cluster # 852

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Oryza sativa
cluster # 852 cluster # 852 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_852#0 length = 629 sequences # 1

consensus_852#1 length = 424 sequences # 1

consensusID : consensus_852#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [CCTTTAAAATTCATTTACATTAAAATCAAAAAACAAGGGAGCTAAGCCCATATAAACCCAACAATCAAACACAATAAAACCCATATAGCACAAAAGTTACAGCCCAATTAGCATCCAACACCCCCCGAAAAACTTTCAATAAAACACAACATTTACAACCCAGTTAACCCCCAAATCCACCCACATGATTGGGCTGTTGTCGGCCTTGCTAACTTCTCGGGGATATTCAAAAGAAGAAAAAGCTGCAAGTACAAGGGAAACTGAAACTCAGAATGACTATGAACAATTTTCTTCTGAATAAACAATCAGGAAAATCATAACGGGTAAGGGGTTAAAAAAAAAAAGTTTGCTGCTTGGGAAAAAGGAAAAGGAACAAATGAACAAATTATAATATAAAATGGAAAATATCTTTACCCATCATTCCATTTGTTTTTTGGCAAAGCCCGCCCAAAGGGAAAAATTCTTGTCAAAGCAAACCCTATTTTAATAAACAAACAAACAAACGCTCAAATCAACCATGCTTTGGATAGCTGGGAGCCTGGGACATCAAGCAAACAACTCTCTGTATGCAAAAATAGTCTTGGGAAAAAATAATGACATAATTATTTCCCATTTCTTTTTTTGGAAAA]

[+] EMBL CB618485             [CCTTTAAAATTCATTTACATTAAAATCAAAAAACAAGGGAGCTAAGCCCATATAAACCCAACAATCAAACACAATAAAACCCATATAGCACAAAAGTTACAGCCCAATTAGCATCCAACACCCCCCGAAAAACTTTCAATAAAACACAACATTTACAACCCAGTTAACCCCCAAATCCACCCACATGATTGGGCTGTTGTCGGCCTTGCTAACTTCTCGGGGATATTCAAAAGAAGAAAAAGCTGCAAGTACAAGGGAAACTGAAACTCAGAATGACTATGAACAATTTTCTTCTGAATAAACAATCAGGAAAATCATAACGGGTAAGGGGTTAAAAAAAAAAAGTTTGCTGCTTGGGAAAAAGGAAAAGGAACAAATGAACAAATTATAATATAAAATGGAAAATATCTTTACCCATCATTCCATTTGTTTTTTGGCAAAGCCCGCCCAAAGGGAAAAATTCTTGTCAAAGCAAACCCTATTTTAATAAACAAACAAACAAACGCTCAAATCAACCATGCTTTGGATAGCTGGGAGCCTGGGACATCAAGCAAACAACTCTCTGTATGCAAAAATAGTCTTGGGAAAAAATAATGACATAATTATTTCCCATTTCTTTTTTTGGAAAA]




>consensus_852#0
CCTTTAAAATTCATTTACATTAAAATCAAAAAACAAGGGAGCTAAGCCCATATAAACCCA
ACAATCAAACACAATAAAACCCATATAGCACAAAAGTTACAGCCCAATTAGCATCCAACA
CCCCCCGAAAAACTTTCAATAAAACACAACATTTACAACCCAGTTAACCCCCAAATCCAC
CCACATGATTGGGCTGTTGTCGGCCTTGCTAACTTCTCGGGGATATTCAAAAGAAGAAAA
AGCTGCAAGTACAAGGGAAACTGAAACTCAGAATGACTATGAACAATTTTCTTCTGAATA
AACAATCAGGAAAATCATAACGGGTAAGGGGTTAAAAAAAAAAAGTTTGCTGCTTGGGAA
AAAGGAAAAGGAACAAATGAACAAATTATAATATAAAATGGAAAATATCTTTACCCATCA
TTCCATTTGTTTTTTGGCAAAGCCCGCCCAAAGGGAAAAATTCTTGTCAAAGCAAACCCT
ATTTTAATAAACAAACAAACAAACGCTCAAATCAACCATGCTTTGGATAGCTGGGAGCCT
GGGACATCAAGCAAACAACTCTCTGTATGCAAAAATAGTCTTGGGAAAAAATAATGACAT
AATTATTTCCCATTTCTTTTTTTGGAAAA

consensusID : consensus_852#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [TTTTTTTTTTCAGCCCAATCATATTATATTCATTTACATTAGTATCAAATAACAAGTGAGCTAAGCCCATATAAACCCAACAATCAAACACAATAAAACCCATATAGCACAAAAGTTACAGCCCAATTAGCATCCAACACCACCCGACAAACATTCAATACAACACAACACTTACAACCCAGTTAACACCCAAATCCAGCACATGATGGGTCTGTGTCTGCCTGTGCTAACTTCTCGGGTATATCAGATGATGAGATAGCTGCAAGTACAAGGGAAACTTGAAACTCAGTATGACTATGAACAATTTTCATCTGAATAAACAATCAGGAAGATCATACGCGGTAATGGGTTAATAAAGAAAAGTTGGTGTGATGTGACGAAGGAAAGGACCAAATGTGAACAATTTATAATATCAGAATGGAAA]

