cluster # 844

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Oryza sativa
cluster # 844 cluster # 844 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_844#0 length = 379 sequences # 1

consensus_844#1 length = 333 sequences # 1

consensusID : consensus_844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAAAAAATTTATAAAAACTTTTTGGCGGGGGTTTTTGGACCCCCCGGGAAAAAAATTTTCCTTTAAGGGCGGACCACCTCTTTCATCCCAGTAGGGGCCCAGGGGCAATTTTTTTAAACCCGGGGGGACTACCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAATAAGGGCCAAAGCGGTTCCCGGGGGAAAATGGTTTCCCCTTAAAATTTCCCCAAAAAATACAACCCGGAACCATAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGACCTACCCCCCTTTAATGGGGTGGCCCCCACGGCCCCTTTTCC]

[+] EMBL CF337858             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAAAAAATTTATAAAAACTTTTTGGCGGGGGTTTTTGGACCCCCCGGGAAAAAAATTTTCCTTTAAGGGCGGACCACCTCTTTCATCCCAGTAGGGGCCCAGGGGCAATTTTTTTAAACCCGGGGGGACTACCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAATAAGGGCCAAAGCGGTTCCCGGGGGAAAATGGTTTCCCCTTAAAATTTCCCCAAAAAATACAACCCGGAACCATAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGACCTACCCCCCTTTAATGGGGTGGCCCCCACGGCCCCTTTTCC]




>consensus_844#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
CCAAAAAAAATTTATAAAAACTTTTTGGCGGGGGTTTTTGGACCCCCCGGGAAAAAAATT
TTCCTTTAAGGGCGGACCACCTCTTTCATCCCAGTAGGGGCCCAGGGGCAATTTTTTTAA
ACCCGGGGGGACTACCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAATAAGGGCCA
AAGCGGTTCCCGGGGGAAAATGGTTTCCCCTTAAAATTTCCCCAAAAAATACAACCCGGA
ACCATAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGACCTACCCCCCTTTAATGGGGTGG
CCCCCACGGCCCCTTTTCC

consensusID : consensus_844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAACTAAAAACCCGGGGAAAAGGCAAAGGGTTTCTCCCCCTCCACCCCTGGGAAGGGCCCAGGGGCAAATTTTTTAAACCCGGGGGAACTACCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAATAAGGGCAAAACCGGTTCCCGGGGAAAAATGGTTTCCCCCTAAAATTCCCCAAAAAAATACAACCGGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGCCCCACCCCCCTTTATTGGGGGGGCCCCCCCGG]

[+] EMBL CF331405             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAACTAAAAACCCGGGGAAAAGGCAAAGGGTTTCTCCCCCTCCACCCCTGGGAAGGGCCCAGGGGCAAATTTTTTAAACCCGGGGGAACTACCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAATAAGGGCAAAACCGGTTCCCGGGGAAAAATGGTTTCCCCCTAAAATTCCCCAAAAAAATACAACCGGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGCCCCACCCCCCTTTATTGGGGGGGCCCCCCCGG]




>consensus_844#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTAAAAACTAAAAACCCGGGGAAAAGGCAAAGGGTTTCTCCCCCTCCACCCCTGGGA
AGGGCCCAGGGGCAAATTTTTTAAACCCGGGGGAACTACCCCTTTTAGGGGGGGTAAATT
TGGACCTGGGGGAAATAAGGGCAAAACCGGTTCCCGGGGAAAAATGGTTTCCCCCTAAAA
TTCCCCAAAAAAATACAACCGGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGG
CCCCACCCCCCTTTATTGGGGGGGCCCCCCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_844#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_844#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                     ************************************************************

consensus_844#0      CCAAAAAAAATTTATAAAAACTTTTTGGCGGGGGTTTTTGGACCCCCCGGGAAAAAAATT 120
consensus_844#1      TTTTTAAAAACT---AAAAAC-------------------------CCGGGGAAAAGGC- 91
                          ***** *   ******                         ***** ****    

consensus_844#0      TTCCTTTAAGGGCGGACCACCTCTTTCATCCCAGTAGGGGCCCAGGGGCAATTTTTTTAA 180
consensus_844#1      -------AAAGGGTTTCTCCCCCTCCACCCCTGGGAAGGGCCCAGGGGCAAATTTTTTAA 144
                            ** **    *  ** **     **  * * ************** ********

consensus_844#0      ACCCGGGGGGACTACCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAATAAGGGCCA 240
consensus_844#1      ACCCGGGGGAACTACCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAATAAGGGCAA 204
                     ********* ************************************************ *

consensus_844#0      AAGCGGTTCCCGGGGGAAAATGGTTTCCCCTTAAAATTTCCCCAAAAAATACAACCCGGA 300
consensus_844#1      AACCGGTTCCCGGGGAAAAATGGTTTCCCCCTAAAATTCCCCAAAAAAATACAACCGGAA 264
                     ** ************ ************** ******* *** ************* * *

consensus_844#0      ACCATAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGACCTACCCCCCTTTAATGGGGTGG 360
consensus_844#1      ACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGCCCCACCCCCCTTTATTGGGGGGG 324
                     **** ******************************* ** *********** ***** **

consensus_844#0      CCCCCACGGCCCCTTTTCC 379
consensus_844#1      CCCCCCCGG---------- 333
                     ***** ***