These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 809 fasta sequence [GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTACAAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTCGTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC-ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAA-TGACCCTGAACTTAGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTG-CAGCAGATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGGATGACACACTTTGTTTATGATGCAAAAAA] [+] EMBL CA999482 [GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTACAAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTCGTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAA T ] [-] EMBL BI306384 [ CGCTCTCCCTCCAGTCC ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAA TGACCCTGAACTTAGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTG CAGCAGATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGGATGACAC ] [+] EMBL AU097064 [ aAGTCCNATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAATTGNCCCTGAACTTAGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTGNCAGCAGATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGGATGACACACTTTGTTTATGATGCAAAAAA] consensusID : consensus_8507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [GGANTCGCNAGCTTGCTTGGCCGGGACNTGACAGGGGGGAGCATAGCCTACATGAATGCCCCCTTGTTGAAGCTAAAGACAAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTNGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGNAATGTATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGANNATCATANTTAAATGTAACTAGTATACATTNACTCAATGTTCGGATTTANTGTGACATACCGNAGATNTGCTGNGGAATGTGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACNCTAGCCTTANCTAACTTAAGCTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCGCATAATGCATTCTTTTCCCGCACANAANTTCCANACACN] [+] EMBL CA764882 [GGANTCGCNAGCTTGCTTGGCCGGGACNTGACAGGGGGGAGCATAGCCTACATGAATGCCCCCTTGTTGAAGCTAAAGACAAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTNGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGNAATGTATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGANNATCATANTTAAATGTAACTAGTATACATTNACTCAATGTTCGGATTTANTGTGACATACCGNAGATNTGCTGNGGAATGTGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACNCTAGCCTTANCTAACTTAAGCTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCGCATAATGCATTCTTTTCCCGCACANAANTTCCANACACN] consensusID : consensus_8507#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [ACGAGACGAAACGGTAAAGAATCCGGCAGCAGCAAGCAGGAGAGCGCGACTCGNCGTCCCCGCTCCGCTCCACACGCATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACGGNCTGGAGCNATNGGGCGGCGCGGGGGCGCGGCGGTNGCGGCGGCGTNCGGGCGGTNGTGCCTNGTGATCCTNGCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCCGGCCTTCTANTTGCGCTACAAGAAGGGCTTCGCTNCTTCTTCTTCTTCTTC] [+] EMBL OSS1806A [ACGAGACGAAACGGTAAAGAATCCGGCAGCAGCAAGCAGGAGAGCGCGACTCGNCGTCCCCGCTCCGCTCCACACGCATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACGGNCTGGAGCNATNGGGCGGCGCGGGGGCGCGGCGGTNGCGGCGGCGTNCGGGCGGTNGTGCCTNGTGATCCTNGCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCCGGCCTTCTANTTGCGCTACAAGAAGGGCTTCGCTNCTTCTTCTTCTTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8507#0 GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTAC 60 consensus_8507#1 ------------------------------------------------------------ consensus_8507#2 ------------------------------------------------------------ consensus_8507#0 AAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTC 120 consensus_8507#1 ------------------------------------------------------------ consensus_8507#2 ------------------------------------------------------------ consensus_8507#0 GTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC 180 consensus_8507#1 ------------------------------------------------------------ consensus_8507#2 ------------------------------------------------------------ consensus_8507#0 ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAATGACCCTGAACTT 240 consensus_8507#1 ------------------------------------------------------------ consensus_8507#2 ------------------------------------------------------------ consensus_8507#0 AGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTGCAGCAG 300 consensus_8507#1 ----------------------------------GGANTCGCNAGCTTGCTTGGCCGGGA 26 consensus_8507#2 ----------------------------------------ACGAGACGAAACGGTAAAGA 20 ** * consensus_8507#0 ATT-GTAGCTGAGGAGCATAGCCATCACATGAAT-GCCACCCTTGTTGAAGCTAAAAGAC 358 consensus_8507#1 CNT-GACAGGGGGGAGCATAGCC--TACATGAAT-GCC-CCCTTGTTGAAGCTAAA-GAC 80 consensus_8507#2 ATCCGGCAGCAGCAAGCAGGAGA---GCGCGACTCGNCGTCCCCGCTCCGCTCCACACGC 77 * **** * ** * * * ** * * * * consensus_8507#0 AAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGG 418 consensus_8507#1 AAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGCAGCCACAGAGACTTGCGAGG 140 consensus_8507#2 ATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACG--GNC-TGGAGCNATNGGGCG 134 * * * ** * ** *** * *** * * *** * * * consensus_8507#0 AAGCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGG 478 consensus_8507#1 AAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGG 200 consensus_8507#2 GCGCGGGGGCGCGGCG-GTNGCGGCGGCGTNCGGGCGGTNGTGCCTNGTGATCCTN---- 189 ** *** **** * ***** * * * ** * consensus_8507#0 AGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGAT 538 consensus_8507#1 AGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTNGAT 260 consensus_8507#2 -GCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCC--GGCCTTCTANTTGCG-CTACAAGAA 245 ** * *** * * ** * * ** * * * * * * * * * ** consensus_8507#0 AGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTG 598 consensus_8507#1 AGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTG 320 consensus_8507#2 GGGCT------TCGCTNCTTCTTCTTCTTCTTC--------------------------- 272 * * *** * * * *** ****** consensus_8507#0 CTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGT 658 consensus_8507#1 CTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGNAATGT 380 consensus_8507#2 ------------------------------------------------------------ consensus_8507#0 ATGTCTATGTATTATCATCAGC-TGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACT 717 consensus_8507#1 ATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGANNATCATANTTAAATGTAACT 440 consensus_8507#2 ------------------------------------------------------------ consensus_8507#0 AGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATG 777 consensus_8507#1 AGTATACATTNACTCAATGTTCGGATTTANTGTGACATACCGNAGATNTGCTGNGGAATG 500 consensus_8507#2 ------------------------------------------------------------ consensus_8507#0 TGGATGACACACT-TTGTTTATGATGCAAAAAA--------------------------- 809 consensus_8507#1 TGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACNCTAGCCTTANCTAACTTAAG 560 consensus_8507#2 ------------------------------------------------------------ consensus_8507#0 ------------------------------------------------------------ consensus_8507#1 CTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCGCATAATGCATTCTTTTCCCG 620 consensus_8507#2 ------------------------------------------------------------ consensus_8507#0 ------------------- consensus_8507#1 CACANAANTTCCANACACN 639 consensus_8507#2 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||