[-] EMBL BI812827             [TTTTTTTTTTCAGCCCAATCATATTATATTCATTTACATTAGTATCAAATAACAAGTGAGCTAAGCCCATATAAACCCAACAATCAAACACAATAAAACCCATATAGCACAAAAGTTACAGCCCAATTAGCATCCAACACCACCCGACAAACATTCAATACAACACAACACTTACAACCCAGTTAACACCCAAATCCAGCACATGATGGGTCTGTGTCTGCCTGTGCTAACTTCTCGGGTATATCAGATGATGAGATAGCTGCAAGTACAAGGGAAACTTGAAACTCAGTATGACTATGAACAATTTTCATCTGAATAAACAATCAGGAAGATCATACGCGGTAATGGGTTAATAAAGAAAAGTTGGTGTGATGTGACGAAGGAAAGGACCAAATGTGAACAATTTATAATATCAGAATGGAAA]




>consensus_852#1
TTTTTTTTTTCAGCCCAATCATATTATATTCATTTACATTAGTATCAAATAACAAGTGAG
CTAAGCCCATATAAACCCAACAATCAAACACAATAAAACCCATATAGCACAAAAGTTACA
GCCCAATTAGCATCCAACACCACCCGACAAACATTCAATACAACACAACACTTACAACCC
AGTTAACACCCAAATCCAGCACATGATGGGTCTGTGTCTGCCTGTGCTAACTTCTCGGGT
ATATCAGATGATGAGATAGCTGCAAGTACAAGGGAAACTTGAAACTCAGTATGACTATGA
ACAATTTTCATCTGAATAAACAATCAGGAAGATCATACGCGGTAATGGGTTAATAAAGAA
AAGTTGGTGTGATGTGACGAAGGAAAGGACCAAATGTGAACAATTTATAATATCAGAATG
GAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_852#0      -------------------CCTTTAAAATTCATTTACATTAAAATCAAAAAACAAGGGAG 41
consensus_852#1      TTTTTTTTTTCAGCCCAATCATATTATATTCATTTACATTAGTATCAAATAACAAGTGAG 60
                                        * * * * **************  ****** ****** ***

consensus_852#0      CTAAGCCCATATAAACCCAACAATCAAACACAATAAAACCCATATAGCACAAAAGTTACA 101
consensus_852#1      CTAAGCCCATATAAACCCAACAATCAAACACAATAAAACCCATATAGCACAAAAGTTACA 120
                     ************************************************************

consensus_852#0      GCCCAATTAGCATCCAACACCCCCCGAAAAACTTTCAATAAAACACAACATTTACAACCC 161
consensus_852#1      GCCCAATTAGCATCCAACACCACCCGACAAACATTCAATACAACACAACACTTACAACCC 180
                     ********************* ***** **** ******* ********* *********

consensus_852#0      AGTTAACCCCCAAATCCACCCACATGATTGGGCTGTTGTCGGCCTTGCTAACTTCTCGGG 221
consensus_852#1      AGTTAACACCCAAATCCAGC-ACATGATGGGTCTGTGTCTGCCTGTGCTAACTTCTCGGG 239
                     ******* ********** * ******* ** ****    * *  ***************

consensus_852#0      GATATTCAAAAGAAGAAAAAGCTGCAAGTACAAGGGAAACT-GAAACTCAGAATGACTAT 280
consensus_852#1      TATAT-CAGATGATGAGATAGCTGCAAGTACAAGGGAAACTTGAAACTCAGTATGACTAT 298
                      **** ** * ** ** * ********************** ********* ********

consensus_852#0      GAACAATTTTCTTCTGAATAAACAATCAGGAAAATCATAACGGGTAAGGGGTTAAAAAAA 340
consensus_852#1      GAACAATTTTCATCTGAATAAACAATCAGGAAGATCATACGCGGTAATGGGTTAATAAAG 358
                     *********** ******************** ******   ***** ******* *** 

consensus_852#0      AAAAGTTTGCTGCTTGGGAAAAAGGAAAAGGAACAAATG--AACAAATTATAATAT-AAA 397
consensus_852#1      AAAAGTTGGTGTGATGTGACGAAGGAAA-GGACCAAATGTGAACAATTTATAATATCAGA 417
                     ******* *     ** **  ******* *** ******  ***** ********* * *

consensus_852#0      ATGGAAAATATCTTTACCCATCATTCCATTTGTTTTTTGGCAAAGCCCGCCCAAAGGGAA 457
consensus_852#1      ATGGAAA----------------------------------------------------- 424
                     *******                                                     

consensus_852#0      AAATTCTTGTCAAAGCAAACCCTATTTTAATAAACAAACAAACAAACGCTCAAATCAACC 517
consensus_852#1      ------------------------------------------------------------
                                                                                 

consensus_852#0      ATGCTTTGGATAGCTGGGAGCCTGGGACATCAAGCAAACAACTCTCTGTATGCAAAAATA 577
consensus_852#1      ------------------------------------------------------------
                                                                                 

consensus_852#0      GTCTTGGGAAAAAATAATGACATAATTATTTCCCATTTCTTTTTTTGGAAAA 629
consensus_852#1      ----------------------------------------------------