cluster # 8520

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Oryza sativa
cluster # 8520 cluster # 8520 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8520#0 length = 719 sequences # 4

consensus_8520#1 length = 351 sequences # 1

consensusID : consensus_8520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 719
fasta sequence

                              [ACCANCTGATCCCACANCAATGGAGTTTTGTTGCCCGNTCCATTCTCAAATACA-CCTCCTTACCTTCGNTCTTTGGGCCTCTTAGTNCTGGCACACNCGGAGCTGTCCCACTGTCTTCTACGAGAAAGTTTCTGGTCCTAATCCATGGGGGTTACAATAACCNTTTTCATCCCTGAATCCATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGAT-GGAGACCCTAAGTGCATTCTTG-CAT-GCTCTGAGGCTCCACTGGGTGGAGTTCCAGAACAAGTTTTACGAGGGTGATGGATACAAGTTTGTACCC-TTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC-TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATGGCTGTGACACGAGAAAAGTGTCTTTTGAATTACACTTGTGGAAATAAATAAGTTCCATT]

[+] EMBL AU030375             [ACCANCTGATCCCACANCAATGGAGTTTTGTTGCCCGNTCCATTCTCAAATACA CCTCCTTACCTTCGNTCTTTGGGCCTCTTAGTNCTGGCACACNCGGAGCTGTCCCACTGTCTTCTACGAGAAAGTTTCTGGTCCTAATCCATGGGGGTTACAATAACCNTTTTCATCCCTGAATCCATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGGAGCCCCTAAGTGCATTCTTGCCATGGCTCTGAGGCTCCACTGGGTGGAGTTCCAGAANAAGTTTTACGAGGGTGATGGATACAAGTTTGTACCCTTTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATGGCTGTGACACGAAAAAA                                          ]
[+] EMBL AK058856             [                                     gtgCAGTCTCAAATACAGCCT CTTACCTTCG TCTTTGGG CTCTTAGT CTTGCACACTCGGAGCTGT CCACTGTCTTCTACGAGAAAG TTCTTGTTCT AT CATGGGGG TACAATAA CATTTTCAT CCTG AT CATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGAT GGAGACCCTAAGTGCATTCTTG CAT GCTCTGAGGCTCCACTGGGTGGAGTTCCAGAACAAGTTTTACGAGGGTGATGGATACAAGTTTGTACCC TTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATGGCTGTGACACGAGTGATGTGTCTTTTGAATTACACTTGTGGAAATAAATAAGTTCCATT]
[+] EMBL AA754354             [                                                                                                                                                                                                                                cgagGAT GGAGACCCTAAGTRCATTCTTG CAT GCTCTGAGGCTCCACTGGGTGGAGTTCCAGAACAAGTTTTACGAGGGTGATGGATACAAGTTTGTACCC TTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAMCCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTCTTTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGAYCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAAT AAAGTTCTGTACTCATGGCTGTGACACGAG                                              ]
[+] EMBL AK060235             [                                                                                                                                                                                                                                                                                                                                                                                          TATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCA                                                             ]




>consensus_8520#0
ACCANCTGATCCCACANCAATGGAGTTTTGTTGCCCGNTCCATTCTCAAATACACCTCCT
TACCTTCGNTCTTTGGGCCTCTTAGTNCTGGCACACNCGGAGCTGTCCCACTGTCTTCTA
CGAGAAAGTTTCTGGTCCTAATCCATGGGGGTTACAATAACCNTTTTCATCCCTGAATCC
ATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGAGACCCTA
AGTGCATTCTTGCATGCTCTGAGGCTCCACTGGGTGGAGTTCCAGAACAAGTTTTACGAG
GGTGATGGATACAAGTTTGTACCCTTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGA
ATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAAT
CATTGTTTATCACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGG
GATGCCAAATCATTCTTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTA
TGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCT
AGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATG
GCTGTGACACGAGAAAAGTGTCTTTTGAATTACACTTGTGGAAATAAATAAGTTCCATT

consensusID : consensus_8520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [CCCTCACCACCATGAGGAGTTTGAATTCAGTGAAGTCTTTGTTCACCAGCTGATCCACACAATTGAGTTTGTGCTCGGTGCAGTCTCAAATACAGCCTCTTACCTTCGTCTTTGGGCTCTTAGTCTTGCACACTCGGAGCTGTCCACTGTCTTCTACGAGAAAGTTCTTGTTCTATCATGGGGGTACAATAACATTTTCATCCTGATCATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGAGACCCTAAGTGCATTCTTGCATGCTCTGAGGCTNCACTGGGTGGAGTTCCAGAACAAGTTTTACGNGGGGTNATGGGTACAAGTTTGTAC]

