These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1071 fasta sequence [CACCATGGCGGCCGCCGCTGACGACGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGAGGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCGGGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTTCCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAGCGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTCTGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTTGAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGGAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTGATG-CGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCAC-TTCAGTCGGGCAGAACAAGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCATGCTGAACCTAC-AAAG-ATCCCTGTCTACCTG-AACCCAGGGTCCCTTGTTC-TCATGTC-AGGCGACG-CGAGATACTTAT-GGAAACATG-AGAT-AAACCGCAA-GCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAATTTGGGCACCTAAATGGTTAGGTGTCTCTGTTAGCTTGTGATCAGATTTTTGTACTTCTGGTTAAGTTGGAAACCCCAACATCGTTTTATTTCTTCCTGCTGTTTTTGTTTTCTGCCTGTATCGAACAACCTTTATGCTTTGTTAGTAAAGCTGGCGAAAGCCTTTGATCTA] [+] EMBL AK059959 [CACCATGGCGGCCGCCGCTGACGACGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGAGGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCGGGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTTCCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAGCGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTCTGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTTGAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGGAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTGATG CGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCAC TTCAGTCGGGCAGAACAAGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCATGCTGAACCTAC AAAG ATCCCTGTCTACCTG AACCCAGGGTCCCTTGTTC TCATGTC AGGCGACG CGAGATACTTAT GGAAACATG AGAT AAACCGCAA GCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAATTTGGGCACCTAAATGGTTAGGTGTCTCTGTTAGCTTGTGATCAGATTTTTGTACTTCTGGTTAAGTTGGAAACCCCAACATCGTTTTATTTCTTCCTGCTG ] [+] EMBL AU093328 [ CGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGAGGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCGGGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTTCCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAGCGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTCTGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTTGAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGGAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATNCGAGCCATGTGAGGGCATCTGTGCTCATGTTGATCTGATGCCGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCACTTTCATTCGGGCAGAACANGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCATGCTGAACCTACAAAAGAATCCCTGTCTACCTGAAACCCAGGGTNCCTTGGTCTTCATGTCAAGGCGACGCCAAGATACTTATGGGAAACATGAAGATNAAACCGCAANGCCAAGT ] [+] EMBL AU058034 [ T AAACCGNAA NCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAATTTGGGCACCTAAATGNTTAGGTGTCTCTGTTAGCTTGTGATCAGATTTTTGTACTTCTGGTTAAGTTGGAAACCCCAACATCGTTTTATTTCTTCCTGCTGTTTTTGTTTTCTGCCTGTATCGAACAACCTTTATGCTTTGTTAGTAAAGCTGGCGAAAGCCTTTGATCTA] consensusID : consensus_8513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [NATGCATGTCCTTACCTTTGCTGTGGGAAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTGATGCGCTTTGATGATGGGAATCGCGATAGTCTCCCTTGAAGTCACCATGCGTGATGCACTTCAGTCGGGCAGAAACAAGAAAGTCCTATCTGTGAGACACTGGANAGTGTGCATGCTGAAACCNANNAAGATCCCTGTNTACCTGAACCANGGGTCCCCATGTTCTCATGTCAGGGCGACGCGAAGATACTTATGGGAAACATGTAGATAAACCGCAAGCCCANGTTGCTCAACCAATGGGGGTGGCAGGGGAAGCTTGAAGCANCCAGAATNTTNAACTTNNATTNCNCTGGAGGGAAGCTCCTTCCATCCACCAAACTAATACCAGCCAGAAACAGTTGTTCANGGAAATTTCTCCAGGNTTTTTTGTTCCCAAGC] [+] EMBL AA754621 [NATGCATGTCCTTACCTTTGCTGTGGGAAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTGATGCGCTTTGATGATGGGAATCGCGATAGTCTCCCTTGAAGTCACCATGCGTGATGCACTTCAGTCGGGCAGAAACAAGAAAGTCCTATCTGTGAGACACTGGANAGTGTGCATGCTGAAACCNANNAAGATCCCTGTNTACCTGAACCANGGGTCCCCATGTTCTCATGTCAGGGCGACGCGAAGATACTTATGGGAAACATGTAGATAAACCGCAAGCCCANGTTGCTCAACCAATGGGGGTGGCAGGGGAAGCTTGAAGCANCCAGAATNTTNAACTTNNATTNCNCTGGAGGGAAGCTCCTTCCATCCACCAAACTAATACCAGCCAGAAACAGTTGTTCANGGAAATTTCTCCAGGNTTTTTTGTTCCCAAGC] consensusID : consensus_8513#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [ACATGAGATAAACCGCAAGCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU164958 [ACATGAGATAAACCGCAAGCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8513#0 