These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1667 fasta sequence [CAGCAACTCATCTGTCGAGGGAGTGGTGCTGTGGTGGTGGTGGTCATGGACTCATTGGGCATGGCCGCCTCGTCCGAGCCAAAGGCATGTGAAGCGCTCGGAGTCAGAGAGACCAGGGCTGGGCTGGCGCCTGCTCGCTTCCCGAGAGAACCCCTTGTGAAGATTCGAGCCAACCCCTTCCCCCTTCCTCTTCTCTCTCTTTTTCTCTCGCTTCTCCTCTTCTTTAAAGCATGGACCAGCGCCTAGTAGCATCTCCATCCACGGCAGTAGGCAGCCGGTGCCATGGGAGGGGGGAAGTAGGAGGGTTTTTCTTCTTCTTCTTTCTTCTCTCTCGTTTTCTCGCAGAATCATCTGTGTGCAGATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGCTTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGTGGACGTTGAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGATCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTGGGATAGGCTTATGGCTTGCATGCCCCAGGAGCTGCATCAACCGTACATGGACCCTCTTTGGATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTTTACTGTTCTGGATTTCCATCGTTCTCCTCTTGAGTCTTCTTGACTTAGCGCTTTTTTTTTCTTTTTTTAAAAGAAAAAATAACTTTTTTTTCAGGATTGTGCTCCATGCGTATGAGCATGGTGGTGATGATGTATGTTGCCAGATAGCAGTAGTATTAATATTGTTGCAGGTGTGGTGGAGGGTACTAGGAATTTAGGTGGTAGCAGTACATACTTGGTCACCAGTATCTAGTGCCCTTTTCCTTGTTGGG-AAAAAGTTGCTTCTATCGCCATGCTTATCCTTCCTCTTTCGGCTCTTCTTTGCACAGCAGCTCTAGATCTTTTGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGATGCTTCAGAACTTAGGAGGCTTTTAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTA-TTAGTTTGTTCTATGGGTAGCCTTTGCGTATTTAAAGCGATTTATCACTTCGCCGATGAATCTAG-TTTGCTGTTCTCTGAAATTGCT-GGAGTTCAATCCTTGTTTGCTCTTGAAGTCTTGATAGTTTGCTTAGTGATGCACTGATGAACCTGTGTATATCCTTTTCAGATGACCACAACCAACTGATTCCTATTGCAGCTAACTCAAGTGTGGAACTAGCTTTACGCTTGAAGCTTTCATTCAGAAAAAAAATAGCCTGCTTAAGTCAATTTGTGCTTTCATGCACATTCTACATACGGAGTAGTTTGTGTTTTGACTGTTGGGGCTTGAAGGTGTTTGTTTTATTTCCTCAATTTTGTGTGTTATTTTTCCACTTTATAGCCATGCCACTTGTCTAATGGATCCTTGTGTAATGTAATCTGTACTTTCCGCTCGGAATAGGGACTTGATGCAATGGCCAAA] [+] EMBL AK062682 [CAGCAACTCATCTGTCGAGGGAGTGGTGCTGTGGTGGTGGTGGTCATGGACTCATTGGGCATGGCCGCCTCGTCCGAGCCAAAGGCATGTGAAGCGCTCGGAGTCAGAGAGACCAGGGCTGGGCTGGCGCCTGCTCGCTTCCCGAGAGAACCCCTTGTGAAGATTCGAGCCAACCCCTTCCCCCTTCCTCTTCTCTCTCTTTTTCTCTCGCTTCTCCTCTTCTTTAAAGCATGGACCAGCGCCTAGTAGCATCTCCATCCACGGCAGTAGGCAGCCGGTGCCATGGGAGGGGGGAAGTAGGAGGGTTTTTCTTCTTCTTCTTTCTTCTCTCTCGTTTTCTCGCAGAATCATCTGTGTGCAGATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGCTTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGTGGACGTTGAGCTC ] [+] EMBL AK100209 [ GGACTCATTGGGCATGGCCGCCTCGTCCGAGCCAAAGGCATGTGAAGCGCTCGGAGTCAGAGAGACCAGGGCTGGGCTGGCGTCTGCTCGCTTCCCGAGAGAACCCCTTGTGAAGATTCGAGCCAACCCCTTCCCCCTTCCTCTTCTCTCTCTTTTTCTCTCGCTTCTCCTCTTCTTTAAAGCATGGACCAGCGCCTAGTAGCATCTCCATCCACGGCAGTAGGCAGCCGGTGCCATGGGAGGGGGGAAGTAGGAGGGTTTTTCTTCTTCTTCTTTCTTCTCTCTCGTTTTCTCGCAGAATCATCTGTGTGCAGATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGCTTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGTGGACGTTGAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGATCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTGGGATAGGCTTATGGCTTGCATGCCCCAGGAGCTGCATCAACCGTACATGGACCCTCTTTGGATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTTTACTGTTCTGGATTTCCATCGTTCTCCTCTTGAGTCTTCTTGACTTAGCGCTTTTTTTTTCTTTTTTTAAAAGAAAAAATAACTTTTTTTTCAGGATTGTGCTCCATGCGTATGAGCATGGTGGTGATGATGTATGTTGCCAGATAGCAGTAGTATTAATATTGTTGCAGGTGTGGTGGAGGGTACTAGGAATTTAGGTGGTAGCAGTACATACTTGGTCACCAGTATCTAGTGCCCTTTTCCTTGTTGGG AAAAAGTTGCTTCTATCGCCATGCTTATCCTTCCTCTTTCGGCTCTTCTTTGCACAGCAGCTCTAGATCTTTTGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGATGCTTCAGAACTTAGGAGGCTTTTAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTA