These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3312 fasta sequence [TCGGCGCGGTGGCGCGGCGGCGGCGGGGCCGGGGGGAAGGCGAAGGCGGTGTTCAAGCTGCAGTTCCACGCCACGCAGGTGCCGGAGGTGGGATGGGAGGCGATGATGGTGGTGGTGACGCCGCGGGACGCGGGCCGGCCGACGGCGAGGACGGAGAGCGCGCAGGTCGCCGACGGCGCGTGCCAGTGGCCCGCCCCGGTCTACGAGGCCACCAAGCTCCCTTCCTCCGGCAAGGACAAGATCTACCAGTTCCTCGTCTACGACACGGGCTCGACCAAGGCGGCGCTGCTCGGGGAGGCGACGCTGAACCTGTCCGAGTACGCCGACGCGTTCAAGCCGTGGATCGTCACGCTGCCGCTCAGCGGAAGCCCCGGCGCGCAGCTGCACGTGACCATCCAGCGGGTGGTGGGTGGTGGTGGCGGCGGCGGCGGTGGGTGCGGTGACGACGCCAGTGAGAACGGCGGCGACGTGTCGCCGGTGGTGGCGAGGACGCCGCCGAGGAAGACGCTGCAGAGCCAGCTGAGCCGGTGCGAGGACGAGGAGGCGGAGAAGGCGAGGGCGGCGGCGGCGGCGGCGGATGCGATGAGCCCTATGCAAGACGGATTGGTGATAAACAAACCTCCTGGGATGAGGTTTTCAGCGAGAAGAAACATGCGTGGGCCTGTCGATCACCTTCACAATTCCAACAGCTTTGATGCCATTTCGGTGTCGGGTTCAGATGGGAGCTCAGGGAGATTTACCCCCAAAAACAATGCAAGTATGCACAGCACATTTCTTCAGGAGGGCACCAATACCCTCTCACCCCTGAGGAACACATTGACCAGCTCCGGTGACTGGTCGGGAAGCTCAGCTCCTGATGCTAGCACCGACGGGTCAACCAGCAACTCCGGTGAGGCGGGGTTGAGGGAGGCAGAGGATGATGTGGAGAAGCTAAGAAGTGAGATAGCCACTTTGACGCGGAAATTGGATGTCTCCGATATGGAGTTGCAAACACTGAGAAAGCAAATTGTGAAGGAGAGTCGACGAGGGCAAGATCTTTCCAAGGAAGTGGGTAGCTTGAGGGATGAGAGGGATGCTCTCAGAAGAGAATGTGAAGCACTCAGAGGGATGAAAAAGACTATCCATGATGCAAACGGATCTGGTAAAAGACTATCAAGCGGGGAAGACCCGTGGTCGCAGATTGAAGAGCTAAAGCAAGAACTGGGCCATGAGAAGAATCTAAATGGAGATCTGCATTTACAATTGCAGAAAATGCAGGAATCCAACTCTGAGCTACTTCTGGCTGTGAAGGATCTTGATGAGATGCTGGAGCAGAAGAACAAGGAGATATCACTTTTGCATGAAGAAACACTGGAGGATCCCCAGGAGGCTGAATATGAGCTAGCATTGTCAAATGTGCATAATGCTGGACACAAAATAGACATATCTGAAACAAGTTCAGTTCAAGAGAAAGAAGATGAGCTGATGCTGGATGCATTGGCAAAGACAACCGATGGCATCGCTACCTCTGAACTTCAAAATAAAATTGTTGAGCTGAGCAATGAAATCGAGTTGTATAAGAAGGACCGTGAAGACCTCGAGATGCAAATGGAGCAACTTGCACTTGACTATGAGATCCTGAAGCAAGAGAACCATGACATCTCTTCTAGGCTGGAGCAAACACAGTTGAGGGAGCAGCTAAGGATGCAGTACGAGTGTTCAGCACATTTGTCTATAATAAGCGATCTTGAAGCCAATGTTGAGAGCCTGGAGAATGAACTCCAGGAACAATCCAAAAGATTAGAGGCTGACATACAAGAGGTAATGCGTGCAAAGGTTGAACAAGAGCAAAGGGCCATAAAGGCCGAGGAGTCCCTGAGGAAAGCAAGATGGAACAATGCCACTACTGCTGAACGACTCCAGGAGGAATTCAAGATGTTGTCTTCACAAGTTTCCTCTGCTTTCAGCGCAAATGAACAGTTGCTTATGCAAGCTAGAAAAGAGGCTGCAGAGCTACAGTTACAGAAGGGCCAGTTGGAAGAATTACTACAGAAGGCACAAGAAGATCTTGGATCAATCCAAGAACAACACCGAGTGAAGGTTCAACAGTTACTGACCTTAGTGGATTTCAAGTCAAAGGAGACAGACAGGCTGGTAATGGAGCTTAAAAGCAAGAGTGATGAGTTCCAGAATCAGAAGAGATGCAACGAAGCAAAGTTAAGTGTTCTCTCAGAAGAAATAGATCAACTCAAAGCTAAGATTGAGAATCTGTCAAATGAACGAGACAATCTCTTCGAAGAGAATGAGCAGAAGGACAAGGAATTAGCTGCAAATTGTCAAAAGGATATGTTCTTGCAGGATAGAGATGCTGAGATAGCTTTGCTCAACAAAGAACTTGCTTCAATCAAGGACCAAGTGCAGACATATTTAGAGGAGATAAACACTTTAAAAAGTTCAAAGAATGAAAAGGAGGAGATGATCGAGAGGCTGCAATCAGAGATTAGATCGTTGAAATTCGAGTATGACAACCTGAAAATTTTGATGTCCACTAATGACTCTGAGAAACACAACCTTGCTTCCCAAGTGCTGAAGCTTCGGAGAGCCCTTGAAAGCAGGGAGGATGTGAAACAAAATGGTGTCAAATCAGATGAGGACAACCACCATGCTACTTCTAAGCGCATCAAGCATGACGACGGCACCACCGGGAGCCGTAACGTGCTGCCAAGCACCAACAGACACAATGCAAATGGTGACTGCAATGGGCATGACAGGAGGGATGCAGCTCATGATCAGTCGGTAAAGGAGCTGGAAATCCTGAAGGAGAGGAACACTGCACTGGAGGAAGAGCTCAAAGAACTGCACGGGCGGTACTCGGAGATAAGCCTGAAATTCGCGGAAGTCGAAGGCGAGAGGCAGCAGCTGGTGATGACGGTGCGCGCCCTGAAGAACTCCCTGAGGTGATCTTGATCTATGCTCCTCACACACGTTGTAGTACAAAAGATTTAGATGATACCCCGGAGGGTTTTGTATAGGCAGGCAGCTGGATGAGCTGTATGAAATGAGGACAATATCTAGGTGCTCTGCAGAGGCCACAGGTACCCAGGTTAGC-AGGGTGTGGTCAGTCACAATACACAGCATTGTAGATCTCCCCCCACAATAATATTTCTTTCTTCTTCTTCTTCCTCTTCCTCTTCCATTGGTGTGTGTAACTGTAACATGAATTAGCTTCTCATCTAGA--GTGTTGTGTTGTATAATTCCTGATGCTTGGCTTTTGTTGTGAAGAAAGAAAAGTGAGATAAGAAAATATGGTGTGACCAGTTCTATCTTAAAAAA] [+] EMBL AY224548 [TCGGCGCGGTGGCGCGGCGGCGGCGGGGCCGGGGGGAAGGCGAAGGCGGTGTTCAAGCTGCAGTTCCACGCCACGCAGGTGCCGGAGGTGGGATGGGAGGCGATGATGGTGGTGGTGACGCCGCGGGACGCGGGCCGGCCGACGGCGAGGACGGAGAGCGCGCAGGTCGCCGACGGCGCGTGCCAGTGGCCCGCCCCGGTCTACGAGGCCACCAAGCTCCCTTCCTCCGGCAAGGACAAGATCTACCAGTTCCTCGTCTACGACACGGGCTCGACCAAGGCGGCGCTGCTCGGGGAGGCGACGCTGAACCTGTCCGAGTACGCCGACGCGTTCAAGCCGTGGATCGTCACGCTGCCGCTCAGCGGAAGCCCCGGCGCGCAGCTGCACGTGACCATCCAGCGGGTGGTGGGTGGTGGTGGCGGCGGCGGCGGTGGGTGCGGTGACGACGCCAGTGAGAACGGCGGCGACGTGTCGCCGGTGGTGGCGAGGACGCCGCCGAGGAAGACGCTGCAGAGCCAGCTGAGCCGGTGCGAGGACGAGGAGGCGGAGAAGGCGAGGGCGGCGGCGGCGGCGGCGGATGCGATGAGCCCTATGCAAGACGGATTGGTGATAAACAAACCTCCTGGGATGAGGTTTTCAGCGAGAAGAAACATGCGTGGGCCTGTCGATCACCTTCACAATTCCAACAGCTTTGATGCCATTTCGGTGTCGGGTTCAGATGGGAGCTCAGGGAGATTTACCCCCAAAAACAATGCAAGTATGCACAGCACATTTCTTCAGGAGGGCACCAATACCCTCTCACCCCTGAGGAACACATTGACCAGCTCCGGTGACTGGTCGGGAAGCTCAGCTCCTGATGCTAGCACCGACGGGTCAACCAGCAACTCCGGTGAGGCGGGGTTGAGGGAGGCAGAGGATGATGTGGAGAAGCTAAGAAGTGAGATAGCCACTTTGACGCGGAAATTGGATGTCTCCGATATGGAGTTGCAAACACTGAGAAAGCAAATTGTGAAGGAGAGTCGACGAGGGCAAGATCTTTCCAAGGAAGTGGGTAGCTTGAGGGATGAGAGGGATGCTCTCAGAAGAGAATGTGAAGCACTCAGAGGGATGAAAAAGACTATCCATGATGCAAACGGATCTGGTAAAAGACTATCAAGCGGGGAAGACCCGTGGTCGCAGATTGAAGAGCTAAAGCAAGAACTGGGCCATGAGAAGAATCTAAATGGAGATCTGCATTTACAATTGCAGAAAATGCAGGAATCCAACTCTGAGCTACTTCTGGCTGTGAAGGATCTTGATGAGATGCTGGAGCAGAAGAACAAGGAGATATCACTTTTGCATGAAGAAACACTGGAGGATCCCCAGGAGGCTGAATATGAGCTAGCATTGTCAAATGTGCATAATGCTGGACACAAAATAGACATATCTGAAACAAGTTCAGTTCAAGAGAAAGAAGATGAGCTGATGCTGGATGCATTGGCAAAGACAACCGATGGCATCGCTACCTCTGAACTTCAAAATAAAATTGTTGAGCTGAGCAATGAAATCGAGTTGTATAAGAAGGACCGTGAAGACCTCGAGATGCAAATGGAGCAACTTGCACTTGACTATGAGATCCTGAAGCAAGAGAACCATGACATCTCTTCTAGGCTGGAGCAAACACAGTTGAGGGAGCAGCTAAGGATGCAGTACGAGTGTTCAGCACATTTGTCTATAATAAGCGATCTTGAAGCCAATGTTGAGAGCCTGGAGAATGAACTCCAGGAACAATCCAAAAGATTAGAGGCTGACATACAAGAGGTAATGCGTGCAAAGGTTGAACAAGAGCAAAGGGCCATAAAGGCCGAGGAGTCCCTGAGGAAAGCAAGATGGAACAATGCCACTACTGCTGAACGACTCCAGGAGGAATTCAAGATGTTGTCTTCACAAGTTTCCTCTGCTTTCAGCGCAAATGAACAGTTGCTTATGCAAGCTAGAAAAGAGGCTGCAGAGCTACAGTTACAGAAGGGCCAGTTGGAAGAATTACTACAGAAGGCACAAGAAGATCTTGGATCAATCCAAGAACAACACCGAGTGAAGGTTCAACAGTTACTGACCTTAGTGGATTTCAAGTCAAAGGAGACAGACAGGCTGGTAATGGAGCTTAAAAGCAAGAGTGATGAGTTCCAGAATCAGAAGAGATGCAACGAAGCAAAGTTAAGTGTTCTCTCAGAAGAAATAGATCAACTCAAAGCTAAGATTGAGAATCTGTCAAATGAACGAGACAATCTCTTCGAAGAGAATGAGCAGAAGGACAAGGAATTAGCTGCAAATTGTCAAAAGGATATGTTCTTGCAGGATAGAGATGCTGAGATAGCTTTGCTCAACAAAGAACTTGCTTCAATCAAGGACCAAGTGCAGACATATTTAGAGGAGATAAACACTTTAAAAAGTTCAAAGAATGAAAAGGAGGAGATGATCGAGAGGCTGCAATCAGAGATTAGATCGTTGAAATTCGAGTATGACAACCTGAAAATTTTGATGTCCACTAATGACTCTGAGAAACACAACCTTGCTTCCCAAGTGCTGAAGCTTCGGAGAGCCCTTGAAAGCAGGGAGGATGTGAAACAAAATGGTGTCAAATCAGATGAGGACAACCACCATGCTACTTCTAAGCGCATCAAGCATGACGACGGCACCACCGGGAGCCGTAACGTGCTGCCAAGCACCAACAGACACAATGCAAATGGTGACTGCAATGGGCATGACAGGAGGGATGCAGCTCATGATCAGTCGGTAAAGGAGCTGGAAATCCTGAAGGAGAGGAACACTGCACTGGAGGAAGAGCTCAAAGAACTGCACGGGCGGTACTCGGAGATAAGCCTGAAATTCGCGGAAGTCGAAGGCGAGAGGCAGCAGCTGGTGATGACGGTGCGCGCCCTGAAGAACTC ] [+] EMBL AK064441 [ TAGTGGATTTCAAGTCAAAGGAGACAGACAGGCTGGTAATGGAGCTT