These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2220 fasta sequence [GGCAAAGTCTTCCAATATACAAGTTGAAGAAAGAGCTGATACAAGCTGTGCATGATAACCAAGTCTTGGTTGTTATTGGAGAGACTGGTTCTGGTAAAACAACACAGGTGACACAATATTTGGCCGAAGCAGGCTACACGACCAGAGGTAAGATTGGTTGCACTCAACCTCGTCGTGTGGCTGCAATGTCTGTTGCTAAGAGAGTAGCAGAAGAATTTGGTTGTCGACTTGGAGAGGAAGTTGGTTATGCCATCCGCTTTGAGGATTGCACTGGGCCTGACACGGTAATCAAATACATGACTGATGGCATGCTTTTGCGTGAGATTCTTGTCGATGAGAACCTTTCCCAGTATTCTGTAATTATGCTTGATGAAGCGCATGAAAGGACCATACACACAGATGTTCTCTTTGGCTTGCTGAAACAGCTTATTAAGCGCAGATCTGACATGAGGCTTATTGTTACTTCTGCTACCCTGGACGCAGAGAAGTTCTCAGGGTATTTTTTCAATTGCAACATCTTCACAATTCCTGGAAGGACGTTCCCGGTAGAGATACTCTACACCAAACAACCAGAAAGTGACTATTTGGATGCAGCATTGATCACCGTGCTTCAAATACACTTGACTGAGCCAGAAGGTGATATCCTCCTTTTTTTGACTGGTCAAGAGGAGATTGATCATGCTTGTCAATGTCTTTATGAGAGGATGAAAGGGCTAGGGAAGGATGTTCCTGAGCTCATAATATTGCCTGTTTATAGTGCTCTTCCGAGTGAAATGCAGTCGAAGATCTTTGACCCAGCTCCTCCA-GGGAAGAGGAAGGTTGTTGTGGCCACCAATATCGCTGAAGCTTCTCTAACCATTGACGGCATATATTATGTCGTCGATCCTGGTTTTGCCAAAATTAATGTTTATAATTCAAAACAAGGACTCGATTCATTGGTCATCACTCCAATCTCTCAAGCATCAGCGAAGCAGAGGGCAGGGCGTGCTGGGCGTACTGGCCCTGGCAAATGCTATCGTCTATACACTGAAAGTGCATACCGCAATGAAATGTCTCCCACAACAATCCCAGAAATTCAAAGGATTAACTTGGGGTCTACAGTTCTCAACATGAAGGCGATGGGAATCAATGACCTATTATCCTTTGATTTCATGGACCCTCCTGCACCTCAAGCACTTATATCTGCAATGGAGCAATTGTACAGCCTAGGTGCTCTTGATGAAGAAGGGCTCCTTACCAAACTGGGGAGGAAAATGGCTGAATTTCCACTGGATCCACCACTTTCGAAGATGCTTCTAGCCAGCGTTGACCTTGGATGCAGTGATGAGATACTAACTATTATAGCTATGATACAAACTGGGAACATTTTCTATAGGCCAAGAGAAAAACAGGCTCAGGCTGATCAAAAGAGGGCCAAG-TTTTTCCAGCCAGAGGGGGATCATCTAACTCTGCTTGCTGTATATGAGGCGTGGAAGGCAAAAAACTTTTCAGGGCCCTGGTGTTTTGAGAACTTTGTTCAATCAAGATCCTTAAGGAGAGCTCAAGATGTGAGGAAGCAGCTTCTCACTATCATGGACAGATATAAATTGGATGTTGTCTCAGCTGGGAGGAACTTCACAAAAATAAGGAAAGCAATCACTGCCGGCTTCTTTTTCCACGCTGCCAGGAAGGATCCCCAGGAGGGATACAGAACCTTGGTAGAGAACCAGCCGGTGTACATACACCCGAGCAGCGCATTGTTCCAGCGGCAGCCAGACTGGGTCATCTACCACGAACTTGTAATGACGACGAAGGAGTACATGCGGGAGGTTACCGTGATCGACCCGAAGTGGCTTACTGAGCTAGCCCCGAGATTCTACAAGTCAGCAGACCCAACCAAGATGAGCAAGAGGAAGAGGCAGGAGAGGATTGAACCCCTGTACGACAGGTACCATGAGCCCAACTCCTGGCGTCTCAGCAAGCGCCGAGCTTGATGGCTCTCACCTGTACAATGTTCTGCATGTTCTGCGGCGCTGGTTCGATCAAATTCCAAACTGGAAATTTTGGTGTAGCTGTAAATATTAATGTGACTGTTGTCTCAGCTGTGTTTCTTACATGACTGTTGTTAGCTGAGCAGGTATTGACACATGTAATGTAGCCGGACTCTGTCCTTTGTTGAGACAGTTCCCATGAATTTTTCCGTTTGCCTAAATGCCAACGTTCATCATTAAGTGATGCAAT] [+] EMBL CB653306 [GGCAAAGTCTTCCAATATACAAGTTGAAGAAAGAGCTGATACAAGCTGTGCATGATAACCAAGTCTTGGTTGTTATTGGAGAGACTGGTTCTGGTAAAACAACACAGGTGACACAATATTTGGCCGAAGCAGGCTACACGACCAGAGGTAAGATTGGTTGCACTCAACCTCGTCGTGTGGCTGCAATGTCTGTTGCTAAGAGAGTAGCAGAAGAATTTGGTTGTCGACTTGGAGAGGAAGTTGGTTATGCCATCCGCTTTGAGGATTGCACTGGGCCTGACACGGTAATCAAATACATGACTGATGGCATGCTTTTGCGTGAGATTCTTGTCGATGAGAACCTTTCCCAGTATTCTGTAATTATGCTTGATGAAGCGCATGAAAGGACCATACACACAGATGTTCTCTTTGGCTTGCTGAAACAGCTTATTAAGCGCAGATCTGACATGAGGCTTATTGTTACTTCTGCTACCCTGGACGCAGAGAAGTTCTCAGGGTATTTTTTCAATTGCAACATCTTCACAATTCCTGGAAGGACGTTCCCGGTAGAGATACTCTACACCAAACAACCAGAAAGTGACTATTTGGATGCAGCATTGATCACCGTGCTTCAAATACACTTGACTGAGCCAGAAGGTGATATCCTCCTTTTTTTGACTGGTCAAGAGGAGATTGATCATGCTTGTCAATGTCTTTATGAGAGGATGAAAGGGCTANGGAAGGATGTTCCTGAGCTCATAATATTGCCTGTTTATAGTGCTCTTCCGAGTGAAATGCAGTC ] [+] EMBL AK059339 [ CCTTTCCCAGTATTCTGTAATTATGCTTGATGAAGCGCATGAAAGGACCATACACACAGATGTTCTCTTTGGCTTGCTGAAACAGCTTATTAAGCGCAGATCTGACATGAGGCTTATTGTTACTTCTGCTACCCTGGACGCAGAGAAGTTCTCAGGGTATTTTTTCAATTGCAACATCTTCACAATTCCTGGAAGGACGTTCCCGGTAGAGATACTCTACACCAAACAACCAGAAAGTGACTATTTGGATGCAGCATTGATCACCGTGCTTCAAATACACTTGACTGAGCCAGAAGGTGATATCCTCCTTTTTTTGACTGGTCAAGAGGAGATTGATCATGCTTGTCAATGTCTTTATGAGAGGATGAAAGGGCTAGGGAAGGATGTTCCTGAGCTCATAATATTGCCTGTTTATAGTGCTCTTCCGAGTGAAATGCAGTCGAAGATCTTTGACCCAGCTCCTCCA GGGAAGAGGAAGGTTGTTGTGGCCACCAATATCGCTGAAGCTTCTCTAACCATTGACGGCATATATTATGTCGTCGATCCTGGTTTTGCCAAAATTAATGTTTATAATTCAAAACAAGGACTCGATTCATTGGTCATCACTCCAATCTCTCAAGCATCAGCGAAGCAGAGGGCAGGGCGTGCTGGGCGTACTGGCCCTGGCAAATGCTATCGTCTATACACTGAAAGTGCATACCGCAATGAAATGTCTCCCACAACAATCCCAGAAA CAAAGGATTAACTTGGGGTCTACAGTTCTCAACATGAAGGCGATGGGAATCAATGACCTATTATCCTTTGATTTCATGGACCCTCCTGCACCTCAAGCACTTATATCTGCAATGGAGCAATTGTACAGCCTAGGTGCTCTTGATGAAGAAGGGCTCCTTACCAAACTGGGGAGGAAAATGGCTGAATTTCCACTGGATCCACCACTTTCGAAGATGCTTCTAGCCAGCGTTGACCTTGGATGCAGTGATGAGATACTAACTATTATAGCTATGATACAAACTGGGAACATTTTCTATAGGCCAAGAGAAAAACAGGCTCAGGCTGATCAAAAGAGGGCCAAG TTTTTCCAGCCAGAGGGGGATCATCTAACTCTGCTTGCTGTATATGAGGCGTGGAAGGCAAAAAACTTTTCAGGGCCCTGGTGTTTTGAGAACTTTGTTCAATCAAGATCCTTAAGGAGAGCTCAAGATGTGAGGAAGCAGCTTCTCACTATCATGGACAGATATAAATTGGATGTTGTCTCAGCTGGGAGGAACTTCACAAAAATAAGGAAAGCAATCACTGCCGGCTTCTTTTTCCACGCTGCCAGGAAGGATCCCCAGGAGGGATACAGAACCTTGGTAGAGAACCAGCCGGTGTACATACACCCGAGCAGCGCATTGTTCCAGCGGCAGCCAGACTGGGTCATCTACCACGAACTTGTAATGACGACGAAGGAGTACATGCGGGAGGTTACCGTGATCGACCCGAAGTGGCTTACTGAGCTAGCCCCGAGATTCTACAAGTCAGCAGACCCAACCAAGATGAGCAAGAGGAAGAGGCAGGAGAGGATTGAACCCCTGTACGACAGGTACCATGAGCCCAACTCCTGGCGTCTCAGCAAGCGCCGAGCTTGATGGCTCTCACCTGTACAATGTTCTGCATGTTCTGCGGCGCTGGTTCGATCAAATTCCAAACTGGAAATTTTGGTGTAGCTGTAAATATTAATGTGACTGTTGTCTCAGCTGTGTTTCTTACATGACTGTTGTTAGCTGAGCAGGTATTGACACATGTAATGTAGCCGGACTCTGTCCTTTGTTGAGACAGTTCCCATGAATTTTTCCGTTTGCCTAAATGCCAACGTTCATCATTAAGTGATGCAAT] [+] EMBL CA753660 [ CTGTAATTATGCTTGATGAAGCGCATGAAAGGACCATACACACAGATGTTCTCTTTGGCTTGCTGAAACAGCTTATTAAGCGCAGATCTGACATGAGGCTTATTGTTACTTCTGCTACCCTGGACGCAGAGAAGTTCTCAGGGTATTTTTTCAATTGCAACATCTTCACAATTCCTGGAAGGACGTTCCCGGTAGAGATACTCTACACCAAACAACCAGAAAGTGACTATTTGGATGCAGCATNGATCACCGTGCTTCAAATACACTTGACTGAGCCAGAAGGTGATATCCTCCTTTTTTTGACTGGTCAAGAGGAGATNGATAATGCTTGTCAATGTCTTTATGAGAGGATGAAAGGGCTAGGGAAGGATGTTCCTGAGCTCATAATATTGCCTGTNTATAGTGCTCTTCCGAGTGAAATGCAGTCGAAAATCTTTGACCCAGCTCCTCCAGGGGAAGAGGAAGGTTGTTGTGGCCACCAATATCGCTGAAGCTTCTCTAACCATTGACGGCATATATTATGTCGTCGATCCTGGTTTNGCCAAAATTAATGTTTATAATTCAAAACAAGGACTCGATTCATTGGTCATCACTCCAATCTCTCAAGCATCAGCGAAGCAGAGGGCAGGGCGTGCTGGGCGTACTGGCCCTGGCAAATGCTATCGTCTATACACTGAAAGTGCATACCGCAATGAAATGTCTCCCACAACAATCCCAGAAATTCAAAGGATTAACTTGGGGTCTACAGTTCTCAACATGAAGGCGATGGGAATCAATGACCTATTATCCTTTGATTTCA ] [+] EMBL CB680690 [ ctcatcccTTGCCTGTTTATAGTGCTCTTCCGAGTGAAATGCAGTCGAAGATCTTTGACCCAGCTCCTCCA GGGAAGAGGAAGGTTGTTGTGGCCACCAATATCGCTGAAGCTTCTCTAACCATTGACGGCATATATTATGTCGTCCATCCTGGTTTTGCCAAAATTAATGTTTATAATTCAAAACAAGGACTCGATTCATTGGTCATCACTCCAATCTCTCAAGCATCAGCGAAGCAGAGGGCAGGGCGTGCTGGGCGTACTGGCCCTGGCAAATGCTATCGTCTATACACTGAAAGTGCATACCGCAATGAAATGTCTCCCACAACAATCCCAGAAATTCAAAGGATTAACTTGGGGTCTACAGTTCTCAACATGAAGGCGATGGGAATCAATGACCTATTATCCTTTGATTTCATGGACCCTCCTGCACCTCAAGCACTTATATCTGCAATGGAGCAATTGTACAGCCTACGTGCTCTTGATGAAGAAGGGCTCCTTACCAAACTGGGGAGGAAAATGGCTGAATTTCCACTGGATCCACCACTTTCGAAGATGCTTCTAGCCAGCGTTGACCTTGGATGCAGTGATGAGATACTAACTATTATAGCTATGATACAAACTGGGAACATTTTCTATAGGCCAAGAGAAAAACAGGCTCACGCTGATCAAAAGAGGGCCAAGTTTTTTCCA CCAGAGGGAGATCATCTAACT ] consensusID : consensus_8475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [TACCACGAACTTGTAATGGACGACCGAAGGAGTACATCGGGAGGTTACCGTGATCGACCCGAAGTGGCTTACTGAGCTAGCCCCGAGATTCTACAAGTCAGCAAGACCCATACCATAGATGAGCAAGAGGAAGAGGCAGGAGAGGATTGAACCCCTGTACGACAGGTACCATGAGCCCAACTCCTGGCGTCTCAGCAAGCGCCGAGCTTGATGTTCTGCATGTTCTGCGGCGCTGGTTCGATCAAATTCCACAACTGGAAATTTTGGTGTACTGTAAATATTAATGTGACTGTTGTCTCAGCTGGTGTTTCTTACATATGACTGTTGTTAGCTGAGCAGGTATTGACACATGTAATGTAGCTGGACTCTGTCCTTTGTTGAGACAG] [+] EMBL BI809386 [TACCACGAACTTGTAATGGACGACCGAAGGAGTACATCGGGAGGTTACCGTGATCGACCCGAAGTGGCTTACTGAGCTAGCCCCGAGATTCTACAAGTCAGCAAGACCCATACCATAGATGAGCAAGAGGAAGAGGCAGGAGAGGATTGAACCCCTGTACGACAGGTACCATGAGCCCAACTCCTGGCGTCTCAGCAAGCGCCGAGCTTGATGTTCTGCATGTTCTGCGGCGCTGGTTCGATCAAATTCCACAACTGGAAATTTTGGTGTACTGTAAATATTAATGTGACTGTTGTCTCAGCTGGTGTTTCTTACATATGACTGTTGTTAGCTGAGCAGGTATTGACACATGTAATGTAGCTGGACTCTGTCCTTTGTTGAGACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8475#0 GGCAAAGTCTTCCAATATACAAGTTGAAGAAAGAGCTGATACAAGCTGTGCATGATAACC 60 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 AAGTCTTGGTTGTTATTGGAGAGACTGGTTCTGGTAAAACAACACAGGTGACACAATATT 