These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1659 fasta sequence [TGCGCCGCGCTGCGCTGCGTACGTGACAGCAGAAGCGACGCGCGCGCGCGCGAGCGACACCAGATGTTGCCGTCCAGGCCGAGATCCGGGTCCTGGGGAGGCGGGACGCGGAGTTCTTCGGTGTCCACGCCGAGGTCTCGCCACGAGCGCAGCAAATCCGTCGCCACCATCTTCTCGCCGTCGTCTCCCGAGAGTTACGGCGGCGTCGTGATGGAGATGGAGGAGAAGAAGACGTCGTGCACGCTGCAAGAAGTCGATGGGTTGCGGCAGAGCGACGGTGGCGTGGACAAGGAAGTGGTGGGCGGCGGCGCGGCGTGCTCCGACGACCGGGTGCGGCTGCTGGAGCGGGAGGTGGCGACGGCGAAGGCGACGGAGATGAATATGCTGGAGTCGCTGATACAGCAGACGAAGGAGATGGAGCAGGCGAAGATCGCTCTCGAGGAGGCTAAGCTCGAGGTCGCCACGCTGCGGCAGCAGCAGGGACGCGCCCCTGCCGCCGAGCCAGCCGCCGCCGCCCAGTGGAGCGTCATGGACCTCATGTTC-GGCGGCGTCGACGA-GGAGATCAACGGGCTGAGGGCCAAGCT-CCGGGCGGCCGTGCAGGCGGAGGGAAGAGCAGGAAGGCGGCCGACGACCTCACCGCCGCGCTCTCCGCCGTCACCATGGAGGCCAAGCAGGTGAAGGCGTGGCTGTCCGACGCGCAGGCCGAGCTGGAGGACGCCAACGCCGAGGTCGACCGGCTCAGGGAGTCGCTGCACGCCGCCGAGGCGGAGCTGTGGTCGACGACCGAGCAGCTCGACGGCCTCACGTCGGACTGGAAGGAGGCCGCCGTTTCGTGGCGCGCCAGGGAGAAGGTGCTTCTCGCGCGCGTCCGGGCGGCCGAGGACGAGGCCCACGCGGCCGGGCAAGAGAACGTCGAGCTCGCCGAGCTGCACCGGGTGGTCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGGAGGTCAACGCGGCGAACGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGA-GGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCAC-AAGTGGAGGGGCGACATGCAT-GGCAAGC-TCAGCGCCACA-TTCCT-GGACTCCAACAGGGTGAT-GGCGGGCAGGAA-GGA-CCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGCGGCGGCCGCGGCGGCCATGGACGACTTCGACTACGAGTTCGACCACTTCGACGGCGGGCAGTACGGCGACCTGGACCACGCCATGAAGCAGAAGAAGAGGAGGTCGATCCTAAGGAAGTTCGGGGATTTCTTCCGGAGGAGAAGCTTGTACAAGCGCAACCTAGCGCCGGTGATTCACTACTAGTAGATTTTTACTACTTAGGTTGATCTAGATTAGATGCTTTAATGTTTTCGCGTGATGCTTTGTATGGTACGTGTTTGATTGAAATGATTAGCAAAAAAAAAAACGCCCA] [+] EMBL AK102182 [TGCGCCGCGCTGCGCTGCGTACGTGACAGCAGAAGCGACGCGCGCGCGCGCGAGCGACACCAGATGTTGCCGTCCAGGCCGAGATCCGGGTCCTGGGGAGGCGGGACGCGGAGTTCTTCGGTGTCCACGCCGAGGTCTCGCCACGAGCGCAGCAAATCCGTCGCCACCATCTTCTCGCCGTCGTCTCCCGAGAGTTACGGCGGCGTCGTGATGGAGATGGAGGAGAAGAAGACGTCGTGCACGCTGCAAGAAGTCGATGGGTTGCGGCAGAGCGACGGTGGCGTGGACAAGGAAGTGGTGGGCGGCGGCGCGGCGTGCTCCGACGACCGGGTGCGGCTGCTGGAGCGGGAGGTGGCGACGGCGAAGGCGACGGAGATGAATATGCTGGAGTCGCTGATACAGCAGACGAAGGAGATGGAGCAGGCGAAGATCGCTCTCGAGGAGGCTAAGCTCGAGGTCGCCACGCTGCGGCAGCAGCAGGGACGCGCCCCTGCCGCCGAGCCAGCCGCCGCCGCCCAGTGGAGCGTCATGGACCTCATGTTC GGCGGCGTCGACGA GGAGATCAACGGGCTGAGGGCCAAGCT CCGGGCGGCCGTGCAGGCGGAGGGAAGAGCAGGAAGGCGGCCGACGACCTCACCGCCGCGCTCTCCGCCGTCACCATGGAGGCCAAGCAGGTGAAGGCGTGGCTGTCCGACGCGCAGGCCGAGCTGGAGGACGCCAACGCCGAGGTCGACCGGCTCAGGGAGTCGCTGCACGCCGCCGAGGCGGAGCTGTGGTCGACGACCGAGCAGCTCGACGGCCTCACGTCGGACTGGAAGGAGGCCGCCGTTTCGTGGCGCGCCAGGGAGAAGGTGCTTCTCGCGCGCGTCCGGGCGGCCGAGGACGAGGCCCACGCGGCCGGGCAAGAGAACGTCGAGCTCGCCGAGCTGCACCGGGTGGTCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGGAGGTCAACGCGGCGAACGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGA GGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCAC AAGTGGAGGGGCGACATGCAT GGCAAGC TCAGCGCCACA TTCCT GGACTCCAACAGGGTGAT GGCGGGCAGGAA GGA CCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGCGGCGGCCGCGGCGGCCATGGACGACTTCGACTACGAGTTCGACCACTTCGACGGCGGGCAGTACGGCGACCTGGACCACGCCATGAAGCAGAAGAAGAGGAGGTCGATCCTAAGGAAGTTCGGGGATTTCTTCCGGAGGAGAAGCTTGTACAAGCGCAACCTAGCGCCGGTGATTCACTACTAGTAGATTTTTACTACTTAGGTTGATCTAGATTAGATGCTTTAATGTTTTCGCGTGATGCTTTGTATGGTACGTGTTTGATTGAAATGATTAGCAAAAAAAAAAACGCCCA] [+] EMBL