cluster # 8472

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Oryza sativa
cluster # 8472 cluster # 8472 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8472#0 length = 690 sequences # 4

consensus_8472#1 length = 329 sequences # 1

consensusID : consensus_8472#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 690
fasta sequence

                              [CGACGGCAACTGGCGACGGTGACGACGGTGAGCACGACGGAAGCGGCGACGACGGCGACCATGAAGGAAGCTGCGACGACGGCAACCACGAAGGAAGCGGTGACGACGGCGACCACGACCATCCTGTGCGTGCTGTCCTTCACTGACTCGCTATCGTACCTCGGGTTCCATGTCAGGAGCGTCGACAAGAGGCAGATCAGCCGTAACTACCTCTACTGGGGCGCCGCGCCCTCCCATCCCATCCTCTCCCCTCTCCCAGATTTGTCTGTGGGGAGGAGGATGGGCAATGGGAGGACGGATCCGCCCCGGCGGTGGCGCGGGTAGCACGGCCGCGGGGCCTCGGGAGGTGGAGCGCGACCGTCGGCCTTGACCTCGTCACGACCGACGCCG-CCGGGCCGTGGGCGGTGGTGCTCAGATTTCAATGGATTTCTGTGGATTTGTGTGCATTTGTGTAGATTTATGTGGCTTGTGAATGGAAAATATGTGTTGATTTGTGTGGATTTGTTTTGATTGTGAATGGAAAATTTTGACTGTTTTTATTGTAAATTGTTGGTGTAAATTTATGTGAATTTGTGAATCAAGGAGTGGATTTAGGAATAATTTGAATTGGTGTTGACAAAGGTGAATGGACCGGTGTTGCNCCGTTATTTTTTTTTTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU096954             [CGACGGCAACTGGCGACGGTGACGACGGTGAGCACGACGGAAGCGGCGACGACGGCGACCATGAAGGAAGCTGCGACGACGGCAACCACGAAGGAAGCGGTGACGACGGCGACCACGACCATCCTGTGCGTGCTGTCCTTCACTGACTCGCTATCGTACCTCGGGTTCCATGTCAGGAGCGTCGACAAGAGGCAGATCAGCCGTAACTACCTCTACTGGGGCGCCGCGCCCTCCCATCCCATCCTCTCCCCTCTCCCAGATTTGTCTGTGGGGAGGAGGATGGGCAATGGGAGGACGGATCCGCCCCGGCGGTGGCGCGGGTAGCACGGNCGCGGNGCCTCGGGAGGTGGAGCGCGACC                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB683477             [                                                                                                                                                                                                                                                                              GGGAGGAGGATGGGCAATGGGAGGACGGATCCGCCCCGGCGGTGGCGCGGGTAGCACGGCCGCGGGGCCTCGGGAGGTGGAGCGCGACCGTCGGCCTTGACCTCGTCACGACCGACGCCG CCGGGCCGTGGGCGGTGGTGCTCAGATTTCAATGGATTTCTGTGGATTTGTGTGCATTTGTGTAGATTTATGTGGCTTGTGAATGGAAAATATGTGTTGATTTGTGTGGATTTGTTTTGATTGTGAATGGAAAATTTTGACTGTTTTTATTGTAAATTGTTGGTGTAAATTTATG                                                                                                                             ]
