These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1564 fasta sequence [AAGCCGCGAAGGGCAAAGAAGATGATGACTAATACCAAGCTCTTCCCTCTCGTCGCTGCCATCTGCATTTCCTTCCTGTCCGTAGCGTGCGCGTCCAACTCCACCTCGTCGCACCCCAGCTCCAGTTCTAGCCTCCTCACCAAACCGCCGCAATGGCGGGAACACCTCCTCCTTGCCGACTCGTCCTCACACGTCGGCCTCGGCCTGAACACCGTCGCCGCATGGCTACTCTCCTTCCTGGCCGCGTCCGTGTCGAGCGCCGGCGGCGTGGGGGGCGGATCGCTGTTCCTCCCCATCCTGAACCTCGTGGCGGGGCTCAGCCTCAAGCGGGCCACCGCCTACTCGTCCTTCATGGTCACCGGCGGGGCCGCCTCCAACGTGCTCTACAACCTCCTCTGCACGGGCTGCGGGCGGCGCGCCGCGGCGGTGATCGACTACGACATCGCCCTGCTCTTCCAGCCGTGCCTGCTCCTGGGCGTCAGCATCGGGGTGGTGTGCAACGTCATGTTCCCGGAGTGGCTCATCACCGCGCTCTTCGCGCTGTTCCTCGCCTTCTGCACCACCAAGACGTTGCGTGCCGGGCTCAGGATATGGAGCTCGGAGAGCCGCGGCGCCACCCTCGCAGTCGCAGCCGCCACCGCGCACGGCCGCGAGGAGCCCCTGCTGCTGCCGCACGGCACCGATGCCGGCAATGGCGGTGGTGCCCGCGGCGACGCGGGGTTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAGGGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCACCCTGTCCCAGGTTCCTTTCGCCGTGGCTTTCACAGCTTATATTATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCGGAGAGCACTAAAATGGATACCTTGCCCACGCT-TCT-ATT-CCCACTGGCTGCTTTTGT-CACCGGTGCTCTGAGCGGC-CTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCA-C-CGCAGACTGCAGCAGCGACGTCTTCGTTTA-TGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTC-GGTTGTTGGAGCGGTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATGTGCACACAGTTACACAACAAAAAAAAAAAAAAACATCGAGTGAGAGGTGCTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAACCCCTGTCTTGCCG] [+] EMBL CB641511 [AAGCCGCGAAGGGCAAAGAAGATGATGACTAATACCAAGCTCTTCCCTCTCGTCGCTGCCATCTGCATTTCCTTCCTGTCCGTAGCGTGCGCGTCCAACTCCACCTCGTCGCACCCCAGCTCCAGTTCTAGCCTCCTCACCAAACCGCCGCAATGGCGGGAACACCTCCTCCTTGCCGACTCGTCCTCACACGTCGGCCTCGGCCTGAACACCGTCGCCGCATGGCTACTCTCCTTCCTGGCCGCGTCCGTGTCGAGCGCCGGCGGCGTGGGGGGCGGATCGCTGTTCCTCCCCATCCTGAACCTCGTGGCGGGGCTCAGCCTCAAGCGGGCCACCGCCTACTCGTCCTTCATGGTCACCGGCGGGGCCGCCTCCAACGTGCTCTACAACCTCCTCTGCACGGGCTGCGGGCGGCGCGCCGCGGCGGTGATCGACTACGACATCGCCCTGCTCTTCCAGCCGTGCCTGCTCCTGGGCGTCAGCATCGGGGTGGTGTGCAACGTCATGTTCCCGGAGTGGCTCATCACCGCGCTCTTCGCGCTGTTCCTCGCCTTCTGCACCACCAAGACGTTGCGTGCCGGGCTCAGGATATGGAGCTCGGAGAGCCGCGGCGCCACCCTCGCAGTCGCAGCCGCCACCGCGCACGGCCGCGAGGAGCCCCTGCTGCTGCCGCACGGCACCGATGCCGGCAATGGCGGTGGTGCCCGCGGCGACGCGGGGTTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTC ] [+] EMBL AK061235 [ CACCCCAGCTCCAGTTCTAGCCTCCTCACCAAACCGCCGCAATGGCGGGAACACCTCCTCCTTGCCGACTCGTCCTCACACGTCGGCCTCGGCCTGAACACCGTCGCCGCATGGCTACTCTCCTTCCTGGCCGCGTCCGTGTCGAGCGCCGGCGGCGTGGGGGGCGGATCGCTGTTCCTCCCCATCCTGAACCTCGTGGCGGGGCTCAGCCTCAAGCGGGCCACCGCCTACTCGTCCTTCATGGTCACCGGCGGGGCCGCCTCCAACGTGCTCTACAACCTCCTCTGCACGGGCTGCGGGCGGCGCGCCGCGGCGGTGATCGACTACGACATCGCCCTGCTCTTCCAGCCGTGCCTGCTCCTGGGCGTCAGCATCGGGGTGGTGTGCAACGTCATGTTCCCGGAGTGGCTCATCACCGCGCTCTTCGCGCTGTTCCTCGCCTTCTGCACCACCAAGACGTTGCGTGCCGGGCTCAGGATATGGAGCTCGGAGAGCCGCGGCGCCACCCTCGCAGTCGCAGCCGCCACCGCGCACGGCCGCGAGGAGCCCCTGCTGCTGCCGCACGGCACCGATGCCGGCAATGGCGGTGGTGCCCGCGGCGACGCGGGGTTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAGGGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCACCCTGTCCCAGGTTCCTTTCGCCGTGGCTTTCACAGCTTATATTATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCGGAGAGCACTAAAATGGATACCTTGCCCACGCT TCT ATT CCCACTGGCTGCTTTTGT CACCGGTGCTCTGAGCGGC CTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCA C CGCAGACTGCAGCAGCGACGTCTTCGTTTA TGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTC GGTTGTTGGAGCGGTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATGTGCACACA ] [+] EMBL BI800099 [ GCTGTCTGATTGCCCACTGGCTGCTTTTGTGCACCGGTGCTCTGAGCGGCACTCTTT GCATTGGGGGAGGCCTACTTCTGAA CCTGTTCTTCTTCAGATTGGAATACCATCACGCAGACTGCAGCAGCGACGTCTTCGTTTAGTGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCAGATTGTTGGAGC GTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATGTGCACACAGTTACACA ] [+] EMBL CF308464 [ CGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATGTGCACACAGTTACACAACAAAAAAAAAAAAAAACATCGAGTGAGAGGTGCTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAACCCCTGTCTTGCCG] consensusID : consensus_8506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [ATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCGGAGAGCACTAAAATGGATACCTTGCCCACGCTTCTATTCCCACTGGCTGCTTTTGTCACCGGTGCTATGAGCGGCCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGGTACAGTGGTACACACACTACAGATTCTTAAGCTACTGAAACTATGGTCCTATGGCCCTATGGTTACCAAGGTATGATCAGTAGTTTTCTGTCGAGTCCATGATTCATGCAGTAGCATTACCATCCTTGATTTGCAGACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCGGTTGTTGGAGCGGTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTCCCTTGCTGACATTGTCAGGAAGCTAAATATGTGCACACAGTTACTCATCAAAAAAAAGG] [-] EMBL CB641512 [ATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCGGAGAGCACTAAAATGGATACCTTGCCCACGCTTCTATTCCCACTGGCTGCTTTTGTCACCGGTGCTATGAGCGGCCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGGTACAGTGGTACACACACTACAGATTCTTAAGCTACTGAAACTATGGTCCTATGGCCCTATGGTTACCAAGGTATGATCAGTAGTTTTCTGTCGAGTCCATGATTCATGCAGTAGCATTACCATCCTTGATTTGCAGACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCGGTTGTTGGAGCGGTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTCCCTTGCTGACATTGTCAGGAAGCTAAATATGTGCACACAGTTACTCATCAAAAAAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8506#0 AAGCCGCGAAGGGCAAAGAAGATGATGACTAATACCAAGCTCTTCCCTCTCGTCGCTGCC 60 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 ATCTGCATTTCCTTCCTGTCCGTAGCGTGCGCGTCCAACTCCACCTCGTCGCACCCCAGC 120 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 TCCAGTTCTAGCCTCCTCACCAAACCGCCGCAATGGCGGGAACACCTCCTCCTTGCCGAC 180 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 TCGTCCTCACACGTCGGCCTCGGCCTGAACACCGTCGCCGCATGGCTACTCTCCTTCCTG 240 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 GCCGCGTCCGTGTCGAGCGCCGGCGGCGTGGGGGGCGGATCGCTGTTCCTCCCCATCCTG 300 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 AACCTCGTGGCGGGGCTCAGCCTCAAGCGGGCCACCGCCTACTCGTCCTTCATGGTCACC 360 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 GGCGGGGCCGCCTCCAACGTGCTCTACAACCTCCTCTGCACGGGCTGCGGGCGGCGCGCC 420 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 GCGGCGGTGATCGACTACGACATCGCCCTGCTCTTCCAGCCGTGCCTGCTCCTGGGCGTC 480 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 AGCATCGGGGTGGTGTGCAACGTCATGTTCCCGGAGTGGCTCATCACCGCGCTCTTCGCG 540 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 CTGTTCCTCGCCTTCTGCACCACCAAGACGTTGCGTGCCGGGCTCAGGATATGGAGCTCG 600 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 GAGAGCCGCGGCGCCACCCTCGCAGTCGCAGCCGCCACCGCGCACGGCCGCGAGGAGCCC 660 