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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 809 fasta sequence
[GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTACAAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTCGTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC-ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAA-TGACCCTGAACTTAGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTG-CAGCAGATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGGATGACACACTTTGTTTATGATGCAAAAAA]
[+] EMBL CA999482 [GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTACAAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTCGTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAA T ]
[-] EMBL BI306384 [ CGCTCTCCCTCCAGTCC ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAA TGACCCTGAACTTAGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTG CAGCAGATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGGATGACAC ]
[+] EMBL AU097064 [ aAGTCCNATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAATTGNCCCTGAACTTAGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTGNCAGCAGATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGGATGACACACTTTGTTTATGATGCAAAAAA]
consensusID : consensus_8507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[GGANTCGCNAGCTTGCTTGGCCGGGACNTGACAGGGGGGAGCATAGCCTACATGAATGCCCCCTTGTTGAAGCTAAAGACAAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTNGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGNAATGTATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGANNATCATANTTAAATGTAACTAGTATACATTNACTCAATGTTCGGATTTANTGTGACATACCGNAGATNTGCTGNGGAATGTGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACNCTAGCCTTANCTAACTTAAGCTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCGCATAATGCATTCTTTTCCCGCACANAANTTCCANACACN]
[+] EMBL CA764882 [GGANTCGCNAGCTTGCTTGGCCGGGACNTGACAGGGGGGAGCATAGCCTACATGAATGCCCCCTTGTTGAAGCTAAAGACAAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTNGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGNAATGTATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGANNATCATANTTAAATGTAACTAGTATACATTNACTCAATGTTCGGATTTANTGTGACATACCGNAGATNTGCTGNGGAATGTGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACNCTAGCCTTANCTAACTTAAGCTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCGCATAATGCATTCTTTTCCCGCACANAANTTCCANACACN]
consensusID : consensus_8507#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[ACGAGACGAAACGGTAAAGAATCCGGCAGCAGCAAGCAGGAGAGCGCGACTCGNCGTCCCCGCTCCGCTCCACACGCATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACGGNCTGGAGCNATNGGGCGGCGCGGGGGCGCGGCGGTNGCGGCGGCGTNCGGGCGGTNGTGCCTNGTGATCCTNGCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCCGGCCTTCTANTTGCGCTACAAGAAGGGCTTCGCTNCTTCTTCTTCTTCTTC]
[+] EMBL OSS1806A [ACGAGACGAAACGGTAAAGAATCCGGCAGCAGCAAGCAGGAGAGCGCGACTCGNCGTCCCCGCTCCGCTCCACACGCATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACGGNCTGGAGCNATNGGGCGGCGCGGGGGCGCGGCGGTNGCGGCGGCGTNCGGGCGGTNGTGCCTNGTGATCCTNGCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCCGGCCTTCTANTTGCGCTACAAGAAGGGCTTCGCTNCTTCTTCTTCTTCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8507#0 GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTAC 60
consensus_8507#1 ------------------------------------------------------------
consensus_8507#2 ------------------------------------------------------------
consensus_8507#0 AAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTC 120
consensus_8507#1 ------------------------------------------------------------
consensus_8507#2 ------------------------------------------------------------
consensus_8507#0 GTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC 180
consensus_8507#1 ------------------------------------------------------------
consensus_8507#2 ------------------------------------------------------------
consensus_8507#0 ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAATGACCCTGAACTT 240
consensus_8507#1 ------------------------------------------------------------
consensus_8507#2 ------------------------------------------------------------
consensus_8507#0 AGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTGCAGCAG 300
consensus_8507#1 ----------------------------------GGANTCGCNAGCTTGCTTGGCCGGGA 26
consensus_8507#2 ----------------------------------------ACGAGACGAAACGGTAAAGA 20
** *
consensus_8507#0 ATT-GTAGCTGAGGAGCATAGCCATCACATGAAT-GCCACCCTTGTTGAAGCTAAAAGAC 358
consensus_8507#1 CNT-GACAGGGGGGAGCATAGCC--TACATGAAT-GCC-CCCTTGTTGAAGCTAAA-GAC 80
consensus_8507#2 ATCCGGCAGCAGCAAGCAGGAGA---GCGCGACTCGNCGTCCCCGCTCCGCTCCACACGC 77
* **** * ** * * * ** * * * *
consensus_8507#0 AAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGG 418
consensus_8507#1 AAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGCAGCCACAGAGACTTGCGAGG 140
consensus_8507#2 ATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACG--GNC-TGGAGCNATNGGGCG 134
* * * ** * ** *** * *** * * *** * * *
consensus_8507#0 AAGCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGG 478
consensus_8507#1 AAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGG 200
consensus_8507#2 GCGCGGGGGCGCGGCG-GTNGCGGCGGCGTNCGGGCGGTNGTGCCTNGTGATCCTN---- 189
** *** **** * ***** * * * ** *
consensus_8507#0 AGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGAT 538
consensus_8507#1 AGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTNGAT 260
consensus_8507#2 -GCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCC--GGCCTTCTANTTGCG-CTACAAGAA 245
** * *** * * ** * * ** * * * * * * * * * **
consensus_8507#0 AGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTG 598
consensus_8507#1 AGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTG 320
consensus_8507#2 GGGCT------TCGCTNCTTCTTCTTCTTCTTC--------------------------- 272
* * *** * * * *** ******
consensus_8507#0 CTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGT 658
consensus_8507#1 CTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGNAATGT 380
consensus_8507#2 ------------------------------------------------------------
consensus_8507#0 ATGTCTATGTATTATCATCAGC-TGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACT 717
consensus_8507#1 ATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGANNATCATANTTAAATGTAACT 440
consensus_8507#2 ------------------------------------------------------------
consensus_8507#0 AGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATG 777
consensus_8507#1 AGTATACATTNACTCAATGTTCGGATTTANTGTGACATACCGNAGATNTGCTGNGGAATG 500
consensus_8507#2 ------------------------------------------------------------
consensus_8507#0 TGGATGACACACT-TTGTTTATGATGCAAAAAA--------------------------- 809
consensus_8507#1 TGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACNCTAGCCTTANCTAACTTAAG 560
consensus_8507#2 ------------------------------------------------------------
consensus_8507#0 ------------------------------------------------------------
consensus_8507#1 CTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCGCATAATGCATTCTTTTCCCG 620
consensus_8507#2 ------------------------------------------------------------
consensus_8507#0 -------------------
consensus_8507#1 CACANAANTTCCANACACN 639
consensus_8507#2 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||