|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1357 fasta sequence
[GGCGGAGGGATTTGGCAGGCGGTGGAGGCCGAGCCCGGCGCTTCCGGCTGGCGGCGGTTGGATCCGCTGTCCTCGCGGCTGGACCTCGTCGGACCCTTGGCGACGGCGACGGGTTCTCTCCGCGGTGCGGCACCCTCGCCGTTGCAGCTCCATGTGACCACGGAGGGCCTCGGCTCAGCATCCTCATCGTCGCGCCCCCCTCCCCCTGGTGCCGGCGGTGTGGGCTGGGCCCGGTGCCCCCAGCTGGCGGCGCCTAGCGATGGCGGGCTCCTTCCCCCGTTGTCCCCGTCCCCCCCCCCACAGGTTGTCCATGCGTGCAGCGTTGGGTCTGGGACGGCACACGTGGAGCTACGAGGGCCGGCGACGTAGCTCTACCCTCCAGCCGCCGCCGGCCGGGGTTGTGCGTGGAGGGGCTGGCTTCGGAAGCCCGGACGTCCTCCTACGCGCGTTTTGGCTGCCGACACGTCCCCTTGGTTGCAACAAACCTCTTCCCCTTCTCCCTAGTGCCCTCGATATTGTGCCTTCTTCCCTCCCCGCTCCAAACCTGGGCCTATTCCATTGTTCTTTGGTTTGCTGGTGTTATTCCCCGTTCAAAATCTTCTCATTTTCAGCTTGCTCTTGACAATTGGTCCAGATGTTTGTTCTGGGATTTGTGCTCCTCTAGCACCTTGGCTGGCCTCTGCTCTGTGCCCTCCGCTGAGGTTGCGGTTGATGATCTTTCATCAGTGAATTCCCCCCCTTAGCCATTTTCCTTTTGTCTAACTCCTGCTCATCTTCACCCCCTTCCTTGAGACCGTCCAAGACCTTTCAGCGTTTCTCCCTCCTTTTAGGCTTCCTTCCCTTGAAGGACGTTGGAGTGTGTTGATCTAACAAGCAACTCGATAAAGTTTGATTGAAGAAAACTCATTGTGGGTGGCCTTCGGCCACATCTTTCAGTGCCCTCCCTCTTCTGGGGCTTCCTTCCCCCAGAGGGCGTCGGCGGGCTTTGATCCAAACAACAATAAGATCAAGTTAGCTTCTTGATGACTTCATGCGGGTGGCCTAGGACTTCTACAACCTTTCTTTGGCCTTTCTTCTATTCCGGCATGCTTGTGGCTGCGTGAGGAAATGGATGTTGATAAGCTAGGGTGTTAGCTTTAGGTTTTGGTTTTGGCCGGGTAATTTTGTAGATGTCGTTTGTCAATTGTTATATTTTAGGAGGTTTTCCTTTCTCTGTTCTCTCCTCTTTGTATTCCCCGTGTATTCTGTTCTCCTATCCTCCAGGGCTTCTGCGTTTCTATAGGTGAAGCCTGCCCTGTGTAAGCTCATTTGGCTTAATATATTCAGGTGGGGACTCCCCCCCCTGCCGGTGATTTAG]
[+] EMBL AK069310 [GGCGGAGGGATTTGGCAGGCGGTGGAGGCCGAGCCCGGCGCTTCCGGCTGGCGGCGGTTGGATCCGCTGTCCTCGCGGCTGGACCTCGTCGGACCCTTGGCGACGGCGACGGGTTCTCTCCGCGGTGCGGCACCCTCGCCGTTGCAGCTCCATGTGACCACGGAGGGCCTCGGCTCAGCATCCTCATCGTCGCGCCCCCCTCCCCCTGGTGCCGGCGGTGTGGGCTGGGCCCGGTGCCCCCAGCTGGCGGCGCCTAGCGATGGCGGGCTCCTTCCCCCGTTGTCCCCGTCCCCCCCCCCACAGGTTGTCCATGCGTGCAGCGTTGGGTCTGGGACGGCACACGTGGAGCTACGAGGGCCGGCGACGTAGCTCTACCCTCCAGCCGCCGCCGGCCGGGGTTGTGCGTGGAGGGGCTGGCTTCGGAAGCCCGGACGTCCTCCTACGCGCGTTTTGGCTGCCGACACGTCCCCTTGGTTGCAACAAACCTCTTCCCCTTCTCCCTAGTGCCCTCGATATTGTGCCTTCTTCCCTCCCCGCTCCAAACCTGGGCCTATTCCATTGTTCTTTGGTTTGCTGGTGTTATTCCCCGTTCAAAATCTTCCCATTTTCAGCTTGCTCTTGACAATTGGTCCAGATGTTTGTTCTGGGATTTGTGCTCCTCTAGCACCTTGGCTGGCCTCTGCTCTGTGCCCTCCGCTGAGGTTGCGGTTGATGATCTTTCATCAGTGAATTCCCCCCCTTAGCCATTTTCCTTTTGTCTAACTCCTGCTCATCTTCACCCCCTTCCTTGAGACCGTCCAAGACCTTTCAGCGTTTCTCCCTCCTTTTAGGCTTCCTTCCCTTGAAGGACGTTGGAGTGTGTTGATCTAACAAGCAACTCGATAAAGTTTGATTGAAGAAAACTCATTGTGGGTGGCCTTCGGCCACATCTTTCAGTGCCCTCCCTCTTCTGGGGCTTCCTTCCCCCAGAGGGCGTCGGCGGGCTTTGATCCAAACAACAATAAGATCAAGTTAGCTTCTTGATGACTTCATGCGGGTGGCCTAGGACTTCTACAACCTTTCTTTGGCCTTTCTTCTATTCCGGCATGCTTGTGGCTGCGTGAGGAAATGGATGTTGATAAGCTAGGGTGTTAGCTTTAGGTTTTGGTTTTGGCCGGGTAATTTTGTAGATGTCGTTTGTCAATTGTTATATTTTAGGAGGTTTTCCTTTCTCTGTTCTCTCCTCTTTGTATTCCCCGTGTATTCTGTTCTCCTATCCTCCAGGGCTTCTGCGTTTCTATAGGTGAAGCCTGCCCTGTGTAAGCTCATTTGGCTTAATATATTCAGGTGGGGACTCCCCCCCCTGCCGG ]
[+] EMBL CB658042 [ GCGGTGGAGGCCGAGCCCGGCGCTTCCGGCTGGCGGCGGTTGGATCCGCTGTCCTCGCGGCTGGACCTCGTCGGACCCTTGGCGACGGCGACGGGTTCTCTCCGCGGTGCGGCACCCTCGCCGTTGCAGCTCCATGTGACCACGGAGGGCCTCGGCTCAGCATCCTCATCGTCGCGCCCCCCTCCCCCTGGTGCCGGCGGTGTGGGCTGGGCCCGGTGCCCCCAGCTGGCGGCGCCTAGCGATGGCGGGCTCCTTCCCCCGTTGTCCCCGTCCCCCCCCCCACAGGTTGTCCATGCGTGCAGCGTTGGGTCTGGGACGGCACACGTGGAGCTACGAGGGCCGGCGACGTAGCTCTACCCTCCAGCCGCCGCCGGCCGGGGTTGTGCGTGGAGGGGCTGGCTTCGGAAGCCCGGACGTCCTCCTACGCGCGTTTTGGCTGCCGACACGTCCCCTTGGTTGCAACAAACCTCTTCCCCTTCTCCCTAGTGCCCTCGATATTGTGCCTTCTTCCCTCCCCGCTCCAAACCTGGGCCTATTCCATTGTTCTTTGGTTTGCTGGTGTTATTCCCCGTTCAAAATCTTCTCATTTTCAGCTTGCTCTTGACAATTGGTCCAGATGTTTGTTCTGGGATTTGTGCTCCTCTAGCACCTTGGCTGGCCTCTGCTCTGTGCCCTCCGCTGAGGTTGCGGTTGATGATCTTTCATCAGTGAATTCCCCCCCTTAGCCATTTTCCTTTTGTCTAACTCCTGCTCATCTTCACCCCCTTCCTTGAGACCGTCCAAGACCTTTCAGCGTTTCTCCCTCCTTTTAGGCTTCCTTCCCTTGAAGGACGTTGGAG ]
[+] EMBL AA754568 [ CGGTTGGATCCGCTGTCCTCGCGGCTGGACCTCGTCGGACCCTTGGCGACGGCGACGGGTTCTCTCCGCGGTGCGGCACCCTCGCCGTTGCAGCTCCATGTGACCACGGAGGGCCTCGGCTCAGCATCCTCATCGTCGCGCCCCCCTCCCCCTGGTGCCNGCGGTGTGGGCTGGGCCCGGTGCCCCCAGCTGGCGGCGCCTAGCGATGGCGGGCTCCTTCCCCCGTTGTCNCCGTCCCCCCCCCC ]
[-] EMBL CB658043 [ nTATTCCATTGTTCTTTGGTTTGCTGGTGTTATTCCCCGTTCAAAATCTTCTCATTTTCAGCTTGCTCTTGACAATTGGTCCAGATGTTTGTTCTGGGATTTGTGCTCCTCTAGCACCTTGGCTGGCCTCTGCTCTGTGCCCTCCGCTGAGGTTGCGGTTGATGATCTTTCATCAGTGAATTCCCCCCCTTAGCCATTTTCCTTTTGTCTAACTCCTGCTCATCTTCACCCCCTTCCTTGAGACCGTCCAAGACCTTTCAGCGTTTCTCCCTCCTTTTAGGCTTCCTTCCCTTGAAGGACGTTGGAGTGTGTTGATCTAACAAGCAACTCGATAAAGTTTGATTGAAGAAAACTCATTGTGGGTGGCCTTCGGCCACATCTTTCAGTGCCCTCCCTCTTCTGGGGCTTCCTTCCCCCAGAGGGCGTCGGCGGGCTTTGATCCAAACAACAATAAGATCAAGTTAGCTTCTTGATGACTTCATGCGGGTGGCCTAGGACTTCTACAACCTTTCTTTGGCCTTTCTTCTATTCCGGCATGCTTGTGGCTGCGTGAGGAAATGGATGTTGATAAGCTAGGGTGTTAGCTTTAGGTTTTGGTTTTGGCCGGGTAATTTTGTAGATGTCGTTTGTCAATTGTTATATTTTAGGAGGTTTTCCTTTCTCTGTTCTCTCCTCTTTGTATTCCCCGTGTATTCTGTTCTCCTATCCTCCAGGGCTTCTGCGTTTCTATAGGTGAAGCCTGCCCTGTGTAAGCTCATTTGGCTTAATATATTCAGGTGGGGACTCCCCCCCCTGCCGGTGATTTAG]