[+] EMBL OSSS28139            [CCCTCACCACCATGAGGAGTTTGAATTCAGTGAAGTCTTTGTTCACCAGCTGATCCACACAATTGAGTTTGTGCTCGGTGCAGTCTCAAATACAGCCTCTTACCTTCGTCTTTGGGCTCTTAGTCTTGCACACTCGGAGCTGTCCACTGTCTTCTACGAGAAAGTTCTTGTTCTATCATGGGGGTACAATAACATTTTCATCCTGATCATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGAGACCCTAAGTGCATTCTTGCATGCTCTGAGGCTNCACTGGGTGGAGTTCCAGAACAAGTTTTACGNGGGGTNATGGGTACAAGTTTGTAC]




>consensus_8520#1
CCCTCACCACCATGAGGAGTTTGAATTCAGTGAAGTCTTTGTTCACCAGCTGATCCACAC
AATTGAGTTTGTGCTCGGTGCAGTCTCAAATACAGCCTCTTACCTTCGTCTTTGGGCTCT
TAGTCTTGCACACTCGGAGCTGTCCACTGTCTTCTACGAGAAAGTTCTTGTTCTATCATG
GGGGTACAATAACATTTTCATCCTGATCATTGGAGCAGTGATCTTTCTCTTTGCCACTAT
TGGTGTCTTACTTGTGATGGAGACCCTAAGTGCATTCTTGCATGCTCTGAGGCTNCACTG
GGTGGAGTTCCAGAACAAGTTTTACGNGGGGTNATGGGTACAAGTTTGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8520#0      --------------------------------------------ACCANCTGATCCCACA 16
consensus_8520#1      CCCTCACCACCATGAGGAGTTTGAATTCAGTGAAGTCTTTGTTCACCAGCTGATCC-ACA 59
                                                                  **** ******* ***

consensus_8520#0      NCAATGGAGTTTTGTTGCCCGNTCCATTCTCAAATACACCTCCTTACCTTCGNTCTTTGG 76
consensus_8520#1      C-AATTGAGTTT--GTGCTCGGTGCAGTCTCAAATACAGCCTCTTACCTTCGT-CTTTGG 115
                        *** ******   *** ** * ** *********** *  **********  ******

consensus_8520#0      GCCTCTTAGTNCTGGCACACNCGGAGCTGTCCCACTGTCTTCTACGAGAAAGTTTCTGGT 136
consensus_8520#1      GC-TCTTAGTCTTG-CACACTCGGAGCTGTCC-ACTGTCTTCTACGAGAAAGTTCTTG-T 171
                      ** *******  ** ***** *********** *********************  ** *

consensus_8520#0      CCTAATCCATGGGGGTTACAATAACCNTTTTCATCCCTGAATCCATTGGAGCAGTGATCT 196
consensus_8520#1      TCTA--TCATGGGGGT-ACAATAAC-ATTTTCATCC-TGA--TCATTGGAGCAGTGATCT 224
                       ***   ********* ********  ********* ***   *****************

consensus_8520#0      TTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGAGACCCTAAGTGCATTCTTGCATG 256
consensus_8520#1      TTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGAGACCCTAAGTGCATTCTTGCATG 284
                      ************************************************************

consensus_8520#0      CTCTGAGGCTCCACTGGGTGGAGTTCCAGAACAAGTTTTACGAGGG-TGATGGATACAAG 315
consensus_8520#1      CTCTGAGGCTNCACTGGGTGGAGTTCCAGAACAAGTTTTACGNGGGGTNATGGGTACAAG 344
                      ********** ******************************* *** * **** ******

consensus_8520#0      TTTGTACCCTTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTA 375
consensus_8520#1      TTTGTAC----------------------------------------------------- 351
                      *******                                                     

consensus_8520#0      TGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCA 435
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      TTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC 495
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACT 555
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      TTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAAC 615
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      TGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATGGCTGTGACACGAGAA 675
consensus_8520#1      ------------------------------------------------------------
                                                                                  

consensus_8520#0      AAGTGTCTTTTGAATTACACTTGTGGAAATAAATAAGTTCCATT 719
consensus_8520#1      --------------------------------------------