CA756122 [ GCGCTGCGTACGTGACAGCAGAAGCGACGCGCGCGCGCGCGAGCGACACCAGATGTTGCCGTCCAGGCCGAGATCCGGGTCCTGGGGAGGCGGGACGCGGAGTTCTCCGGTGTCCACGCCGAGGTCTCGCCACGAGCGCAGCAAATCCGTCGCCACCATCTTCTCGCCGTCGTCTCCCGAGAGTTACGGCGGCGTCGTGATGGAGATGGAGGAGAAGAAGACGTCGTGCACGCTGCAAGAAGTCGATGGGTTGCGGCAGAGCGACGGTGGCGTGGACAAGGAAGTGGTGGGCGGCGGCGCGGCGTGCTCCGACGACCGGGTGCGGCTGCTGGAGCGGGAGGTGGCGACGACCAAGGCGACGGAGATGAATATGCTGGAGTCGCTGATACAGCAGACGAAGGAGATGGAGCAGGCGAAGATCGCTCTCGAGGAGGCTAAGCTCGAGGTCGCCACGCTGCGGCAGCAGCAGGGACGCGCCCCTGCCGTCGAGCCAGCCGCCGCCGCCCAGTGGAGCGTCATGGACCTCATGTTCTGGCGGCGTCGACGAGGGAGATCAACGGGCTGAGGGCCAAGCTCCCGGGCGGCCGGGCtagc ] [+] EMBL AU070717 [ CGAGCTCGCCGAGCTGCACCGGGTGGTCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGGAGGTCAACGCGGCGAACGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGA GGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAACACGGAAGGCCGCCGATCACGGTCATNGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAAGTGGAGGGGCGANATGCATGGGCAAGCTTCAGCGCCANATTTCCTGGGACTCCAACAGGGTGATGGGCGGGCAAGAANGGANCGGGATGTTCGCGTCGC ] [+] EMBL AU163459 [ CCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGATGGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCAC AAGTGGAGGGGCGACATGCAT GGCAAGC TCAGCGCCACA TTCCT GGACTCCAACAGGGTGAT GGCGGGCAGGAA GGA CCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTC ] consensusID : consensus_8435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [TCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGAGGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAGTGGAGGGGCGACATGCATGGCAAGCTCAGCGCCACATTCCTGGACTCCAACAGGGTGATGGCGGGCAGGAAGGACCCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGC] [+] EMBL AU184820 [TCGACGACGAGAACGGCAGCCTGCGTCGCGCTCTGGAGCGCGCCGTCGAGTCGCTCGAGCTCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGAGGCGCGCGGGCGCGCCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAGTGGAGGGGCGACATGCATGGCAAGCTCAGCGCCACATTCCTGGACTCCAACAGGGTGATGGCGGGCAGGAAGGACCCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8435#0 TGCGCCGCGCTGCGCTGCGTACGTGACAGCAGAAGCGACGCGCGCGCGCGCGAGCGACAC 60 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 CAGATGTTGCCGTCCAGGCCGAGATCCGGGTCCTGGGGAGGCGGGACGCGGAGTTCTTCG 120 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 GTGTCCACGCCGAGGTCTCGCCACGAGCGCAGCAAATCCGTCGCCACCATCTTCTCGCCG 180 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 TCGTCTCCCGAGAGTTACGGCGGCGTCGTGATGGAGATGGAGGAGAAGAAGACGTCGTGC 240 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 ACGCTGCAAGAAGTCGATGGGTTGCGGCAGAGCGACGGTGGCGTGGACAAGGAAGTGGTG 300 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 GGCGGCGGCGCGGCGTGCTCCGACGACCGGGTGCGGCTGCTGGAGCGGGAGGTGGCGACG 360 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 GCGAAGGCGACGGAGATGAATATGCTGGAGTCGCTGATACAGCAGACGAAGGAGATGGAG 420 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 CAGGCGAAGATCGCTCTCGAGGAGGCTAAGCTCGAGGTCGCCACGCTGCGGCAGCAGCAG 480 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 GGACGCGCCCCTGCCGCCGAGCCAGCCGCCGCCGCCCAGTGGAGCGTCATGGACCTCATG 540 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 