CACCATGGCGGCCGCCGCTGACGACGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGA 60 consensus_8513#1 ------------------------------------------------------------ consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 GGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCG 120 consensus_8513#1 ------------------------------------------------------------ consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 GGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTT 180 consensus_8513#1 ------------------------------------------------------------ consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 CCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAG 240 consensus_8513#1 ------------------------------------------------------------ consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 CGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTC 300 consensus_8513#1 ------------------------------------------------------------ consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 TGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTT 360 consensus_8513#1 ------------------------------------------------------------ consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 GAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGG--AGGAAACCG 418 consensus_8513#1 ----------------NATGCATGTCCTT-ACC------TTTGCTGTGGGAAGGAAACCG 37 consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 CTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTT 478 consensus_8513#1 CTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTT 97 consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 GATCTGATGCGCTTTGATGATGG-AATCGCGATAGTCTCCCTTGA-GTCACCATGCGTGA 536 consensus_8513#1 GATCTGATGCGCTTTGATGATGGGAATCGCGATAGTCTCCCTTGAAGTCACCATGCGTGA 157 consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 TGCACTTCAGTCGGGCAGAA-CAAGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCAT 595 consensus_8513#1 TGCACTTCAGTCGGGCAGAAACAAGAAAGTCCTATCTGTGAGACACTGGANAGTGTGCAT 217 consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 GCTGAA-CCTACAAAGATCCCTGTCTACCTGAACCCAGGGTCCCT-TGTTCTCATGTCAG 653 consensus_8513#1 GCTGAAACCNANNAAGATCCCTGTNTACCTGAACCANGGGTCCCCATGTTCTCATGTCAG 277 consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 G-CGACGCGA-GATACTTATGG-AAACATG-AGATAAACCGCAAGCC--AGGTGCTCAGC 707 consensus_8513#1 GGCGACGCGAAGATACTTATGGGAAACATGTAGATAAACCGCAAGCCCANGTTGCTCAAC 337 consensus_8513#2 -------------------------ACATG-AGATAAACCGCAAGCC--AGGTGCTCAGC 32 ***** **************** * ****** * consensus_8513#0 -AATGGGG-TGGCAGGG--AGCTTGA-GCAGC---AGATAAGAACTTCAATTACACTGA- 758 consensus_8513#1 CAATGGGGGTGGCAGGGGAAGCTTGAAGCANCCAGAATNTTNAACTTNNATTNCNCTGGA 397 consensus_8513#2 -AATGGGG-TGGCAGGG--AGCTTGA-GCAGC---AGATAAGAACTTCAATTACACTGA- 83 ******* ******** ******* *** * * ***** *** * *** consensus_8513#0 -GGAAGCTCCTTCCATC-ACCAAACTAATACCAGC--AGAACAGTTGTC--AGGAAATTT 812 consensus_8513#1 GGGAAGCTCCTTCCATCCACCAAACTAATACCAGCCAGAAACAGTTGTTCANGGAAATTT 457 consensus_8513#2 -GGAAGCTCCTTCCATC-ACCAAACTAATACCAGC--AGAACAGTTGTC--AGGAAATTT 137 **************** ***************** ********* ******** consensus_8513#0 CTCCAG-TTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGA 871 consensus_8513#1 CTCCAGGNTTTTTTGTTCCCAAGC------------------------------------ 481 consensus_8513#2 CTCCAG-TTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGA 196 ****** *********** * * consensus_8513#0 TGTTGATGCTTACGAGATTATGATCAAATTTGGGCACCTAAATGGTTAGGTGTCTCTGTT 931 consensus_8513#1 ------------------------------------------------------------ consensus_8513#2 TGTTGATGCTTACGAGATTATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 256 consensus_8513#0 AGCTTGTGATCAGATTTTTGTACTTCTGGTTAAGTTGGAAACCCCAACATCGTTTTATTT 991 consensus_8513#1 ------------------------------------------------------------ consensus_8513#2 AAA--------------------------------------------------------- 259 consensus_8513#0 CTTCCTGCTGTTTTTGTTTTCTGCCTGTATCGAACAACCTTTATGCTTTGTTAGTAAAGC 1051 consensus_8513#1 ------------------------------------------------------------ consensus_8513#2 ------------------------------------------------------------ consensus_8513#0 TGGCGAAAGCCTTTGATCTA 1071 consensus_8513#1 -------------------- consensus_8513#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||