cluster # 8456

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Oryza sativa
cluster # 8456 cluster # 8456 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8456#0 length = 857 sequences # 3

consensus_8456#1 length = 342 sequences # 1
consensus_8456#2 length = 283 sequences # 1

consensusID : consensus_8456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 857
fasta sequence

                              [GCGACTGCGAGGCGAACTCGTCACCACACACTCCTCCTCCCTCATCGCCGCCGTCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTCTCCCCCGTACTCCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCCTCCTCGCCGTGACGACCGCACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTCCACCCCCTCCAAGAACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGCGGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCGGCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTCTGGGACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCACCGGGTTCGCGTACACGCTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCCGTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCCGACTTCATCTACACCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCACGTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGCTTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAACGAAATTGGAGGATTTAATCCGAAAAAAAAAAAATAAAAAGA]

[+] EMBL AK065746             [GCGACTGCGAGGCGAACTCGTCACCACACACTCCTCCTCCCTCATCGCCGCCGTCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTCTCCCCCGTACTCCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCCTCCTCGCCGTGACGACCGCACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTCCACCCCCTCCAAGAACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGCGGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCGGCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTCTGGGACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCACCGGGTTCGCGTACACGCTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCCGTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCCGACTTCATCTACACCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCACGTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGCTTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAACGAAATTGGAGGATTTAATCCGA                   ]
[+] EMBL CB683241             [                                          CATCGCCGCCGTCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTCTCCCCCGTACTCCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCCTCCTCGCCGTGACGACCGCACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTCCACCCCCTCCAAGAACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGCGGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCGGCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTCTGGGACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCACCGGGTTCGCGTACACGCTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCCGTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCCGACTTCATCTACACCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCACGTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGCTTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAACGA                                       ]
[-] EMBL CB683648             [                                                                                                                                                                                                                                                                                                                     AACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGCGGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCGGCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTTTGGGACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCCCCGGGTTCGCGTACACGCTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCCGTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCCGACTTCATTTACCCCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCACGTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGCTTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAGGGAAATTGGGGGATTTAAAAAAAAAAAAAAAAAATAAAAAGA]




>consensus_8456#0
GCGACTGCGAGGCGAACTCGTCACCACACACTCCTCCTCCCTCATCGCCGCCGTCCTCAC
CTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCC
ACCTACCTCGCCTCTCCCCCGTACTCCACCACCACCCCCGCCACCTCCGCCTCCATGGCC
GCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCCTCC
TCGCCGTGACGACCGCACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTCCACC
CCCTCCAAGAACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGCG
GGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCGG
CGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTCTGGG
ACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCACCGGGTTCGCGTACACGC
TGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCCG
TCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCCG
ACTTCATCTACACCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCACG
TGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGCT
TGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAACGAAATTGGAGGATTTAATCCGAAA
AAAAAAAAATAAAAAGA

consensusID : consensus_8456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [CCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTANAGNCCGTACNGCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCTCCTNGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGNTCTNCACCNNCTNCAAGAACCAGCGGAGGGAGAAGTNAGCGGCGGTGGCGGGGAAGACAGGACGTGCGGGNTCNGACGTGGGNGCTGATCGGGGCATNGNGGCGGC]

[+] EMBL OSC04621             [CCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTANAGNCCGTACNGCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCTCCTNGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGNTCTNCACCNNCTNCAAGAACCAGCGGAGGGAGAAGTNAGCGGCGGTGGCGGGGAAGACAGGACGTGCGGGNTCNGACGTGGGNGCTGATCGGGGCATNGNGGCGGC]




>consensus_8456#1
CCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGC
TCCTCCACCTACCTCGCCTANAGNCCGTACNGCACCACCACCCCCGCCACCTCCGCCTCC
ATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACC
GCTCCTNGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGNTCTN
CACCNNCTNCAAGAACCAGCGGAGGGAGAAGTNAGCGGCGGTGGCGGGGAAGACAGGACG
TGCGGGNTCNGACGTGGGNGCTGATCGGGGCATNGNGGCGGC

consensusID : consensus_8456#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence

                              [TCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTNGCCTNNANCCCGTACTCCACCACCACCCCCGNCACCTNCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTNCCTTCCCCTCAGCGAACGAACCAGCANNGTCTTCTTGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTTCANCTTGTTGCAAGAACCAGNGGAGGGAGAAGTCAGCGGN]