TTCGGCGGCGTCGACGAGGAGATCAACGGGCTGAGGGCCAAGCTCCGGGCGGCCGTGCAG 600 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 GCGGAGGGAAGAGCAGGAAGGCGGCCGACGACCTCACCGCCGCGCTCTCCGCCGTCACCA 660 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 TGGAGGCCAAGCAGGTGAAGGCGTGGCTGTCCGACGCGCAGGCCGAGCTGGAGGACGCCA 720 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 ACGCCGAGGTCGACCGGCTCAGGGAGTCGCTGCACGCCGCCGAGGCGGAGCTGTGGTCGA 780 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 CGACCGAGCAGCTCGACGGCCTCACGTCGGACTGGAAGGAGGCCGCCGTTTCGTGGCGCG 840 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 CCAGGGAGAAGGTGCTTCTCGCGCGCGTCCGGGCGGCCGAGGACGAGGCCCACGCGGCCG 900 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 GGCAAGAGAACGTCGAGCTCGCCGAGCTGCACCGGGTGGTCGACGACGAGAACGGCAGCC 960 consensus_8435#1 ---------------------------------------TCGACGACGAGAACGGCAGCC 21 ********************* consensus_8435#0 TGCGTCGCGCTCTGGAGCGCGCCGTCGAGGAGGTCAACGCGGCGAACGAGTCGCTCGAGC 1020 consensus_8435#1 TGCGTCGCGCTCTGGAGCGCGCCGTCGAG---------------------TCGCTCGAGC 60 ***************************** ********** consensus_8435#0 TCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGG 1080 consensus_8435#1 TCGCCACCGGCGAGAACTCCAAGCTGCAGGACGCCGTCGCGGAGAAGGAGAGCGCCATGG 120 ************************************************************ consensus_8435#0 AGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGAGGCGCGCGGGCGCG 1140 consensus_8435#1 AGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGAGGCGCGCGGGCGCG 180 ************************************************************ consensus_8435#0 CCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCG 1200 consensus_8435#1 CCAAGGAGCTCGACGGCCAGCTCGCGGCAGCACGGAAGGCCGCCGATCACGGTCATGGCG 240 ************************************************************ consensus_8435#0 CCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAGTGGAGGGGCGACA 1260 consensus_8435#1 CCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGTCGCTGCACAAGTGGAGGGGCGACA 300 ************************************************************ consensus_8435#0 TGCATGGCAAGCTCAGCGCCACATTCCTGGACTCCAACAGGGTGATGGCGGGCAGGAAGG 1320 consensus_8435#1 TGCATGGCAAGCTCAGCGCCACATTCCTGGACTCCAACAGGGTGATGGCGGGCAGGAAGG 360 ************************************************************ consensus_8435#0 ACC-GGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGCGGCGGCCGCGGCG 1379 consensus_8435#1 ACCCGGATGTTCGCGTCGCTCAGCAACATCGCCGAGCTCAAGTCGGC------------- 407 *** ******************************************* consensus_8435#0 GCCATGGACGACTTCGACTACGAGTTCGACCACTTCGACGGCGGGCAGTACGGCGACCTG 1439 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 GACCACGCCATGAAGCAGAAGAAGAGGAGGTCGATCCTAAGGAAGTTCGGGGATTTCTTC 1499 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 CGGAGGAGAAGCTTGTACAAGCGCAACCTAGCGCCGGTGATTCACTACTAGTAGATTTTT 1559 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 ACTACTTAGGTTGATCTAGATTAGATGCTTTAATGTTTTCGCGTGATGCTTTGTATGGTA 1619 consensus_8435#1 ------------------------------------------------------------ consensus_8435#0 CGTGTTTGATTGAAATGATTAGCAAAAAAAAAAACGCCCA 1659 consensus_8435#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||