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 CTGCTGCTGCCGCACGGCACCGATGCCGGCAATGGCGGTGGTGCCCGCGGCGACGCGGGG 720 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 TTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTCCAT 780 consensus_8506#1 -----------------------------------ATATACGCGAAGAGGAAGAAACAAG 25 * * * * consensus_8506#0 GTCTTCATTGGCGATAAGCATGGAAAGGGTATGATCAGGATAAAACCCTGTGGAGTTGCA 840 consensus_8506#1 TTCTGCATAATCAAGAAG-ATGGCAAGGCAA--ATCCGGAGAGCACTAAAATGGATACCT 82 *** *** * * *** **** **** * *** *** * ** * * * consensus_8506#0 TACTGGTTGATCACCCTGTCCCAGGTTCCTTT--CGCCGTGGCTTTCA-CAGCTTATATT 897 consensus_8506#1 TGCCCACGCTTCTATTCCCACTGGCTGCTTTTGTCACCGGTGCTATGAGCGGCCTCTTTG 142 * * ** * * * * *** * *** *** * * * ** * * * consensus_8506#0 ATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCG 957 consensus_8506#1 GCATTGGGGGAGGCCTACTTCTGAACCCTGTTC--TTCTTCAGATTGGAATACCA--CCG 198 ** * * ** * * *** * **** * ** * * *** consensus_8506#0 GAGAGCACTAAAATGGATACCTTGCCCACGCTTCTATTCCCACTGGCTGCTTTTGTCACC 1017 consensus_8506#1 CAG-GTACAGTGGTACACACACTACA---GATTCTTAAGCTACTGAA-ACTATGGTC-CT 252 ** * ** * * ** * * * **** * **** ** * *** * consensus_8506#0 GGTGCTCTGAGCGGCCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTT 1077 consensus_8506#1 ATGGCCCTA--TGGTTACCAAGGTATGATCAGTAGTTTTCTGTCGAGTCC-ATGATTCAT 309 ** ** ** * ** ** * * * ** ** ** * *** * consensus_8506#0 CAGATTGGAATACCACC--------GCAGACTGCAGCAGCGACGTCTTCGTTTATGGTCC 1129 consensus_8506#1 GCAGTAGCATTACCATCCTTGATTTGCAGACTGCAGCAGCGACGTCTTCGTTTATGGTCC 369 * * * ***** * *********************************** consensus_8506#0 TTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAG 1189 consensus_8506#1 TTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAG 429 ************************************************************ consensus_8506#0 AAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCGGTTGTTGGAGCGGTGGTGATTG 1249 consensus_8506#1 AAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCGGTTGTTGGAGCGGTGGTGATTG 489 ************************************************************ consensus_8506#0 AGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCA 1309 consensus_8506#1 AGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCA 549 ************************************************************ consensus_8506#0 TGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATA 1369 consensus_8506#1 TGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATA 609 ************************************************************ consensus_8506#0 CTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATG 1429 consensus_8506#1 CTAGTGGAGCTTACATGGGTTTCAAGTTCCCTTGCTGACATTGTCAGGAAGCTAAATATG 669 **************************** ****************** ************ consensus_8506#0 TGCACACAGTTACACAACAAAAAAAAAAAAAAACATCGAGTGAGAGGTGCTTGCTAAAAA 1489 consensus_8506#1 TGCACACAGTTACTCATCAAAAAAAAGG-------------------------------- 697 ************* ** ********* consensus_8506#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAA 1549 consensus_8506#1 ------------------------------------------------------------ consensus_8506#0 ACCCCTGTCTTGCCG 1564 consensus_8506#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||