consensusID : consensus_8514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[GTCTGATTGAAGAAGACTCATTGCGGGTGCCCTTTGGGCTTCATCTTTCAGAGCCCCTCCCTCCTCTGGGGCTTCCTTCCCCTAAAGAGCGTTGGCGGGCTCTGATTCTAACAGCAACAAGACCAAGTTTGCTTCTTGATGGCTTCTTGCGGGTGCCTTGAACTTCCATAGCCTTTTGATGCCTTTCTTCTATTCTGGCATGCTTGTGGCTGCGTGAGGAAATGGATGTTGATAAGCTAGGATTTTAGCTTTAGGTTTATGGTCTTTGGTTGGGTAATTTCGCACGGTGTCGTTCGTCAATTGTTATCTTTTGGGAGGTTTTCTTTCTGTGTTTTCTCCTCTTTGTATTCCCCGTGTACTCTATTCTCCTATCCTCCAGGGCCCTGCGCTTGCGTAGTGAACCCTGCCCCTGTGTAAGATCATTTGGCTTAATATATTCATGTGGGGACTCTCTCCCCCCCGTGATTTAGTCAAAA]
[+] EMBL BI802429 [GTCTGATTGAAGAAGACTCATTGCGGGTGCCCTTTGGGCTTCATCTTTCAGAGCCCCTCCCTCCTCTGGGGCTTCCTTCCCCTAAAGAGCGTTGGCGGGCTCTGATTCTAACAGCAACAAGACCAAGTTTGCTTCTTGATGGCTTCTTGCGGGTGCCTTGAACTTCCATAGCCTTTTGATGCCTTTCTTCTATTCTGGCATGCTTGTGGCTGCGTGAGGAAATGGATGTTGATAAGCTAGGATTTTAGCTTTAGGTTTATGGTCTTTGGTTGGGTAATTTCGCACGGTGTCGTTCGTCAATTGTTATCTTTTGGGAGGTTTTCTTTCTGTGTTTTCTCCTCTTTGTATTCCCCGTGTACTCTATTCTCCTATCCTCCAGGGCCCTGCGCTTGCGTAGTGAACCCTGCCCCTGTGTAAGATCATTTGGCTTAATATATTCATGTGGGGACTCTCTCCCCCCCGTGATTTAGTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8514#0 GGCGGAGGGATTTGGCAGGCGGTGGAGGCCGAGCCCGGCGCTTCCGGCTGGCGGCGGTTG 60
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 GATCCGCTGTCCTCGCGGCTGGACCTCGTCGGACCCTTGGCGACGGCGACGGGTTCTCTC 120
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CGCGGTGCGGCACCCTCGCCGTTGCAGCTCCATGTGACCACGGAGGGCCTCGGCTCAGCA 180
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 TCCTCATCGTCGCGCCCCCCTCCCCCTGGTGCCGGCGGTGTGGGCTGGGCCCGGTGCCCC 240
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CAGCTGGCGGCGCCTAGCGATGGCGGGCTCCTTCCCCCGTTGTCCCCGTCCCCCCCCCCA 300
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CAGGTTGTCCATGCGTGCAGCGTTGGGTCTGGGACGGCACACGTGGAGCTACGAGGGCCG 360
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 GCGACGTAGCTCTACCCTCCAGCCGCCGCCGGCCGGGGTTGTGCGTGGAGGGGCTGGCTT 420
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CGGAAGCCCGGACGTCCTCCTACGCGCGTTTTGGCTGCCGACACGTCCCCTTGGTTGCAA 480
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CAAACCTCTTCCCCTTCTCCCTAGTGCCCTCGATATTGTGCCTTCTTCCCTCCCCGCTCC 540
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 AAACCTGGGCCTATTCCATTGTTCTTTGGTTTGCTGGTGTTATTCCCCGTTCAAAATCTT 600
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CTCATTTTCAGCTTGCTCTTGACAATTGGTCCAGATGTTTGTTCTGGGATTTGTGCTCCT 660