[+] EMBL CB683926             [                                                                                                                                                                                                                                                                                          GGCAATGGGAGGACGGATCCGCCCCGGCGGTGGCGCGGGTAGCACGGCCGCGGGGCCTCGGGAGGTGGAGCGCGACCGTCGGCCTTGACCTCGTCACGACCGACGCCG CCGGGCCGTGGGCGGTGGTGCTCAGATTTCAATGGATTTCTGTGGATTTGTGTGCATTTGTGTAGATTTATGTGGCTTGTGAATGGAAAATATGTGTTGATTTGTGTGGATTTGTTTTGATTGTGAATGGAAAATTTTGACTGTTTTTATTGTAAATTGTTGGTGTAAATTTATGTGAATTTGTGAATCAAGGAGTGG                                                                                                      ]
[+] EMBL AU096955             [                                                                                                                                                                                                                                                                                                                                                                                GACCTCGTCACGACCGACGCCGCCCGGNCCGTGGCCGGTGGTGCTCAGATTTCAATGGATTTCTGTGNATTTGTGTGCATTTGTGTAGATTTATGTGGCTTGTGAATGGAAAATATGTGTTGATTTGTGTGGATTTGTTTTGATTGTGAATGGAAAATTTTGACTGTTTTTATTGTAAATTGTTGGTGTAAATTTATGTGAATTTGTGAATCAAGGAGTGGATTTAGGAATAATTTGAATTGGTGTTGACAAAGGTGAATGGACCGGTGTTGCNCCGTTATTTTTTTTTTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8472#0
CGACGGCAACTGGCGACGGTGACGACGGTGAGCACGACGGAAGCGGCGACGACGGCGACC
ATGAAGGAAGCTGCGACGACGGCAACCACGAAGGAAGCGGTGACGACGGCGACCACGACC
ATCCTGTGCGTGCTGTCCTTCACTGACTCGCTATCGTACCTCGGGTTCCATGTCAGGAGC
GTCGACAAGAGGCAGATCAGCCGTAACTACCTCTACTGGGGCGCCGCGCCCTCCCATCCC
ATCCTCTCCCCTCTCCCAGATTTGTCTGTGGGGAGGAGGATGGGCAATGGGAGGACGGAT
CCGCCCCGGCGGTGGCGCGGGTAGCACGGCCGCGGGGCCTCGGGAGGTGGAGCGCGACCG
TCGGCCTTGACCTCGTCACGACCGACGCCGCCGGGCCGTGGGCGGTGGTGCTCAGATTTC
AATGGATTTCTGTGGATTTGTGTGCATTTGTGTAGATTTATGTGGCTTGTGAATGGAAAA
TATGTGTTGATTTGTGTGGATTTGTTTTGATTGTGAATGGAAAATTTTGACTGTTTTTAT
TGTAAATTGTTGGTGTAAATTTATGTGAATTTGTGAATCAAGGAGTGGATTTAGGAATAA
TTTGAATTGGTGTTGACAAAGGTGAATGGACCGGTGTTGCNCCGTTATTTTTTTTTTTTT
TATAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8472#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [ATNTTGCCGATGGGAGGAGGCCNCCGCTGGGGAGGACGGGCGCGGGGAGGACGGATCCGCCCCGGCGGCGGCTCGAGGAGCACGGATCCGCCCCGGCGGTGGCGCGGGGAGCACGACCGCGGGGCCTCGACCTCGTCACGACCGACGCCGTCGGGCCGCGGGCGGTGGTGCTCGGATTTCTGTGAATTTATGTAGATTTGTGTGCATTTGTGTGGATTTCTGTTGATCGTGAATGGAAAATATCGGTTGATTTGTGTGCAATGTGAATGGAAAATTCTGACTGTTTTTATTGTAAATTGTTGATGTAAATTTATGTGAATTTGTGAAAA]