[+] EMBL OS0791A              [TCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTNGCCTNNANCCCGTACTCCACCACCACCCCCGNCACCTNCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTNCCTTCCCCTCAGCGAACGAACCAGCANNGTCTTCTTGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTTCANCTTGTTGCAAGAACCAGNGGAGGGAGAAGTCAGCGGN]




>consensus_8456#2
TCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCG
CTCCTCCACCTACCTNGCCTNNANCCCGTACTCCACCACCACCCCCGNCACCTNCGCCTC
CATGGCCGCACCACCGTCTTCCAAGCTCGCCTNCCTTCCCCTCAGCGAACGAACCAGCAN
NGTCTTCTTGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTC
CTTCANCTTGTTGCAAGAACCAGNGGAGGGAGAAGTCAGCGGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8456#0      GCGACTGCGAGGCGAACTCGTCACCACACACTCCTCCTCCCTCATCGCCGCCGTCCTCAC 60
consensus_8456#1      ------------------------------------------------------CCTCAC 6
consensus_8456#2      -----------------------------------------------------TCCTCAC 7
                                                                            ******

consensus_8456#0      CTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCC 120
consensus_8456#1      CTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCC 66
consensus_8456#2      CTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCC 67
                      ************************************************************

consensus_8456#0      ACCTACCTCGCCTCTCCCCCGTACTCCACCACCACCCCCGCCACCTCCGCCTCCATGGCC 180
consensus_8456#1      ACCTACCTCGCCTANAGNCCGTACNGCACCACCACCCCCGCCACCTCCGCCTCCATGGCC 126
consensus_8456#2      ACCTACCTNGCCTNNANCCCGTACTCCACCACCACCCCCGNCACCTNCGCCTCCATGGCC 127
                      ******** ****     ******  ************** ***** *************

consensus_8456#0      GCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCCTCC 240
consensus_8456#1      GCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGC-TCC 185
consensus_8456#2      GCACCACCGTCTTCCAAGCTCGCCTNCCTTCCCCTCAGCGAACGAACCAGCANNGTCTTC 187
                      ************************* **************************  *  * *

consensus_8456#0      TCGCCGTGACGACCGCACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTCCACC 300
consensus_8456#1      TNGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGNTC-TNCACC 244
consensus_8456#2      TTGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTTCANC 247
                      * ************* ********************************** ** * ** *

consensus_8456#0      CC-CTCCAAGAACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGC 359
consensus_8456#1      NN-CTNCAAGAACCAGCGGAGGGAGAAGTNAGCGGCGGTGGCGGGGAAGACAGGACGTGC 303
consensus_8456#2      TTGTTGCAAGAACCAGNGGAGGGAGAAGTCAGCGGN------------------------ 283
                          * ********** ************ *****                         

consensus_8456#0      GGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCG 419
consensus_8456#1      GGGNTCN-GACGTGGGNGCTGATCGGGGC-ATNGNGGCGGC------------------- 342
consensus_8456#2      ------------------------------------------------------------
                                                                                  

consensus_8456#0      GCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTCTGG 479
consensus_8456#1      ------------------------------------------------------------
consensus_8456#2      ------------------------------------------------------------
                                                                                  

consensus_8456#0      GACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCACCGGGTTCGCGTACACG 539
consensus_8456#1      ------------------------------------------------------------
consensus_8456#2      ------------------------------------------------------------
                                                                                  

consensus_8456#0      CTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCC 599
consensus_8456#1      ------------------------------------------------------------
consensus_8456#2      ------------------------------------------------------------
                                                                                  

consensus_8456#0      GTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCC 659
consensus_8456#1      ------------------------------------------------------------
consensus_8456#2      ------------------------------------------------------------
                                                                                  

consensus_8456#0      GACTTCATCTACACCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCAC 719
consensus_8456#1      ------------------------------------------------------------
consensus_8456#2      ------------------------------------------------------------
                                                                                  

consensus_8456#0      GTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGC 779
consensus_8456#1      ------------------------------------------------------------
consensus_8456#2      ------------------------------------------------------------
                                                                                  

consensus_8456#0      TTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAACGAAATTGGAGGATTTAATCCGAA 839
consensus_8456#1      ------------------------------------------------------------
consensus_8456#2      ------------------------------------------------------------
                                                                                  

consensus_8456#0      AAAAAAAAAATAAAAAGA 857
consensus_8456#1      ------------------
consensus_8456#2      ------------------