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CTAGCACCTTGGCTGGCCTCTGCTCTGTGCCCTCCGCTGAGGTTGCGGTTGATGATCTTT 720
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CATCAGTGAATTCCCCCCCTTAGCCATTTTCCTTTTGTCTAACTCCTGCTCATCTTCACC 780
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CCCTTCCTTGAGACCGTCCAAGACCTTTCAGCGTTTCTCCCTCCTTTTAGGCTTCCTTCC 840
consensus_8514#1 ------------------------------------------------------------
consensus_8514#0 CTTGAAGGACGTTGGAGTGTGTTGATCTAACAAGCAACTCGATAAAGTTTGATTGAAGAA 900
consensus_8514#1 ----------------------------------------------GTCTGATTGAAGAA 14
** ***********
consensus_8514#0 AACTCATTGTGGGTGGCCTTCGG-CCACATCTTTCAGTGCCC-TCCCTCTTCTGGGGCTT 958
consensus_8514#1 GACTCATTGCGGGTGCCCTTTGGGCTTCATCTTTCAGAGCCCCTCCCTCCTCTGGGGCTT 74
******** ***** **** ** * ********** **** ****** **********
consensus_8514#0 CCTTCCCCCAGAGGGCGTCGGCGGGCTTTGATCCAAACAACAATAAGATCAAGTTAGCTT 1018
consensus_8514#1 CCTTCCCCTAAAGAGCGTTGGCGGGCTCTGATTCTAACAGCAACAAGACCAAGTTTGCTT 134
******** * ** **** ******** **** * **** *** **** ****** ****
consensus_8514#0 CTTGATGACTTCATGCGGGTGGCCTAGGACTTCTACAACCTTTCTTTGGCCTTTCTTCTA 1078
consensus_8514#1 CTTGATGGCTTCTTGCGGGTG-CCTTGAACTTCCATAGCCTTTTGATG-CCTTTCTTCTA 192
******* **** ******** *** * ***** * * ***** ** ***********
consensus_8514#0 TTCCGGCATGCTTGTGGCTGCGTGAGGAAATGGATGTTGATAAGCTAGGGTGTTAGCTTT 1138
consensus_8514#1 TTCTGGCATGCTTGTGGCTGCGTGAGGAAATGGATGTTGATAAGCTAGGATTTTAGCTTT 252
*** ********************************************* * ********
consensus_8514#0 AGGTTT-TGGT-TTTGGCCGGGTAATTTTGTA-GATGTCGTTTGTCAATTGTTATATTTT 1195
consensus_8514#1 AGGTTTATGGTCTTTGGTTGGGTAATTTCGCACGGTGTCGTTCGTCAATTGTTATCTTTT 312
****** **** ***** ********* * * * ******* ************ ****
consensus_8514#0 AGGAGGTTTTCCTTTCTCTGTTCTCTCCTCTTTGTATTCCCCGTGTATTCTGTTCTCCTA 1255
consensus_8514#1 GGGAGGTTTTC-TTTCTGTGTTTTCTCCTCTTTGTATTCCCCGTGTACTCTATTCTCCTA 371
********** ***** **** ************************ *** ********
consensus_8514#0 TCCTCCAGGGCTTCTGCGTTTCTATAGGTGAAGCCTGCCC-TGTGTAAGCTCATTTGGCT 1314
consensus_8514#1 TCCTCCAGGGCC-CTGCGCTTGCGTAG-TGAACCCTGCCCCTGTGTAAGATCATTTGGCT 429
*********** ***** ** *** **** ******* ******** **********
consensus_8514#0 TAATATATTCAGGTGGGGACTCCCCCCCCTGCCGGTGATTTAG------ 1357
consensus_8514#1 TAATATATTCATGTGGGGACTCTCTCCCC--CCCGTGATTTAGTCAAAA 476
*********** ********** * **** ** *********
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||