TTAGTTTGTTCTATGGGTAGCCTTTGCGTATTTAAAGCGATTTATCACTTCGCCGATGAATCTAG TTTGCTGTTCTCTGAAATTGCT GGAGTTCAATCCTTGTTTGCTCTTGAAGTCTTGATAGTTTGCTTAGTGATGCACTGATGAACCTGTGTATATCCTTTTCAGATGACCACAACCAACTGATTCCTATTGCAGCTAACTCAAGTGTGGAACTAGCTTTACGCTTGAAGCTTTCATTCAGAAAAAAAATAGCCTGCTTAAGTCAATTTGTGCTTTCATGCACATTCTACATACGGAGTAGTTTGTGTTTTGACTGTTGGGGCTTGAAGGTGTTTGTTTTATTTCCTCAATTTTGTGTGTTATTTTTCCACTTTATAGCCATGCCACTTGTCTAATGGATCCTTGTGTAATGTAATCTGTACTTTCCGCTCGGAATAGGGACTTGATGCAATGGCCAAA] [+] EMBL CF303003 [ GCAGATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGCTTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGTGGACGTTGAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGATCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTGGGATAGGCTTATGGCTTGCATGCCCCAGGAGCTGCATCAACCCTACATGGACCCTCTTTGGATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTNTACTGTTCTGGATTTCCATCGTTCTCCTCTTGAGTC ] [+] EMBL CF308674 [ CCCTCTTTGGATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTTTACTGTTCTGGATTTCCATCGTTCTCCTCTTGAGTCTTCTTGACTTAGCGCTTTTTTTTTCTTTTTTTAAAAGAAAAAATAACTTTTTTTTCAGGATTGTGCTCCATGCGTATGAGCATGGTGGTGATGATGTATGTTGCCAGATAGCAGTAGTATTAATATTGTTGCAGGTGTGGTGGAGGGTACTAGGAATTTAGGTGGTAGCAGTACATACTTGGTCACCAGTATCTAGTGCCCTTTTCCTTGTTGGGAAAAAAGTTGCTTCTATCGCCATGCTTATCCTTCCTCTTTCGGCTCTTCTTTGCACAGCAGCTCTAGATCTTTTGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGATGCTTCAGAACTTAGGAGGCTTTTAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTATTTAGTTTGTTCTATGGGTAGCCTTTGCGTATTTAAAGCGATTTATCACTTCGCCGATGAATCTAGTTTTGCTGTTCTCTGAAATTGCTGGGAGTTC ] consensusID : consensus_8511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [TCCTTCCCTTCGCNTTGGATCNAGGNACTCNTNAATCTTNGTGGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGGATGCTTCAGAAACTTAGGANGCTTTCAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTATCAGTTTGTTCTATGGGTNGCCTTTGCGTTNTTTAAAGCGATTTATCACTTCTCCGATGAAATCTAGTTTGCTGTTCCTCTGAAAATANCTGGGAGTTCAAAACCTTGTTTTGCTCTTGAAAGTCTTGAATAAGTTTGCTTAAGTGATGCACTGAATGAAACCTGTGTTATGTCCTTTTCAGAAGACCACAACCAACTGAATTCCTATTGCAAGCTAAAGTTGTTGGGAAACTAAGCTTTACGCTTGAAAGC] [+] EMBL AA754622 [TCCTTCCCTTCGCNTTGGATCNAGGNACTCNTNAATCTTNGTGGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGGATGCTTCAGAAACTTAGGANGCTTTCAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTATCAGTTTGTTCTATGGGTNGCCTTTGCGTTNTTTAAAGCGATTTATCACTTCTCCGATGAAATCTAGTTTGCTGTTCCTCTGAAAATANCTGGGAGTTCAAAACCTTGTTTTGCTCTTGAAAGTCTTGAATAAGTTTGCTTAAGTGATGCACTGAATGAAACCTGTGTTATGTCCTTTTCAGAAGACCACAACCAACTGAATTCCTATTGCAAGCTAAAGTTGTTGGGAAACTAAGCTTTACGCTTGAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8511#0 CAGCAACTCATCTGTCGAGGGAGTGGTGCTGTGGTGGTGGTGGTCATGGACTCATTGGGC 60 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 ATGGCCGCCTCGTCCGAGCCAAAGGCATGTGAAGCGCTCGGAGTCAGAGAGACCAGGGCT 120 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GGGCTGGCGCCTGCTCGCTTCCCGAGAGAACCCCTTGTGAAGATTCGAGCCAACCCCTTC 180 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 CCCCTTCCTCTTCTCTCTCTTTTTCTCTCGCTTCTCCTCTTCTTTAAAGCATGGACCAGC 240 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GCCTAGTAGCATCTCCATCCACGGCAGTAGGCAGCCGGTGCCATGGGAGGGGGGAAGTAG 300 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GAGGGTTTTTCTTCTTCTTCTTTCTTCTCTCTCGTTTTCTCGCAGAATCATCTGTGTGCA 360 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGC 420 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 TTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGT 480 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GGACGTTGAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGG 540 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGATCTGAAAGAAACT 600 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 ACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTG 660 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GGATAGGCTTATGGCTTGCATGCCCCAGGAGCTGCATCAACCGTACATGGACCCTCTTTG 720 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTTTACTGTTCTGGATTTCC 780 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 ATCGTTCTCCTCTTGAGTCTTCTTGACTTAGCGCTTTTTTTTTCTTTTTTTAAAAGAAAA 840 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 AATAACTTTTTTTTCAGGATTGTGCTCCATGCGTATGAGCATGGTGGTGATGATGTATGT 900 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 TGCCAGATAGCAGTAGTATTAATATTGTTGCAGGTGTGGTGGAGGGTACTAGGAATTTAG 960 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GTGGTAGCAGTACATACTTGGTCACCAGTATCTAGTGCCCTTTTCCTTGTTGGGAAAAAG 1020 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 TTGCTTCTATCGCCATGCTTATCCTTCCTCTTTCGGCTCTTCTTTGCACAGCAGCTCTAG 1080 consensus_8511#1 ------------------------TCCTTCCCTTCGCNTTGGATCNAGGNACTCNTNAAT 36 * * ** * ** * * * * * consensus_8511#0 ATCTTTTGGTTTCCTGCTCTACTGGAATCTGATAATGCTGG-ATGCTTCAGAA-CTTAGG 1138 consensus_8511#1 CTTNGTGGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGGATGCTTCAGAAACTTAGG 96 * * ********************************** *********** ****** consensus_8511#0 AGGCTTTTAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATAT 1198 consensus_8511#1 ANGCTTTCAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATAT 156 * ***** **************************************************** consensus_8511#0 ATCTTTATTAGTTTGTTCTATGGGTAGCCTTTGCGT-ATTTAAAGCGATTTATCACTTCG 1257 consensus_8511#1 ATCTTTATCAGTTTGTTCTATGGGTNGCCTTTGCGTTNTTTAAAGCGATTTATCACTTCT 216 ******** **************** ********** ********************* consensus_8511#0 CCGATGAA-TCTAGTTTGCTGTTC-TCTGAAATTGCT--GGAGTTCAAT-CCTTGTTT-G 1311 consensus_8511#1 CCGATGAAATCTAGTTTGCTGTTCCTCTGAAAATANCTGGGAGTTCAAAACCTTGTTTTG 276 ******** *************** ******* * ********* ******** * consensus_8511#0 CTCTTGAA-GTCTTGAT--AGTTTGCTTA-GTGATGCACTGAT--GAACCTGTGT-ATAT 1364 consensus_8511#1 CTCTTGAAAGTCTTGAATAAGTTTGCTTAAGTGATGCACTGAATGAAACCTGTGTTATGT 336 ******** ******* ********** ************ ********* ** * consensus_8511#0 CCTTTTCAGATGACCACAACCAACTGA-TTCCTATTGCA-GCTAACTCAAGTGTGGAACT 1422 consensus_8511#1 CCTTTTCAGAAGACCACAACCAACTGAATTCCTATTGCAAGCTAAAGTTGTTGGGAAACT 396 ********** **************** *********** ***** ** * **** consensus_8511#0 A-GCTTTACGCTTGAAGCTTTCATTCAGAAAAAAAATAGCCTGCTTAAGTCAATTTGTGC 1481 consensus_8511#1 AAGCTTTACGCTTGAAAGC----------------------------------------- 415 * ************** consensus_8511#0 TTTCATGCACATTCTACATACGGAGTAGTTTGTGTTTTGACTGTTGGGGCTTGAAGGTGT 1541 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 TTGTTTTATTTCCTCAATTTTGTGTGTTATTTTTCCACTTTATAGCCATGCCACTTGTCT 1601 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 AATGGATCCTTGTGTAATGTAATCTGTACTTTCCGCTCGGAATAGGGACTTGATGCAATG 1661 consensus_8511#1 ------------------------------------------------------------ consensus_8511#0 GCCAAA 1667 consensus_8511#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||