120 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 TGGCCGAAGCAGGCTACACGACCAGAGGTAAGATTGGTTGCACTCAACCTCGTCGTGTGG 180 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 CTGCAATGTCTGTTGCTAAGAGAGTAGCAGAAGAATTTGGTTGTCGACTTGGAGAGGAAG 240 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 TTGGTTATGCCATCCGCTTTGAGGATTGCACTGGGCCTGACACGGTAATCAAATACATGA 300 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 CTGATGGCATGCTTTTGCGTGAGATTCTTGTCGATGAGAACCTTTCCCAGTATTCTGTAA 360 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 TTATGCTTGATGAAGCGCATGAAAGGACCATACACACAGATGTTCTCTTTGGCTTGCTGA 420 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 AACAGCTTATTAAGCGCAGATCTGACATGAGGCTTATTGTTACTTCTGCTACCCTGGACG 480 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 CAGAGAAGTTCTCAGGGTATTTTTTCAATTGCAACATCTTCACAATTCCTGGAAGGACGT 540 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 TCCCGGTAGAGATACTCTACACCAAACAACCAGAAAGTGACTATTTGGATGCAGCATTGA 600 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 TCACCGTGCTTCAAATACACTTGACTGAGCCAGAAGGTGATATCCTCCTTTTTTTGACTG 660 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 GTCAAGAGGAGATTGATCATGCTTGTCAATGTCTTTATGAGAGGATGAAAGGGCTAGGGA 720 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 AGGATGTTCCTGAGCTCATAATATTGCCTGTTTATAGTGCTCTTCCGAGTGAAATGCAGT 780 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 CGAAGATCTTTGACCCAGCTCCTCCAGGGAAGAGGAAGGTTGTTGTGGCCACCAATATCG 840 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 CTGAAGCTTCTCTAACCATTGACGGCATATATTATGTCGTCGATCCTGGTTTTGCCAAAA 900 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 TTAATGTTTATAATTCAAAACAAGGACTCGATTCATTGGTCATCACTCCAATCTCTCAAG 960 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 CATCAGCGAAGCAGAGGGCAGGGCGTGCTGGGCGTACTGGCCCTGGCAAATGCTATCGTC 1020 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 TATACACTGAAAGTGCATACCGCAATGAAATGTCTCCCACAACAATCCCAGAAATTCAAA 1080 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 GGATTAACTTGGGGTCTACAGTTCTCAACATGAAGGCGATGGGAATCAATGACCTATTAT 1140 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 CCTTTGATTTCATGGACCCTCCTGCACCTCAAGCACTTATATCTGCAATGGAGCAATTGT 1200 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 ACAGCCTAGGTGCTCTTGATGAAGAAGGGCTCCTTACCAAACTGGGGAGGAAAATGGCTG 1260 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 AATTTCCACTGGATCCACCACTTTCGAAGATGCTTCTAGCCAGCGTTGACCTTGGATGCA 1320 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 GTGATGAGATACTAACTATTATAGCTATGATACAAACTGGGAACATTTTCTATAGGCCAA 1380 