AAAGCAAGAGTGATGAGTTCCAGAATCAGAAGAGATGCAACGAAGCAAAGTTAAGTGTTCTCTCAGAAGAAATAGATCAACTCAAAGCTAAGATTGAGAATCTGTCAAATGAACGAGACAATCTCTTCGAAGAGAATGAGCAGAAGGACAAGGAATTAGCTGCAAATTGTCAAAAGGATATGTTCTTGCAGGATAGAGATGCTGAGATAGCTTTGCTCAACAAAGAACTTGCTTCAATCAAGGACCAAGTGCAGACATATTTAGAGGAGATAAACACTTTAAAAAGTTCAAAGAATGAAAAGGAGGAGATGATCGAGAAGCTGCAATCAGAGATTAGATCGTTGAAATTCGAGTATGACAACCTGAAAATTTTGATGTCCACTAACGACTCTGAGAAACACAACCTTGCTTCCCAAGTGCTGAAGCTTCGGAGAGCCCTTGAAAGCAGGGAGGATGTGAAACAAAATGGTGTCAAATCAGATGAGGACAACCACCATGCTACTTCTAAGCGCATCAAGCATGACGACGGCACCACCGGGAGCTGTAACGTGCTGCCAAGCACCAACAGACACAATGCAAATGGTGACTGCAATGGGCATGACAGGAGGGATGCAGCTCATGATCAGTCGGTAAAGGAGCTGGAAATCCTGAAGGAGAGGAACACTGCACTGGAGGAAGAGCTCAAAGAACTGCACGGGCGGTACTCGGAGATAAGCCTGAAATTCGCGGAAGTCGAAGGCGAGAGGCAGCAGCTGGTGATGACGGTGCGCGCCCTGAAGAACTCCCTGAGGTGATCTTGATCTATGCTCCTCACACACGTTGTAGTACAAAAGATTTAGATGATACCCCGGAGGGTTTTGTATAGGCAGGCAGCTGGATGAGCTGTATGAAATGAGGACAATATCTAGGTGCTCTGCAGAGGCCACAGGTACCCAGGTTAGC AGGGTGTGGTCAGTCACAATACACAGCATTGTAGATCTCCCCCCACAATAATATTTCTTTCTTCTTCTTCTTCCTCTTCCTCTTCCATTGGTGTGTGTAACTGTAACATGAATTAGCTTCTCATCTAGA GTGTTGTGTTGTATAATTCCTGATGCTTGGCTTTTGTTGTGAAGAAAGAAAA ] [+] EMBL AI978506 [ AAATGGTGACTGCAATGGGCATGACAGGAGGGATGCAGCTCATGATCAGTCGGTAAAGGAGCTGGAAATCCTGAAGGAGAGGAACACTGCACTGGAGGAAGAGCTCAAAGAACTGCACGGGCGGTACTCGGAGATAAGCCTGAAATTCGCGGAAGTCGAAGGCGAGAGGCAGCAGCTGGTGATGACGGTGCGCGCCCTGAAGAACTCCCTGAGGTGATCTTGATCTATGCTCCTCACACACGTTGTAGTACAAAAGATTTAGATGATACCCCNNANNGTTTTGTATAGGCAGGCAGCTGGATGAGCTGTATGAAATGAGGACAATATCTNNNTNCTCTG ] [-] EMBL AI978505 [ GATCTATGCTCCTCACACACGTTGTAGTNNAAAAGATTTAGATGATACCCCGGAGNGTTTTGTATANNNANNNNGCTGGATGAGCTGTATGAAATGAGGACAATATCTAGGTGCTCTGCAGANNCCACAGGTACCCAGGTTAGC AGGGTGTGGTCAGTCACAATACACAGCATTGTAGATCTCCCCCCNNAATAATATTTCTTTCTTCTTCTTCTTCCTCTTCCTCTTCCATTGGTGTGTGTAACTGTAACATGAATTAGCTTCTCATCTAGA GTGTTGTGTTGTATAATTCCTGATGCTTGGCTTTTGTTGTGAAGAAAGAAAAGTGAGATA ] [+] EMBL BI801417 [ GATGATACCCCGGAGGGTTTTGTATAGGCAGGCAGCTGGATGAGTTGTATGAAATGAGGACAATATCTAGGTGCTCTGCAGAGGCCACAGGTACCCAGGTTAGCAAGGGTGTGGTCAGTCACAATACACAGCATTGTAGATCT CCCCCACAATAATATTTCT TTCTTCTTCTTCCTCTTCCTCTTCCATTGGTGTGTGTAACTGTAACATGAATTAGCTTCTCATCTAGAGTGTGTTGTGTTGTATAATTCCTGATGCTTGGCTTTTGTTGTGAAGAAAGAAAAGTGAGATAAGAAAATATGGTGTGACCAGTTCTATCTTAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||