cluster # 848

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Oryza sativa
cluster # 848 cluster # 848 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_848#0 length = 344 sequences # 1

consensus_848#1 length = 242 sequences # 1

consensusID : consensus_848#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [CGGAGCTCCGGTTNNAGCTCGTCGACGACGAGACCTCGCCGGAGACCCCCGTCCGCTCCGAGGCCGCCAAGCGCGCCAGGGACAACATCGCCCACAACCTCCTCCACCGCGGCTTCGCCGGAACCACCTTCTTCTGACCATCGATCGATCGATCACACCACCGCCGCTTCTTGGTACAAAATCCCCCGACAAAGTAGCGATTCTTTTAGCCCCGCTAGAATAGAAAGATTTTGCTAGTTCTTTTTTTTGGGTCAGCAGTGCAATGCGATGGAGTGTAAAACATAATTTGGGCAGCTGTTTGTTTTCAAATTCAAGATATATACAGTTCAATTTACAACTAAAAA]

[+] EMBL AU172482             [CGGAGCTCCGGTTNNAGCTCGTCGACGACGAGACCTCGCCGGAGACCCCCGTCCGCTCCGAGGCCGCCAAGCGCGCCAGGGACAACATCGCCCACAACCTCCTCCACCGCGGCTTCGCCGGAACCACCTTCTTCTGACCATCGATCGATCGATCACACCACCGCCGCTTCTTGGTACAAAATCCCCCGACAAAGTAGCGATTCTTTTAGCCCCGCTAGAATAGAAAGATTTTGCTAGTTCTTTTTTTTGGGTCAGCAGTGCAATGCGATGGAGTGTAAAACATAATTTGGGCAGCTGTTTGTTTTCAAATTCAAGATATATACAGTTCAATTTACAACTAAAAA]




>consensus_848#0
CGGAGCTCCGGTTNNAGCTCGTCGACGACGAGACCTCGCCGGAGACCCCCGTCCGCTCCG
AGGCCGCCAAGCGCGCCAGGGACAACATCGCCCACAACCTCCTCCACCGCGGCTTCGCCG
GAACCACCTTCTTCTGACCATCGATCGATCGATCACACCACCGCCGCTTCTTGGTACAAA
ATCCCCCGACAAAGTAGCGATTCTTTTAGCCCCGCTAGAATAGAAAGATTTTGCTAGTTC
TTTTTTTTGGGTCAGCAGTGCAATGCGATGGAGTGTAAAACATAATTTGGGCAGCTGTTT
GTTTTCAAATTCAAGATATATACAGTTCAATTTACAACTAAAAA

consensusID : consensus_848#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [CAGGCCTTNGGCACGAGGATCGATCGATCCCACCACCGCCGCTTCTTGGTACAAAATCCCCCGACAAAGTAGCGATTCTTTTACCCCCGCTAGAATAGAAAGATTTTGCTAGTTCTTTTTTTNGGGTCAGCAGTGCAATGCGATGGANTGTAAAACATAATTTGGGCAGCTGTTTGTTTTCAAATTCAANATATATACAGTTCAATTTACAACTAGGATACAGATTCCCGGAAAAAAAAAAA]

[+] EMBL AA751680             [CAGGCCTTNGGCACGAGGATCGATCGATCCCACCACCGCCGCTTCTTGGTACAAAATCCCCCGACAAAGTAGCGATTCTTTTACCCCCGCTAGAATAGAAAGATTTTGCTAGTTCTTTTTTTNGGGTCAGCAGTGCAATGCGATGGANTGTAAAACATAATTTGGGCAGCTGTTTGTTTTCAAATTCAANATATATACAGTTCAATTTACAACTAGGATACAGATTCCCGGAAAAAAAAAAA]




>consensus_848#1
CAGGCCTTNGGCACGAGGATCGATCGATCCCACCACCGCCGCTTCTTGGTACAAAATCCC
CCGACAAAGTAGCGATTCTTTTACCCCCGCTAGAATAGAAAGATTTTGCTAGTTCTTTTT
TTNGGGTCAGCAGTGCAATGCGATGGANTGTAAAACATAATTTGGGCAGCTGTTTGTTTT
CAAATTCAANATATATACAGTTCAATTTACAACTAGGATACAGATTCCCGGAAAAAAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_848#0      CGGAGCTCCGGTTNNAGCTCGTCGACGACGAGACCTCGCCGGAGACCCCCGTCCGCTCCG 60
consensus_848#1      ------------------------------------------------------------
                                                                                 

consensus_848#0      AGGCCGCCAAGCGCGCCAGGGACAACATCGCCCACAACCTCCTCCACCGCGGCTTCGCCG 120
consensus_848#1      ------------------------------------------------------------
                                                                                 

consensus_848#0      GAACCACCTTCTTCTGACCATCGATCGATCGATCACACCACCGCCGCTTCTTGGTACAAA 180
consensus_848#1      ----CAGGC-CTTNGGCACGAGGATCGATCGATCCCACCACCGCCGCTTCTTGGTACAAA 55
                         **    ***  *  *   ************ *************************

consensus_848#0      ATCCCCCGACAAAGTAGCGATTCTTTTAGCCCCGCTAGAATAGAAAGATTTTGCTAGTTC 240
consensus_848#1      ATCCCCCGACAAAGTAGCGATTCTTTTACCCCCGCTAGAATAGAAAGATTTTGCTAGTTC 115
                     **************************** *******************************

consensus_848#0      TTTTTTTTGGGTCAGCAGTGCAATGCGATGGAGTGTAAAACATAATTTGGGCAGCTGTTT 300
consensus_848#1      TTTTTTTNGGGTCAGCAGTGCAATGCGATGGANTGTAAAACATAATTTGGGCAGCTGTTT 175
                     ******* ************************ ***************************

consensus_848#0      GTTTTCAAATTCAAGATATATACAGTTCAATTTACAACTAAAAA---------------- 344
consensus_848#1      GTTTTCAAATTCAANATATATACAGTTCAATTTACAACTAGGATACAGATTCCCGGAAAA 235
                     ************** *************************  *                 

consensus_848#0      -------
consensus_848#1      AAAAAAA 242