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 GAGAAAAACAGGCTCAGGCTGATCAAAAGAGGGCCAAGTTTTTCCAGCCAGAGGGGGATC 1440 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 ATCTAACTCTGCTTGCTGTATATGAGGCGTGGAAGGCAAAAAACTTTTCAGGGCCCTGGT 1500 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 GTTTTGAGAACTTTGTTCAATCAAGATCCTTAAGGAGAGCTCAAGATGTGAGGAAGCAGC 1560 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 TTCTCACTATCATGGACAGATATAAATTGGATGTTGTCTCAGCTGGGAGGAACTTCACAA 1620 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 AAATAAGGAAAGCAATCACTGCCGGCTTCTTTTTCCACGCTGCCAGGAAGGATCCCCAGG 1680 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 AGGGATACAGAACCTTGGTAGAGAACCAGCCGGTGTACATACACCCGAGCAGCGCATTGT 1740 consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 TCCAGCGGCAGCCAGACTGGGTCATCTACCACGAACTTGTAATG-ACGAC-GAAGGAGTA 1798 consensus_8475#1 --------------------------TACCACGAACTTGTAATGGACGACCGAAGGAGTA 34 ****************** ***** ********* consensus_8475#0 CATGCGGGAGGTTACCGTGATCGACCCGAAGTGGCTTACTGAGCTAGCCCCGAGATTCTA 1858 consensus_8475#1 CAT-CGGGAGGTTACCGTGATCGACCCGAAGTGGCTTACTGAGCTAGCCCCGAGATTCTA 93 *** ******************************************************** consensus_8475#0 CAAGTCAGCA-GACCCA-ACCA-AGATGAGCAAGAGGAAGAGGCAGGAGAGGATTGAACC 1915 consensus_8475#1 CAAGTCAGCAAGACCCATACCATAGATGAGCAAGAGGAAGAGGCAGGAGAGGATTGAACC 153 ********** ****** **** ************************************* consensus_8475#0 CCTGTACGACAGGTACCATGAGCCCAACTCCTGGCGTCTCAGCAAGCGCCGAGCTTGATG 1975 consensus_8475#1 CCTGTACGACAGGTACCATGAGCCCAACTCCTGGCGTCTCAGCAAGCGCCGAGCTTGATG 213 ************************************************************ consensus_8475#0 GCTCTCACCTGTACAATGTTCTGCATGTTCTGCGGCGCTGGTTCGATCAAATTCCA-AAC 2034 consensus_8475#1 ------------------TTCTGCATGTTCTGCGGCGCTGGTTCGATCAAATTCCACAAC 255 ************************************** *** consensus_8475#0 TGGAAATTTTGGTGTAGCTGTAAATATTAATGTGACTGTTGTCTCAGCTG-TGTTTCTTA 2093 consensus_8475#1 TGGAAATTTTGGTGTA-CTGTAAATATTAATGTGACTGTTGTCTCAGCTGGTGTTTCTTA 314 **************** ********************************* ********* consensus_8475#0 CAT--GACTGTTGTTAGCTGAGCAGGTATTGACACATGTAATGTAGCCGGACTCTGTCCT 2151 consensus_8475#1 CATATGACTGTTGTTAGCTGAGCAGGTATTGACACATGTAATGTAGCTGGACTCTGTCCT 374 *** ****************************************** ************ consensus_8475#0 TTGTTGAGACAGTTCCCATGAATTTTTCCGTTTGCCTAAATGCCAACGTTCATCATTAAG 2211 consensus_8475#1 TTGTTGAGACAG------------------------------------------------ 386 ************ consensus_8475#0 TGATGCAAT 2220 consensus_8475#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||