[+] EMBL AU173153             [ATNTTGCCGATGGGAGGAGGCCNCCGCTGGGGAGGACGGGCGCGGGGAGGACGGATCCGCCCCGGCGGCGGCTCGAGGAGCACGGATCCGCCCCGGCGGTGGCGCGGGGAGCACGACCGCGGGGCCTCGACCTCGTCACGACCGACGCCGTCGGGCCGCGGGCGGTGGTGCTCGGATTTCTGTGAATTTATGTAGATTTGTGTGCATTTGTGTGGATTTCTGTTGATCGTGAATGGAAAATATCGGTTGATTTGTGTGCAATGTGAATGGAAAATTCTGACTGTTTTTATTGTAAATTGTTGATGTAAATTTATGTGAATTTGTGAAAA]




>consensus_8472#1
ATNTTGCCGATGGGAGGAGGCCNCCGCTGGGGAGGACGGGCGCGGGGAGGACGGATCCGC
CCCGGCGGCGGCTCGAGGAGCACGGATCCGCCCCGGCGGTGGCGCGGGGAGCACGACCGC
GGGGCCTCGACCTCGTCACGACCGACGCCGTCGGGCCGCGGGCGGTGGTGCTCGGATTTC
TGTGAATTTATGTAGATTTGTGTGCATTTGTGTGGATTTCTGTTGATCGTGAATGGAAAA
TATCGGTTGATTTGTGTGCAATGTGAATGGAAAATTCTGACTGTTTTTATTGTAAATTGT
TGATGTAAATTTATGTGAATTTGTGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8472#0      CGACGGCAACTGGCGACGGTGACGACGGTGAGCACGACGGAAGCGGCGACGACGGCGACC 60
consensus_8472#1      ------------------------------------------------------------
                                                                                  

consensus_8472#0      ATGAAGGAAGCTGCGACGACGGCAACCACGAAGGAAGCGGTGACGACGGCGACCACGACC 120
consensus_8472#1      ------------------------------------------------------------
                                                                                  

consensus_8472#0      ATCCTGTGCGTGCTGTCCTTCACTGACTCGCTATCGTACCTCGGGTTCCATGTCAGGAGC 180
consensus_8472#1      ------------------------------------------------------------
                                                                                  

consensus_8472#0      GTCGACAAGAGGCAGATCAGCCGTAACTACCTCTACTGGGGCGCCGCGCCCTCCCATCCC 240
consensus_8472#1      ------------------------------------------------------------
                                                                                  

consensus_8472#0      ATCCTCTCCCCTCTCCCAGATTTGTCTGTGGGGAGGAGGATGGGCAATGGGAGGACGGAT 300
consensus_8472#1      ---ATNTTGCCGATGGGAGGAG-GCCNCCGCTGGGGAGGACGGGCGCGGGGAGGACGGAT 56
                          * *  **  *   **    * *   *  * ****** ****   ************

consensus_8472#0      CCGCCCCGGCGGTGGCGCGGGTAGCACGGCCGCGG---GGCCTCGGGAGGTGGAGCGCGA 357
consensus_8472#1      CCGCCCCGGCGGCGGCTCGAGGAGCACGGATCCGCCCCGGCGGTGGCGCGGGGAGCACGA 116
                      ************ *** ** * *******   **    ***   **   * ***** ***

consensus_8472#0      CCGTCGG-CCTTGACCTCGTCACGACCGACGCCGCCGGGCCGTGGGCGGTGGTGCTCAGA 416
consensus_8472#1      CCGCGGGGCCTCGACCTCGTCACGACCGACGCCGTCGGGCCGCGGGCGGTGGTGCTCGGA 176
                      ***  ** *** ********************** ******* ************** **

consensus_8472#0      TTTCAATGGATTTCTGTGGATTTGTGTGCATTTGTGTAGATTTATGTGGCTTGTGAATGG 476
consensus_8472#1      TTTCTGTGAATTTATGTAGATTTGTGTGCATTTGTGTGGATTTCTGTTGATCGTGAATGG 236
                      ****  ** **** *** ******************* ***** *** * * ********

consensus_8472#0      AAAATATGTGTTGATTTGTGTGGATTTGTTTTGATTGTGAATGGAAAATTTTGACTGTTT 536
consensus_8472#1      AAAATATCGGTTGATTTGTGTGCAAT----------GTGAATGGAAAATTCTGACTGTTT 286
                      *******  ************* * *          ************** *********

consensus_8472#0      TTATTGTAAATTGTTGGTGTAAATTTATGTGAATTTGTGAATCAAGGAGTGGATTTAGGA 596
consensus_8472#1      TTATTGTAAATTGTTGATGTAAATTTATGTGAATTTGTGAAAA----------------- 329
                      **************** ************************                   

consensus_8472#0      ATAATTTGAATTGGTGTTGACAAAGGTGAATGGACCGGTGTTGCNCCGTTATTTTTTTTT 656
consensus_8472#1      ------------------------------------------------------------
                                                                                  

consensus_8472#0      TTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAA 690
consensus_8472#1      ----------------------------------