAGCGCGCCGTCGAGGAGGTCAACGCGGCGAACGAGTCGCTCGAGC 1020
consensus_8435#1 TGCGTCGCGCTCTGGAGCGCGCCGTCGAG---------------------TCGCTCGAGC 60
***************************** **********
consensus_8435#0 TCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGG 1080
consensus_8435#1 TCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGG 120
************************************************************
consensus_8435#0 AGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGAGGCGCGCGGGCGCG 1140
consensus_8435#1 AGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGAGGCGCGCGGGCGCG 180
************************************************************
consensus_8435#0 CCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCG 1200
consensus_8435#1 CCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCG 240
************************************************************
consensus_8435#0 CCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAGTGGAGGGGCGACA 1260
consensus_8435#1 CCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAGTGGAGGGGCGACA 300
************************************************************
consensus_8435#0 TGCATGGCAAGCTCAGCGCCACATTCCTGGACTCCAACAGGGTGATGGCGGGCAGGAAGG 1320
consensus_8435#1 TGCATGGCAAGCTCAGCGCCACATTCCTGGACTCCAACAGGGTGATGGCGGGCAGGAAGG 360
************************************************************
consensus_8435#0 ACC-GGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGCGGCGGCCGCGGCG 1379
consensus_8435#1 ACCCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGC------------- 407
*** *******************************************
consensus_8435#0 GCCATGGACGACTTCGACTACGAGTTCGACCACTTCGACGGCGGGCAGTACGGCGACCTG 1439
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 GACCACGCCATGAAGCAGAAGAAGAGGAGGTCGATCCTAAGGAAGTTCGGGGATTTCTTC 1499
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 CGGAGGAGAAGCTTGTACAAGCGCAACCTAGCGCCGGTGATTCACTACTAGTAGATTTTT 1559
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 ACTACTTAGGTTGATCTAGATTAGATGCTTTAATGTTTTCGCGTGATGCTTTGTATGGTA 1619
consensus_8435#1 ------------------------------------------------------------
consensus_8435#0 CGTGTTTGATTGAAATGATTAGCAAAAAAAAAAACGCCCA 1659
consensus_8435#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||